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Aluminium in PDB 1bs1: Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium

Enzymatic activity of Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium

All present enzymatic activity of Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium:
6.3.3.3;

Protein crystallography data

The structure of Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium, PDB code: 1bs1 was solved by H.Kaeck, J.Sandmark, K.J.Gibson, G.Schneider, Y.Lindqvist, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 72.900, 48.200, 60.900, 90.00, 107.00, 90.00
R / Rfree (%) 17.2 / 20.6

Other elements in 1bs1:

The structure of Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium (pdb code 1bs1). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium, PDB code: 1bs1:

Aluminium binding site 1 out of 1 in 1bs1

Go back to Aluminium Binding Sites List in 1bs1
Aluminium binding site 1 out of 1 in the Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Dethiobiotin Synthetase Complexed with Dethiobiotin, Adp , Inorganic Phosphate and Magnesium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al850

b:14.2
occ:1.00
 AL A:DAA850 0.0 14.2 1.0
F1 A:DAA850 1.6 18.1 1.0
F2 A:DAA850 1.6 19.4 1.0
F3 A:DAA850 1.6 17.3 1.0
O11 A:DAA850 1.9 15.7 1.0
CN1 A:DAA850 3.1 16.1 1.0
N A:GLY118 3.4 9.1 1.0
MG A:MG902 3.4 16.0 1.0
CZ A:DAA850 3.4 16.5 1.0
O3B A:ADP802 3.6 10.7 1.0
N2 A:DAA850 3.6 19.0 1.0
NZ A:LYS15 3.6 15.6 1.0
MG A:MG901 3.6 20.2 1.0
NZ A:LYS37 3.7 7.5 1.0
N1 A:DAA850 3.7 16.5 1.0
OG1 A:THR11 3.8 11.7 1.0
OD2 A:ASP54 3.9 9.4 1.0
CH A:DAA850 4.0 17.2 1.0
O12 A:DAA850 4.0 12.9 1.0
CE A:LYS15 4.0 13.3 1.0
O A:HOH717 4.1 13.6 1.0
CA A:GLY118 4.2 9.2 1.0
CA A:ALA117 4.2 9.6 1.0
C A:ALA117 4.3 8.9 1.0
O A:HOH444 4.3 23.8 1.0
O2B A:ADP802 4.3 9.8 1.0
PB A:ADP802 4.4 11.0 1.0
OE2 A:GLU115 4.6 12.1 1.0
CE A:DAA850 4.6 15.2 1.0
O A:HOH754 4.7 17.4 1.0
O A:GLY116 4.8 8.7 1.0
CB A:THR11 4.8 10.5 1.0
CB A:ALA117 4.9 10.2 1.0
CE A:LYS37 5.0 8.0 1.0

Reference:

H.Kack, J.Sandmark, K.J.Gibson, G.Schneider, Y.Lindqvist. Crystal Structure of Two Quaternary Complexes of Dethiobiotin Synthetase, Enzyme-Mgadp-ALF3-Diaminopelargonic Acid and Enzyme-Mgadp-Dethiobiotin-Phosphate; Implications For Catalysis. Protein Sci. V. 7 2560 1998.
ISSN: ISSN 0961-8368
PubMed: 9865950
Page generated: Wed Jul 10 09:20:40 2024

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