Aluminium in PDB 1k5g: Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex

The structure of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex, PDB code: 1k5g was solved by M.J.Seewald, C.Koerner, A.Wittinghofer, I.R.Vetter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.00 / 3.10
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	99.930, 102.568, 118.850, 71.67, 79.09, 67.81
R / Rfree (%)	25 / 26.9

The structure of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex also contains other interesting chemical elements:

Fluorine	(F)	12 atoms
Magnesium	(Mg)	4 atoms

The binding sites of Aluminium atom in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex (pdb code 1k5g). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex, PDB code: 1k5g:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Al1252 b:57.4 occ:1.00 AL A:AF31252 0.0 57.4 1.0 F3 A:AF31252 1.6 57.5 1.0 F1 A:AF31252 1.7 57.3 1.0 F2 A:AF31252 1.7 57.7 1.0 MG A:MG1251 3.2 31.7 1.0 O3B A:GDP1250 3.3 43.3 1.0 O2B A:GDP1250 3.6 43.3 1.0 N A:GLY68 3.8 39.6 1.0 CA A:GLY19 3.8 42.9 1.0 OE1 A:GLN69 3.9 42.7 1.0 PB A:GDP1250 4.0 43.3 1.0 N A:THR42 4.0 34.6 1.0 OH A:TYR39 4.0 40.6 1.0 N A:GLY20 4.1 63.3 1.0 CA A:ALA41 4.4 24.4 1.0 NE2 A:GLN69 4.4 42.5 1.0 C A:GLY19 4.5 42.9 1.0 CA A:GLY68 4.5 39.6 1.0 CE1 A:TYR39 4.5 40.6 1.0 CD A:GLN69 4.6 42.5 1.0 O1B A:GDP1250 4.6 43.3 1.0 CA A:ALA67 4.6 25.9 1.0 NZ A:LYS23 4.7 30.1 1.0 CB A:ALA41 4.7 10.4 1.0 C A:ALA67 4.7 25.9 1.0 CB A:THR42 4.7 33.6 1.0 C A:ALA41 4.7 24.4 1.0 OG1 A:THR42 4.8 33.6 1.0 CZ A:TYR39 4.8 40.6 1.0 CE A:LYS23 4.9 30.1 1.0 CA A:THR42 4.9 34.6 1.0 N A:GLY19 4.9 42.9 1.0 O A:THR66 5.0 38.6 1.0

Aluminium binding site 2 out of 4 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range: probe atom residue distance (Å) B Occ D:Al2252 b:57.4 occ:1.00 AL D:AF32252 0.0 57.4 1.0 F3 D:AF32252 1.6 57.5 1.0 F2 D:AF32252 1.7 57.7 1.0 F1 D:AF32252 1.7 57.3 1.0 MG D:MG2251 3.1 45.2 1.0 O3B D:GDP2250 3.2 32.0 1.0 O2B D:GDP2250 3.4 32.0 1.0 N D:THR42 3.8 25.1 1.0 PB D:GDP2250 3.9 32.0 1.0 N D:GLY68 4.0 44.9 1.0 CA D:GLY19 4.0 32.7 1.0 OE1 D:GLN69 4.0 42.4 1.0 OH D:TYR39 4.1 60.1 1.0 N D:GLY20 4.2 43.9 1.0 CA D:ALA41 4.2 27.9 1.0 CE1 D:TYR39 4.5 60.1 1.0 O1B D:GDP2250 4.5 32.0 1.0 CB D:THR42 4.5 2.1 1.0 C D:ALA41 4.5 27.9 1.0 OG1 D:THR42 4.6 2.1 1.0 CB D:ALA41 4.6 52.1 1.0 NE2 D:GLN69 4.6 42.2 1.0 C D:GLY19 4.7 32.7 1.0 CA D:ALA67 4.7 36.2 1.0 CA D:THR42 4.7 25.1 1.0 NZ D:LYS23 4.7 26.3 1.0 CD D:GLN69 4.8 42.2 1.0 CA D:GLY68 4.8 44.9 1.0 CZ D:TYR39 4.8 60.1 1.0 C D:ALA67 4.8 36.2 1.0 CE D:LYS23 4.9 26.3 1.0 O D:THR42 5.0 25.1 1.0 O D:THR66 5.0 23.3 1.0

Aluminium binding site 3 out of 4 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Al3252 b:57.4 occ:1.00 AL G:AF33252 0.0 57.4 1.0 F3 G:AF33252 1.6 57.5 1.0 F2 G:AF33252 1.7 57.7 1.0 F1 G:AF33252 1.7 57.3 1.0 MG G:MG3251 3.0 44.9 1.0 O3B G:GDP3250 3.4 35.4 1.0 O2B G:GDP3250 3.5 35.4 1.0 N G:THR42 3.7 40.0 1.0 N G:GLY68 3.9 42.8 1.0 OE1 G:GLN69 3.9 55.0 1.0 PB G:GDP3250 4.0 35.4 1.0 CA G:GLY19 4.0 27.0 1.0 OH G:TYR39 4.2 25.3 1.0 CA G:ALA41 4.2 14.8 1.0 N G:GLY20 4.3 57.5 1.0 CB G:THR42 4.5 46.2 1.0 OG1 G:THR42 4.5 46.2 1.0 C G:ALA41 4.5 14.8 1.0 CA G:ALA67 4.5 42.5 1.0 NE2 G:GLN69 4.5 54.8 1.0 CB G:ALA41 4.6 63.6 1.0 O1B G:GDP3250 4.6 35.4 1.0 CE1 G:TYR39 4.6 25.3 1.0 CA G:THR42 4.6 40.0 1.0 CD G:GLN69 4.7 54.7 1.0 C G:ALA67 4.7 42.5 1.0 CA G:GLY68 4.7 42.8 1.0 C G:GLY19 4.8 27.0 1.0 NZ G:LYS23 4.8 26.7 1.0 O G:THR42 4.9 40.0 1.0 O G:THR66 4.9 29.3 1.0 CE G:LYS23 4.9 26.7 1.0 CZ G:TYR39 4.9 25.3 1.0

Aluminium binding site 4 out of 4 in the Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Crystal Structure of Ran-Gdp-Alfx-RANBP1-Rangap Complex within 5.0Å range: probe atom residue distance (Å) B Occ J:Al4252 b:57.4 occ:1.00 AL J:AF34252 0.0 57.4 1.0 F3 J:AF34252 1.6 57.5 1.0 F2 J:AF34252 1.7 57.7 1.0 F1 J:AF34252 1.7 57.3 1.0 MG J:MG4251 3.0 33.0 1.0 O3B J:GDP4250 3.2 29.1 1.0 O2B J:GDP4250 3.4 29.1 1.0 N J:GLY68 3.8 34.3 1.0 PB J:GDP4250 3.8 29.1 1.0 CA J:GLY19 3.9 27.6 1.0 N J:THR42 3.9 14.9 1.0 OE1 J:GLN69 4.0 45.1 1.0 N J:GLY20 4.2 57.1 1.0 OH J:TYR39 4.2 25.5 1.0 CA J:ALA41 4.4 12.5 1.0 O1B J:GDP4250 4.4 29.1 1.0 CA J:ALA67 4.5 27.0 1.0 CA J:GLY68 4.6 34.3 1.0 C J:GLY19 4.6 27.6 1.0 CB J:THR42 4.6 20.4 1.0 NZ J:LYS23 4.6 28.9 1.0 CE1 J:TYR39 4.6 25.5 1.0 OG1 J:THR42 4.6 20.4 1.0 NE2 J:GLN69 4.6 44.9 1.0 CE J:LYS23 4.7 28.9 1.0 C J:ALA67 4.7 27.0 1.0 C J:ALA41 4.7 12.5 1.0 CD J:GLN69 4.8 44.8 1.0 CB J:ALA41 4.8 19.7 1.0 O J:THR66 4.8 28.0 1.0 CA J:THR42 4.8 14.9 1.0 CZ J:TYR39 4.9 25.5 1.0 N J:GLY19 5.0 27.6 1.0

M.J.Seewald, C.Korner, A.Wittinghofer, I.R.Vetter. Rangap Mediates Gtp Hydrolysis Without An Arginine Finger. Nature V. 415 662 2002.
ISSN: ISSN 0028-0836
PubMed: 11832950
DOI: 10.1038/415662A