Aluminium in PDB 9p9a: Dnab Complex Binding with Ssdna and Dtdp-Alfx

All present enzymatic activity of Dnab Complex Binding with Ssdna and Dtdp-Alfx:
5.6.2.3;

The structure of Dnab Complex Binding with Ssdna and Dtdp-Alfx also contains other interesting chemical elements:

Fluorine	(F)	20 atoms
Magnesium	(Mg)	5 atoms

The binding sites of Aluminium atom in the Dnab Complex Binding with Ssdna and Dtdp-Alfx (pdb code 9p9a). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the Dnab Complex Binding with Ssdna and Dtdp-Alfx, PDB code: 9p9a:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5;

Aluminium binding site 1 out of 5 in the Dnab Complex Binding with Ssdna and Dtdp-Alfx


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Dnab Complex Binding with Ssdna and Dtdp-Alfx within 5.0Å range: probe atom residue distance (Å) B Occ A:Al503 b:75.9 occ:1.00 AL A:ALF503 0.0 75.9 1.0 F2 A:ALF503 1.8 75.9 1.0 F4 A:ALF503 1.8 75.9 1.0 F1 A:ALF503 1.8 75.9 1.0 F3 A:ALF503 1.8 75.9 1.0 O2B A:TYD502 2.2 79.1 1.0 O F:GLN388 3.5 65.5 1.0 PB A:TYD502 3.6 79.1 1.0 NZ F:LYS418 3.7 65.5 1.0 NE2 A:GLN362 3.7 65.5 1.0 O3B A:TYD502 4.2 79.1 1.0 O1B A:TYD502 4.2 79.1 1.0 NH2 F:ARG420 4.3 65.5 1.0 CB A:PRO212 4.4 65.5 1.0 OE2 A:GLU241 4.4 65.5 1.0 CA A:PRO212 4.4 65.5 1.0 C F:GLN388 4.4 65.5 1.0 CE F:LYS418 4.5 65.5 1.0 N A:SER213 4.5 65.5 1.0 OE1 A:GLU241 4.6 65.5 1.0 CA F:GLN388 4.6 65.5 1.0 NZ A:LYS216 4.7 65.5 1.0 O3A A:TYD502 4.7 79.1 1.0 CD A:GLU241 4.9 65.5 1.0 CD A:GLN362 5.0 65.5 1.0

Aluminium binding site 2 out of 5 in the Dnab Complex Binding with Ssdna and Dtdp-Alfx


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Dnab Complex Binding with Ssdna and Dtdp-Alfx within 5.0Å range: probe atom residue distance (Å) B Occ B:Al501 b:103.0 occ:1.00 AL B:ALF501 0.0 103.0 1.0 F1 B:ALF501 1.8 103.0 1.0 F3 B:ALF501 1.8 103.0 1.0 F2 B:ALF501 1.8 103.0 1.0 F4 B:ALF501 1.8 103.0 1.0 O2B C:TYD502 2.3 83.0 1.0 PB C:TYD502 3.5 83.0 1.0 NH2 B:ARG420 3.5 82.0 1.0 O3B C:TYD502 3.5 83.0 1.0 O B:GLN388 4.1 71.9 1.0 NE2 C:GLN362 4.3 65.5 1.0 O3A C:TYD502 4.4 83.0 1.0 NZ C:LYS216 4.4 65.5 1.0 O1B C:TYD502 4.5 83.0 1.0 CZ B:ARG420 4.7 82.0 1.0 MG C:MG501 4.7 63.0 1.0 NE B:ARG420 5.0 82.0 1.0

Aluminium binding site 3 out of 5 in the Dnab Complex Binding with Ssdna and Dtdp-Alfx


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Dnab Complex Binding with Ssdna and Dtdp-Alfx within 5.0Å range: probe atom residue distance (Å) B Occ D:Al503 b:72.3 occ:1.00 AL D:ALF503 0.0 72.3 1.0 F2 D:ALF503 1.8 72.3 1.0 F1 D:ALF503 1.8 72.3 1.0 F4 D:ALF503 1.8 72.3 1.0 F3 D:ALF503 1.8 72.3 1.0 O2B D:TYD502 2.4 76.2 1.0 NE2 D:GLN362 3.1 65.5 1.0 PB D:TYD502 3.4 76.2 1.0 O1B D:TYD502 3.7 76.2 1.0 O3B D:TYD502 3.8 76.2 1.0 NZ D:LYS216 4.1 65.5 1.0 CD D:GLN362 4.3 65.5 1.0 MG D:MG501 4.4 45.0 1.0 O C:GLN388 4.4 65.5 1.0 NH2 C:ARG420 4.4 65.5 1.0 CA D:PRO212 4.4 65.5 1.0 N D:SER213 4.5 65.5 1.0 OE1 D:GLU241 4.6 65.5 1.0 OE1 D:GLN362 4.6 65.5 1.0 CB D:PRO212 4.7 65.5 1.0 O3A D:TYD502 4.8 76.2 1.0 NZ C:LYS418 4.8 65.5 1.0 CE D:LYS216 4.9 65.5 1.0 OE2 D:GLU241 4.9 65.5 1.0

Aluminium binding site 4 out of 5 in the Dnab Complex Binding with Ssdna and Dtdp-Alfx


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Dnab Complex Binding with Ssdna and Dtdp-Alfx within 5.0Å range: probe atom residue distance (Å) B Occ H:Al503 b:74.0 occ:1.00 AL H:ALF503 0.0 74.0 1.0 F3 H:ALF503 1.8 74.0 1.0 F1 H:ALF503 1.8 74.0 1.0 F4 H:ALF503 1.8 74.0 1.0 F2 H:ALF503 1.8 74.0 1.0 O2B H:TYD502 2.4 74.4 1.0 OE1 H:GLN362 3.4 65.5 1.0 PB H:TYD502 3.7 74.4 1.0 O D:GLN388 4.0 65.5 1.0 NZ D:LYS418 4.1 65.5 1.0 O1B H:TYD502 4.2 74.4 1.0 CB H:PRO212 4.2 65.5 1.0 CA H:PRO212 4.2 65.5 1.0 N H:SER213 4.4 65.5 1.0 NZ H:LYS216 4.4 65.5 1.0 CA D:GLN388 4.4 65.5 1.0 CD H:GLN362 4.5 65.5 1.0 O3B H:TYD502 4.6 74.4 1.0 C D:GLN388 4.6 65.5 1.0 O3A H:TYD502 4.7 74.4 1.0 CE D:LYS418 4.8 65.5 1.0 CB D:GLN388 4.8 65.5 1.0 OE2 H:GLU241 4.8 65.5 1.0 C H:PRO212 4.8 65.5 1.0 CG H:PRO212 4.9 65.5 1.0 NH2 D:ARG420 4.9 65.5 1.0

Aluminium binding site 5 out of 5 in the Dnab Complex Binding with Ssdna and Dtdp-Alfx


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Dnab Complex Binding with Ssdna and Dtdp-Alfx within 5.0Å range: probe atom residue distance (Å) B Occ F:Al503 b:80.2 occ:1.00 AL F:ALF503 0.0 80.2 1.0 F3 F:ALF503 1.8 80.2 1.0 F1 F:ALF503 1.8 80.2 1.0 F2 F:ALF503 1.8 80.2 1.0 F4 F:ALF503 1.8 80.2 1.0 O3B F:TYD502 2.4 80.2 1.0 NE2 F:GLN362 3.4 65.5 1.0 PB F:TYD502 3.6 80.2 1.0 O H:GLN388 3.8 65.5 1.0 O2B F:TYD502 3.9 80.2 1.0 O1B F:TYD502 4.3 80.2 1.0 OE1 F:GLU241 4.3 65.5 1.0 NZ H:LYS418 4.4 65.5 1.0 CD F:GLN362 4.5 65.5 1.0 OE2 F:GLU241 4.6 65.5 1.0 C H:GLN388 4.7 65.5 1.0 OE1 F:GLN362 4.7 65.5 1.0 O3A F:TYD502 4.8 80.2 1.0 CA H:GLN388 4.8 65.5 1.0 NH1 H:ARG420 4.8 65.5 1.0 MG F:MG501 4.8 58.1 1.0 CD F:GLU241 4.9 65.5 1.0 CA F:PRO212 4.9 65.5 1.0 NZ F:LYS216 4.9 65.5 1.0 CB F:PRO212 5.0 65.5 1.0 CE2 F:TYR321 5.0 65.5 1.0

J.M.Berger, C.Liu. Cellular Replisomes Are Powered By A Flex-Fuel Motor For Unwinding Dna To Be Published.