Aluminium in PDB 9umt: TRIC_HDAC1_CLOSE_STATE

The structure of TRIC_HDAC1_CLOSE_STATE also contains other interesting chemical elements:

Fluorine	(F)	24 atoms
Magnesium	(Mg)	8 atoms

The binding sites of Aluminium atom in the TRIC_HDAC1_CLOSE_STATE (pdb code 9umt). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 8 binding sites of Aluminium where determined in the TRIC_HDAC1_CLOSE_STATE, PDB code: 9umt:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Aluminium binding site 1 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ F:Al603 b:78.9 occ:1.00 AL F:AF3603 0.0 78.9 1.0 F3 F:AF3603 1.6 78.9 1.0 F1 F:AF3603 1.6 78.9 1.0 F2 F:AF3603 1.6 78.9 1.0 O2B F:ADP601 1.7 76.4 1.0 PB F:ADP601 2.8 76.4 1.0 O3A F:ADP601 2.8 76.4 1.0 OD1 F:ASP88 3.1 78.7 1.0 OG1 F:THR91 3.2 75.1 1.0 OD2 F:ASP57 3.4 76.3 1.0 O1B F:ADP601 3.6 76.4 1.0 MG F:MG602 3.7 76.8 1.0 CG F:ASP57 3.9 76.3 1.0 O3B F:ADP601 4.0 76.4 1.0 OD2 F:ASP394 4.1 73.4 1.0 N F:GLY89 4.1 73.1 1.0 OG1 F:THR90 4.2 74.1 1.0 CG F:ASP88 4.2 78.7 1.0 PA F:ADP601 4.2 76.4 1.0 N F:THR90 4.2 74.1 1.0 N F:THR91 4.3 75.1 1.0 OD1 F:ASP57 4.3 76.3 1.0 CB F:THR91 4.4 75.1 1.0 O1A F:ADP601 4.4 76.4 1.0 NZ F:LYS159 4.5 71.3 1.0 CA F:ASP57 4.6 76.3 1.0 CB F:ASP57 4.8 76.3 1.0 CA F:GLY89 4.8 73.1 1.0 CA F:ASP88 4.8 78.7 1.0 CE F:LYS159 4.8 71.3 1.0 OD2 F:ASP88 4.9 78.7 1.0 C F:GLY89 4.9 73.1 1.0 C F:ASP88 4.9 78.7 1.0 CA F:THR91 5.0 75.1 1.0

Aluminium binding site 2 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ A:Al603 b:68.7 occ:1.00 AL A:AF3603 0.0 68.7 1.0 F1 A:AF3603 1.6 68.7 1.0 F3 A:AF3603 1.6 68.7 1.0 F2 A:AF3603 1.6 68.7 1.0 O2B A:ADP601 1.7 66.4 1.0 O3A A:ADP601 2.6 66.4 1.0 PB A:ADP601 2.6 66.4 1.0 OD1 A:ASP97 2.7 68.1 1.0 O1B A:ADP601 3.2 66.4 1.0 MG A:MG602 3.3 72.7 1.0 OG1 A:THR100 3.4 61.9 1.0 OD2 A:ASP66 3.7 65.0 1.0 PA A:ADP601 3.9 66.4 1.0 O3B A:ADP601 3.9 66.4 1.0 CG A:ASP97 3.9 68.1 1.0 O1A A:ADP601 3.9 66.4 1.0 N A:GLY98 4.1 65.3 1.0 CB A:THR100 4.4 61.9 1.0 CE A:LYS170 4.5 62.4 1.0 CG A:ASP66 4.5 65.0 1.0 N A:THR100 4.5 61.9 1.0 OG1 A:THR99 4.5 63.7 1.0 OD2 A:ASP97 4.6 68.1 1.0 N A:THR99 4.6 63.7 1.0 NZ A:LYS170 4.6 62.4 1.0 CA A:ASP66 4.6 65.0 1.0 CA A:ASP97 4.7 68.1 1.0 OD2 A:ASP392 4.7 60.6 1.0 O2A A:ADP601 4.7 66.4 1.0 N A:GLY67 4.8 63.3 1.0 CA A:GLY98 4.9 65.3 1.0 CB A:ASP97 4.9 68.1 1.0 C A:ASP97 4.9 68.1 1.0 O5' A:ADP601 5.0 66.4 1.0 CB A:ASP66 5.0 65.0 1.0

Aluminium binding site 3 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ C:Al603 b:81.0 occ:1.00 AL C:AF3603 0.0 81.0 1.0 F2 C:AF3603 1.6 81.0 1.0 F1 C:AF3603 1.6 81.0 1.0 F3 C:AF3603 1.6 81.0 1.0 O2B C:ADP601 1.7 81.4 1.0 PB C:ADP601 2.6 81.4 1.0 O3A C:ADP601 2.6 81.4 1.0 OD2 C:ASP62 2.7 75.2 1.0 O3B C:ADP601 3.1 81.4 1.0 MG C:MG602 3.3 82.2 1.0 NZ C:LYS163 3.4 74.1 1.0 OD1 C:ASP93 3.5 74.1 1.0 CG C:ASP62 3.8 75.2 1.0 CE C:LYS163 3.9 74.1 1.0 O1B C:ADP601 3.9 81.4 1.0 OD2 C:ASP393 4.0 70.4 1.0 PA C:ADP601 4.0 81.4 1.0 O2A C:ADP601 4.3 81.4 1.0 OG1 C:THR96 4.4 72.3 1.0 N C:GLY94 4.5 73.6 1.0 OD1 C:ASP62 4.6 75.2 1.0 N C:THR95 4.6 73.8 1.0 CG C:ASP93 4.6 74.1 1.0 OG1 C:THR95 4.7 73.8 1.0 CB C:ASP62 4.7 75.2 1.0 O1A C:ADP601 4.7 81.4 1.0 CA C:ASP62 4.9 75.2 1.0 CA C:ASP93 4.9 74.1 1.0

Aluminium binding site 4 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ B:Al603 b:74.2 occ:1.00 AL B:AF3603 0.0 74.2 1.0 F3 B:AF3603 1.6 74.2 1.0 F2 B:AF3603 1.6 74.2 1.0 F1 B:AF3603 1.6 74.2 1.0 O1B B:ADP601 1.7 73.2 1.0 O B:ASP104 3.0 71.4 1.0 MG B:MG602 3.1 67.1 1.0 PB B:ADP601 3.2 73.2 1.0 NZ B:LYS174 3.5 69.2 1.0 OD2 B:ASP73 3.6 74.3 1.0 OG1 B:THR107 3.7 71.0 1.0 O1A B:ADP601 3.8 73.2 1.0 O3A B:ADP601 3.9 73.2 1.0 O3B B:ADP601 4.0 73.2 1.0 O2B B:ADP601 4.1 73.2 1.0 CB B:THR107 4.1 71.0 1.0 CA B:ASP73 4.1 74.3 1.0 C B:ASP104 4.2 71.4 1.0 OG1 B:THR106 4.2 70.8 1.0 CG B:ASP73 4.3 74.3 1.0 N B:THR107 4.4 71.0 1.0 OD1 B:ASP104 4.4 71.4 1.0 O B:ASN72 4.5 70.5 1.0 PA B:ADP601 4.5 73.2 1.0 N B:GLY74 4.5 72.1 1.0 CE B:LYS174 4.6 69.2 1.0 CB B:ASP73 4.6 74.3 1.0 N B:THR106 4.6 70.8 1.0 C B:ASP73 4.9 74.3 1.0 CA B:ASP104 4.9 71.4 1.0 N B:ASP73 4.9 74.3 1.0 CA B:THR107 4.9 71.0 1.0

Aluminium binding site 5 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ G:Al603 b:68.1 occ:1.00 AL G:AF3603 0.0 68.1 1.0 F1 G:AF3603 1.6 68.1 1.0 F3 G:AF3603 1.6 68.1 1.0 F2 G:AF3603 1.6 68.1 1.0 O2B G:ADP601 1.7 67.7 1.0 PB G:ADP601 2.6 67.7 1.0 O3A G:ADP601 2.7 67.7 1.0 O G:ASP102 2.9 71.0 1.0 O1B G:ADP601 3.1 67.7 1.0 MG G:MG602 3.6 67.4 1.0 OG1 G:THR104 3.8 64.8 1.0 CG2 G:THR105 3.9 64.6 1.0 O1A G:ADP601 3.9 67.7 1.0 O3B G:ADP601 4.0 67.7 1.0 PA G:ADP601 4.0 67.7 1.0 N G:THR104 4.1 64.8 1.0 OD2 G:ASP71 4.1 62.4 1.0 C G:ASP102 4.1 71.0 1.0 OG1 G:THR105 4.4 64.6 1.0 N G:THR105 4.5 64.6 1.0 OD2 G:ASP402 4.6 62.3 1.0 CA G:GLY103 4.6 64.2 1.0 CB G:THR105 4.8 64.6 1.0 C G:GLY103 4.8 64.2 1.0 N G:GLY103 4.8 64.2 1.0 CA G:ASP71 4.8 62.4 1.0 CB G:THR104 4.9 64.8 1.0 CA G:THR104 4.9 64.8 1.0 O2A G:ADP601 4.9 67.7 1.0 CG G:ASP71 5.0 62.4 1.0

Aluminium binding site 6 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ H:Al603 b:80.5 occ:1.00 AL H:AF3603 0.0 80.5 1.0 F2 H:AF3603 1.6 80.5 1.0 F3 H:AF3603 1.6 80.5 1.0 F1 H:AF3603 1.6 80.5 1.0 OD1 H:ASP90 2.9 82.0 1.0 OD1 H:ASP59 3.0 81.3 1.0 O1B H:ADP601 3.2 80.8 1.0 MG H:MG602 3.7 85.7 1.0 CG H:ASP59 3.9 81.3 1.0 OG1 H:THR93 4.0 75.4 1.0 OD1 H:ASP393 4.0 85.9 1.0 CE H:LYS159 4.1 77.1 1.0 CG H:ASP90 4.2 82.0 1.0 N H:GLY60 4.2 79.7 1.0 N H:THR92 4.3 76.2 1.0 CB H:THR92 4.3 76.2 1.0 O2A H:ADP601 4.3 80.8 1.0 NZ H:LYS159 4.3 77.1 1.0 O3A H:ADP601 4.4 80.8 1.0 N H:GLY91 4.4 78.8 1.0 PB H:ADP601 4.4 80.8 1.0 OD2 H:ASP59 4.5 81.3 1.0 O1A H:ADP601 4.5 80.8 1.0 N H:THR93 4.6 75.4 1.0 PA H:ADP601 4.6 80.8 1.0 CA H:ASP59 4.6 81.3 1.0 OG1 H:THR92 4.8 76.2 1.0 CA H:ASP90 4.8 82.0 1.0 CA H:THR92 4.9 76.2 1.0 OD2 H:ASP90 4.9 82.0 1.0 CB H:ASP59 4.9 81.3 1.0 C H:ASP59 4.9 81.3 1.0

Aluminium binding site 7 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ D:Al602 b:73.5 occ:1.00 AL D:AF3602 0.0 73.5 1.0 F1 D:AF3602 1.6 73.5 1.0 F2 D:AF3602 1.6 73.5 1.0 F3 D:AF3602 1.6 73.5 1.0 O2B D:ADP603 1.7 69.7 1.0 PB D:ADP603 3.1 69.7 1.0 O3A D:ADP603 3.3 69.7 1.0 CA D:ASP61 3.8 70.0 1.0 O1B D:ADP603 4.0 69.7 1.0 O D:ASN60 4.0 67.7 1.0 CG D:ASP61 4.0 70.0 1.0 OD2 D:ASP61 4.1 70.0 1.0 O3B D:ADP603 4.1 69.7 1.0 OG1 D:THR94 4.1 70.7 1.0 NZ D:LYS166 4.1 66.1 1.0 OG1 D:THR95 4.2 68.4 1.0 CB D:ASP92 4.2 75.0 1.0 N D:GLY62 4.3 68.4 1.0 OD1 D:ASP61 4.3 70.0 1.0 CA D:ASP92 4.4 75.0 1.0 CB D:ASP61 4.4 70.0 1.0 MG D:MG601 4.5 75.6 1.0 N D:ASP61 4.5 70.0 1.0 C D:ASN60 4.6 67.7 1.0 C D:ASP61 4.6 70.0 1.0 OD1 D:ASP391 4.7 71.3 1.0 PA D:ADP603 4.7 69.7 1.0 C D:ASP92 4.8 75.0 1.0 O1A D:ADP603 4.8 69.7 1.0

Aluminium binding site 8 out of 8 in the TRIC_HDAC1_CLOSE_STATE


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of TRIC_HDAC1_CLOSE_STATE within 5.0Å range: probe atom residue distance (Å) B Occ E:Al603 b:78.1 occ:1.00 AL E:AF3603 0.0 78.1 1.0 F1 E:AF3603 1.6 78.1 1.0 F2 E:AF3603 1.6 78.1 1.0 F3 E:AF3603 1.6 78.1 1.0 O1B E:ADP601 1.7 75.1 1.0 PB E:ADP601 2.8 75.1 1.0 O3B E:ADP601 3.3 75.1 1.0 MG E:MG602 3.4 77.1 1.0 O2B E:ADP601 3.5 75.1 1.0 OG1 E:THR101 3.6 76.6 1.0 OD1 E:ASP68 3.7 77.5 1.0 NZ E:LYS171 3.8 70.9 1.0 CG E:ASP68 4.0 77.5 1.0 N E:GLY100 4.0 76.7 1.0 OD2 E:ASP68 4.0 77.5 1.0 O1A E:ADP601 4.1 75.1 1.0 O3A E:ADP601 4.1 75.1 1.0 N E:THR101 4.1 76.6 1.0 CE E:LYS171 4.2 70.9 1.0 N E:ASN102 4.5 75.3 1.0 OD1 E:ASP99 4.6 79.4 1.0 CB E:THR101 4.7 76.6 1.0 CA E:ASP99 4.7 79.4 1.0 PA E:ADP601 4.8 75.1 1.0 CA E:GLY100 4.8 76.7 1.0 CB E:ASP68 4.9 77.5 1.0 N E:ALA69 4.9 77.1 1.0 CA E:THR101 4.9 76.6 1.0 C E:ASP99 4.9 79.4 1.0 C E:GLY100 4.9 76.7 1.0 CA E:ASP68 4.9 77.5 1.0 CG2 E:THR101 4.9 76.6 1.0 CB E:ASN102 5.0 75.3 1.0

Z.L.Li, Y.C.Cong. Tric-Assisted Folding of Class I Hdac Family Proteins Regulated By Distinct Co-Chaperone and Cofactor Networks To Be Published.