Atomistry » Aluminium » PDB 1a6e-1tx4 » 1k3c
Atomistry »
  Aluminium »
    PDB 1a6e-1tx4 »
      1k3c »

Aluminium in PDB 1k3c: Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate

Enzymatic activity of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate

All present enzymatic activity of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate:
4.1.1.49;

Protein crystallography data

The structure of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate, PDB code: 1k3c was solved by A.M.Sudom, L.Prasad, H.Goldie, L.T.J.Delbaere, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.738, 94.211, 46.336, 90.00, 96.05, 90.00
R / Rfree (%) 22.3 / 28.5

Other elements in 1k3c:

The structure of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 1 atom

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate (pdb code 1k3c). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate, PDB code: 1k3c:

Aluminium binding site 1 out of 1 in 1k3c

Go back to Aluminium Binding Sites List in 1k3c
Aluminium binding site 1 out of 1 in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al999

b:31.2
occ:1.00
 AL A:AF3999 0.0 31.2 1.0
F3 A:AF3999 1.8 41.5 1.0
F1 A:AF3999 1.8 34.0 1.0
F2 A:AF3999 1.8 45.4 1.0
O3B A:ADP541 2.9 16.4 1.0
MG A:MG998 3.7 8.5 1.0
NZ A:LYS254 3.7 15.4 1.0
OD2 A:ASP269 3.9 8.4 1.0
PB A:ADP541 3.9 10.4 1.0
CA A:SER250 3.9 14.1 1.0
O A:HOH663 3.9 16.1 1.0
CB A:SER250 4.1 14.3 1.0
OG A:SER250 4.1 10.5 1.0
NH2 A:ARG333 4.1 12.1 1.0
O2B A:ADP541 4.1 17.8 1.0
O A:HOH662 4.2 11.2 1.0
CE A:LYS254 4.2 14.0 1.0
O3 A:PYR542 4.3 51.6 1.0
NH1 A:ARG333 4.4 9.7 1.0
O1B A:ADP541 4.4 15.8 1.0
NE2 A:HIS232 4.5 6.8 1.0
O A:HOH753 4.5 8.6 1.0
N A:SER250 4.6 16.2 1.0
N A:GLY251 4.6 10.3 1.0
NZ A:LYS213 4.7 16.3 1.0
O A:HOH754 4.7 10.4 1.0
CZ A:ARG333 4.8 9.9 1.0
C A:SER250 4.8 14.7 1.0
CG A:ASP269 4.9 13.5 1.0
CE1 A:HIS232 4.9 5.6 1.0
O A:LEU249 5.0 18.7 1.0

Reference:

A.M.Sudom, L.Prasad, H.Goldie, L.T.Delbaere. The Phosphoryl-Transfer Mechanism of Escherichia Coli Phosphoenolpyruvate Carboxykinase From the Use of Alf(3). J.Mol.Biol. V. 314 83 2001.
ISSN: ISSN 0022-2836
PubMed: 11724534
DOI: 10.1006/JMBI.2001.5120
Page generated: Wed Jul 10 09:22:32 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy