Atomistry » Aluminium » PDB 1a6e-1tx4 » 1k3c
Atomistry »
  Aluminium »
    PDB 1a6e-1tx4 »
      1k3c »

Aluminium in PDB 1k3c: Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate

Enzymatic activity of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate

All present enzymatic activity of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate:
4.1.1.49;

Protein crystallography data

The structure of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate, PDB code: 1k3c was solved by A.M.Sudom, L.Prasad, H.Goldie, L.T.J.Delbaere, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 124.738, 94.211, 46.336, 90.00, 96.05, 90.00
R / Rfree (%) 22.3 / 28.5

Other elements in 1k3c:

The structure of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 1 atom

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate (pdb code 1k3c). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate, PDB code: 1k3c:

Aluminium binding site 1 out of 1 in 1k3c

Go back to Aluminium Binding Sites List in 1k3c
Aluminium binding site 1 out of 1 in the Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Phosphoenolpyruvate Carboxykinase in Complex with Adp, ALF3 and Pyruvate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al999

b:31.2
occ:1.00
 AL A:AF3999 0.0 31.2 1.0
F3 A:AF3999 1.8 41.5 1.0
F1 A:AF3999 1.8 34.0 1.0
F2 A:AF3999 1.8 45.4 1.0
O3B A:ADP541 2.9 16.4 1.0
MG A:MG998 3.7 8.5 1.0
NZ A:LYS254 3.7 15.4 1.0
OD2 A:ASP269 3.9 8.4 1.0
PB A:ADP541 3.9 10.4 1.0
CA A:SER250 3.9 14.1 1.0
O A:HOH663 3.9 16.1 1.0
CB A:SER250 4.1 14.3 1.0
OG A:SER250 4.1 10.5 1.0
NH2 A:ARG333 4.1 12.1 1.0
O2B A:ADP541 4.1 17.8 1.0
O A:HOH662 4.2 11.2 1.0
CE A:LYS254 4.2 14.0 1.0
O3 A:PYR542 4.3 51.6 1.0
NH1 A:ARG333 4.4 9.7 1.0
O1B A:ADP541 4.4 15.8 1.0
NE2 A:HIS232 4.5 6.8 1.0
O A:HOH753 4.5 8.6 1.0
N A:SER250 4.6 16.2 1.0
N A:GLY251 4.6 10.3 1.0
NZ A:LYS213 4.7 16.3 1.0
O A:HOH754 4.7 10.4 1.0
CZ A:ARG333 4.8 9.9 1.0
C A:SER250 4.8 14.7 1.0
CG A:ASP269 4.9 13.5 1.0
CE1 A:HIS232 4.9 5.6 1.0
O A:LEU249 5.0 18.7 1.0

Reference:

A.M.Sudom, L.Prasad, H.Goldie, L.T.Delbaere. The Phosphoryl-Transfer Mechanism of Escherichia Coli Phosphoenolpyruvate Carboxykinase From the Use of Alf(3). J.Mol.Biol. V. 314 83 2001.
ISSN: ISSN 0022-2836
PubMed: 11724534
DOI: 10.1006/JMBI.2001.5120
Page generated: Wed Jul 10 09:22:32 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy