Aluminium in PDB 1svt: Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Protein crystallography data
The structure of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7, PDB code: 1svt
was solved by
C.Chaudhry,
A.L.Horwich,
A.T.Brunger,
P.D.Adams,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.39 /
2.81
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
255.546,
266.855,
187.049,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.7 /
27.4
|
Other elements in 1svt:
The structure of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
(pdb code 1svt). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 7 binding sites of Aluminium where determined in the
Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7, PDB code: 1svt:
Jump to Aluminium binding site number:
1;
2;
3;
4;
5;
6;
7;
Aluminium binding site 1 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 1 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al602
b:7.2
occ:1.00
|
AL
|
A:AF3602
|
0.0
|
7.2
|
1.0
|
F3
|
A:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
A:AF3602
|
1.8
|
10.1
|
1.0
|
F1
|
A:AF3602
|
1.9
|
2.8
|
1.0
|
O3B
|
A:ADP600
|
2.1
|
3.6
|
1.0
|
O1B
|
A:ADP600
|
2.8
|
2.0
|
1.0
|
PB
|
A:ADP600
|
2.8
|
2.0
|
1.0
|
MG
|
A:MG601
|
2.9
|
2.0
|
1.0
|
OD1
|
A:ASP87
|
3.0
|
2.0
|
1.0
|
O2A
|
A:ADP600
|
3.4
|
2.0
|
1.0
|
O3A
|
A:ADP600
|
3.5
|
2.6
|
1.0
|
OG1
|
A:THR89
|
3.6
|
2.6
|
1.0
|
O
|
A:HOH615
|
3.7
|
25.2
|
1.0
|
K
|
A:K603
|
3.9
|
16.4
|
1.0
|
PA
|
A:ADP600
|
4.1
|
2.2
|
1.0
|
OD2
|
A:ASP398
|
4.1
|
8.1
|
1.0
|
O2B
|
A:ADP600
|
4.1
|
2.0
|
1.0
|
N
|
A:GLY88
|
4.2
|
2.0
|
1.0
|
OG1
|
A:THR90
|
4.2
|
2.0
|
1.0
|
CG
|
A:ASP87
|
4.2
|
2.4
|
1.0
|
N
|
A:THR89
|
4.5
|
2.1
|
1.0
|
N
|
A:THR90
|
4.6
|
2.1
|
1.0
|
OD1
|
A:ASP52
|
4.6
|
5.6
|
1.0
|
N
|
A:GLY53
|
4.6
|
2.2
|
1.0
|
CA
|
A:ASP87
|
4.7
|
2.0
|
1.0
|
O1A
|
A:ADP600
|
4.8
|
2.0
|
1.0
|
CB
|
A:THR90
|
4.8
|
2.3
|
1.0
|
C
|
A:ASP87
|
4.8
|
2.0
|
1.0
|
CA
|
A:GLY88
|
4.9
|
2.1
|
1.0
|
CB
|
A:THR89
|
4.9
|
2.0
|
1.0
|
CA
|
A:ASP52
|
5.0
|
2.3
|
1.0
|
C
|
A:GLY88
|
5.0
|
2.4
|
1.0
|
OD2
|
A:ASP87
|
5.0
|
4.2
|
1.0
|
|
Aluminium binding site 2 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 2 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Al602
b:8.0
occ:1.00
|
AL
|
B:AF3602
|
0.0
|
8.0
|
1.0
|
F3
|
B:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
B:AF3602
|
1.8
|
10.1
|
1.0
|
F1
|
B:AF3602
|
1.9
|
2.1
|
1.0
|
O3B
|
B:ADP600
|
2.0
|
3.2
|
1.0
|
PB
|
B:ADP600
|
2.6
|
2.2
|
1.0
|
O1B
|
B:ADP600
|
2.8
|
2.0
|
1.0
|
MG
|
B:MG601
|
3.2
|
2.0
|
1.0
|
OD1
|
B:ASP87
|
3.3
|
2.0
|
1.0
|
O3A
|
B:ADP600
|
3.4
|
2.5
|
1.0
|
O2A
|
B:ADP600
|
3.6
|
2.6
|
1.0
|
OG1
|
B:THR89
|
3.6
|
2.3
|
1.0
|
K
|
B:K603
|
3.7
|
16.3
|
1.0
|
OG1
|
B:THR90
|
3.8
|
2.5
|
1.0
|
O2B
|
B:ADP600
|
3.9
|
2.6
|
1.0
|
PA
|
B:ADP600
|
4.0
|
3.2
|
1.0
|
OD2
|
B:ASP398
|
4.1
|
8.1
|
1.0
|
N
|
B:GLY88
|
4.2
|
2.0
|
1.0
|
N
|
B:THR90
|
4.4
|
2.0
|
1.0
|
N
|
B:THR89
|
4.4
|
2.0
|
1.0
|
CG
|
B:ASP87
|
4.5
|
2.4
|
1.0
|
N
|
B:GLY53
|
4.5
|
2.0
|
1.0
|
CB
|
B:THR90
|
4.5
|
2.0
|
1.0
|
OD1
|
B:ASP52
|
4.5
|
5.5
|
1.0
|
O1A
|
B:ADP600
|
4.7
|
2.0
|
1.0
|
CA
|
B:GLY88
|
4.9
|
2.0
|
1.0
|
CA
|
B:ASP87
|
4.9
|
2.0
|
1.0
|
CB
|
B:THR89
|
4.9
|
2.0
|
1.0
|
C
|
B:ASP87
|
4.9
|
2.0
|
1.0
|
CA
|
B:ASP52
|
5.0
|
2.2
|
1.0
|
C
|
B:GLY88
|
5.0
|
2.0
|
1.0
|
|
Aluminium binding site 3 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 3 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 3 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al602
b:8.2
occ:1.00
|
AL
|
C:AF3602
|
0.0
|
8.2
|
1.0
|
F3
|
C:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
C:AF3602
|
1.8
|
10.6
|
1.0
|
F1
|
C:AF3602
|
1.9
|
2.0
|
1.0
|
O3B
|
C:ADP600
|
2.2
|
3.2
|
1.0
|
PB
|
C:ADP600
|
2.7
|
2.5
|
1.0
|
O1B
|
C:ADP600
|
2.7
|
2.0
|
1.0
|
MG
|
C:MG601
|
3.0
|
2.0
|
1.0
|
OD1
|
C:ASP87
|
3.2
|
2.9
|
1.0
|
O2A
|
C:ADP600
|
3.4
|
2.4
|
1.0
|
O3A
|
C:ADP600
|
3.5
|
2.6
|
1.0
|
OG1
|
C:THR89
|
3.7
|
2.4
|
1.0
|
K
|
C:K603
|
3.9
|
15.8
|
1.0
|
OD2
|
C:ASP398
|
3.9
|
8.5
|
1.0
|
OG1
|
C:THR90
|
3.9
|
2.1
|
1.0
|
PA
|
C:ADP600
|
4.0
|
2.0
|
1.0
|
O2B
|
C:ADP600
|
4.1
|
2.3
|
1.0
|
N
|
C:GLY88
|
4.3
|
2.0
|
1.0
|
CG
|
C:ASP87
|
4.4
|
3.1
|
1.0
|
N
|
C:THR89
|
4.5
|
2.0
|
1.0
|
N
|
C:THR90
|
4.5
|
2.0
|
1.0
|
OD1
|
C:ASP52
|
4.5
|
6.1
|
1.0
|
N
|
C:GLY53
|
4.6
|
2.1
|
1.0
|
O1A
|
C:ADP600
|
4.7
|
2.0
|
1.0
|
CB
|
C:THR90
|
4.7
|
2.0
|
1.0
|
CA
|
C:ASP87
|
4.9
|
2.0
|
1.0
|
CA
|
C:GLY88
|
5.0
|
2.0
|
1.0
|
O
|
C:LYS51
|
5.0
|
2.9
|
1.0
|
CA
|
C:ASP52
|
5.0
|
2.4
|
1.0
|
C
|
C:ASP87
|
5.0
|
2.0
|
1.0
|
|
Aluminium binding site 4 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 4 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 4 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Al602
b:8.1
occ:1.00
|
AL
|
D:AF3602
|
0.0
|
8.1
|
1.0
|
F3
|
D:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
D:AF3602
|
1.8
|
10.1
|
1.0
|
F1
|
D:AF3602
|
1.9
|
2.0
|
1.0
|
O3B
|
D:ADP600
|
2.1
|
3.4
|
1.0
|
O1B
|
D:ADP600
|
2.7
|
2.0
|
1.0
|
PB
|
D:ADP600
|
2.7
|
2.5
|
1.0
|
MG
|
D:MG601
|
2.9
|
2.0
|
1.0
|
OD1
|
D:ASP87
|
3.2
|
2.2
|
1.0
|
O2A
|
D:ADP600
|
3.4
|
2.0
|
1.0
|
O3A
|
D:ADP600
|
3.5
|
2.1
|
1.0
|
OG1
|
D:THR89
|
3.6
|
2.9
|
1.0
|
K
|
D:K603
|
3.8
|
16.7
|
1.0
|
PA
|
D:ADP600
|
3.9
|
2.3
|
1.0
|
O2B
|
D:ADP600
|
4.0
|
2.3
|
1.0
|
OG1
|
D:THR90
|
4.1
|
2.6
|
1.0
|
N
|
D:GLY88
|
4.1
|
2.0
|
1.0
|
OD2
|
D:ASP398
|
4.1
|
8.1
|
1.0
|
O
|
D:HOH611
|
4.1
|
51.0
|
1.0
|
CG
|
D:ASP87
|
4.4
|
2.5
|
1.0
|
N
|
D:THR89
|
4.4
|
2.0
|
1.0
|
N
|
D:THR90
|
4.4
|
2.0
|
1.0
|
OD1
|
D:ASP52
|
4.5
|
5.9
|
1.0
|
N
|
D:GLY53
|
4.6
|
2.1
|
1.0
|
O1A
|
D:ADP600
|
4.6
|
2.0
|
1.0
|
CB
|
D:THR90
|
4.8
|
2.1
|
1.0
|
CA
|
D:ASP87
|
4.8
|
2.0
|
1.0
|
CA
|
D:GLY88
|
4.8
|
2.0
|
1.0
|
C
|
D:ASP87
|
4.8
|
2.0
|
1.0
|
CB
|
D:THR89
|
5.0
|
2.0
|
1.0
|
C
|
D:GLY88
|
5.0
|
2.0
|
1.0
|
|
Aluminium binding site 5 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 5 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 5 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Al602
b:8.2
occ:1.00
|
AL
|
E:AF3602
|
0.0
|
8.2
|
1.0
|
F3
|
E:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
E:AF3602
|
1.8
|
9.8
|
1.0
|
F1
|
E:AF3602
|
1.8
|
2.0
|
1.0
|
O3B
|
E:ADP600
|
2.1
|
3.5
|
1.0
|
PB
|
E:ADP600
|
2.7
|
2.3
|
1.0
|
O1B
|
E:ADP600
|
2.8
|
2.0
|
1.0
|
MG
|
E:MG601
|
2.9
|
2.0
|
1.0
|
OD1
|
E:ASP87
|
3.1
|
2.3
|
1.0
|
O3A
|
E:ADP600
|
3.4
|
2.7
|
1.0
|
O2A
|
E:ADP600
|
3.5
|
2.5
|
1.0
|
OG1
|
E:THR89
|
3.6
|
2.8
|
1.0
|
K
|
E:K603
|
3.9
|
16.2
|
1.0
|
OD2
|
E:ASP398
|
4.0
|
8.3
|
1.0
|
O
|
E:HOH608
|
4.0
|
54.7
|
1.0
|
OG1
|
E:THR90
|
4.0
|
2.3
|
1.0
|
PA
|
E:ADP600
|
4.0
|
3.3
|
1.0
|
O2B
|
E:ADP600
|
4.1
|
2.2
|
1.0
|
N
|
E:GLY88
|
4.1
|
2.0
|
1.0
|
CG
|
E:ASP87
|
4.4
|
2.9
|
1.0
|
N
|
E:THR90
|
4.4
|
2.0
|
1.0
|
N
|
E:THR89
|
4.5
|
2.0
|
1.0
|
OD1
|
E:ASP52
|
4.5
|
5.6
|
1.0
|
N
|
E:GLY53
|
4.6
|
2.1
|
1.0
|
CB
|
E:THR90
|
4.6
|
2.0
|
1.0
|
CA
|
E:GLY88
|
4.7
|
2.0
|
1.0
|
O1A
|
E:ADP600
|
4.8
|
2.0
|
1.0
|
CA
|
E:ASP87
|
4.8
|
2.1
|
1.0
|
C
|
E:ASP87
|
4.9
|
2.0
|
1.0
|
CB
|
E:THR89
|
4.9
|
2.0
|
1.0
|
C
|
E:GLY88
|
4.9
|
2.0
|
1.0
|
|
Aluminium binding site 6 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 6 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 6 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Al602
b:8.3
occ:1.00
|
AL
|
F:AF3602
|
0.0
|
8.3
|
1.0
|
F2
|
F:AF3602
|
1.8
|
9.8
|
1.0
|
F3
|
F:AF3602
|
1.8
|
2.0
|
1.0
|
F1
|
F:AF3602
|
1.9
|
2.2
|
1.0
|
O3B
|
F:ADP600
|
2.3
|
3.7
|
1.0
|
O1B
|
F:ADP600
|
2.7
|
2.0
|
1.0
|
PB
|
F:ADP600
|
2.9
|
2.0
|
1.0
|
MG
|
F:MG601
|
3.0
|
2.0
|
1.0
|
OD1
|
F:ASP87
|
3.0
|
2.5
|
1.0
|
O2A
|
F:ADP600
|
3.3
|
2.2
|
1.0
|
O3A
|
F:ADP600
|
3.6
|
2.1
|
1.0
|
OG1
|
F:THR89
|
3.6
|
2.0
|
1.0
|
K
|
F:K603
|
3.7
|
15.4
|
1.0
|
OD2
|
F:ASP398
|
4.0
|
8.4
|
1.0
|
PA
|
F:ADP600
|
4.0
|
2.2
|
1.0
|
O2B
|
F:ADP600
|
4.1
|
2.0
|
1.0
|
N
|
F:GLY88
|
4.2
|
2.0
|
1.0
|
OG1
|
F:THR90
|
4.2
|
2.2
|
1.0
|
CG
|
F:ASP87
|
4.2
|
2.8
|
1.0
|
N
|
F:THR90
|
4.5
|
2.0
|
1.0
|
N
|
F:THR89
|
4.5
|
2.5
|
1.0
|
OD1
|
F:ASP52
|
4.6
|
5.8
|
1.0
|
N
|
F:GLY53
|
4.7
|
2.1
|
1.0
|
CA
|
F:ASP87
|
4.7
|
2.1
|
1.0
|
O1A
|
F:ADP600
|
4.8
|
2.0
|
1.0
|
CB
|
F:THR90
|
4.8
|
2.0
|
1.0
|
C
|
F:ASP87
|
4.8
|
2.0
|
1.0
|
CA
|
F:GLY88
|
4.9
|
2.0
|
1.0
|
CB
|
F:THR89
|
4.9
|
2.0
|
1.0
|
|
Aluminium binding site 7 out
of 7 in 1svt
Go back to
Aluminium Binding Sites List in 1svt
Aluminium binding site 7 out
of 7 in the Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 7 of Crystal Structure of GROEL14-GROES7-(Adp-Alfx)7 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Al602
b:8.0
occ:1.00
|
AL
|
G:AF3602
|
0.0
|
8.0
|
1.0
|
F3
|
G:AF3602
|
1.8
|
2.0
|
1.0
|
F2
|
G:AF3602
|
1.8
|
9.5
|
1.0
|
F1
|
G:AF3602
|
1.9
|
2.4
|
1.0
|
O3B
|
G:ADP600
|
2.3
|
3.7
|
1.0
|
O1B
|
G:ADP600
|
2.7
|
2.0
|
1.0
|
PB
|
G:ADP600
|
2.9
|
2.5
|
1.0
|
MG
|
G:MG601
|
2.9
|
2.0
|
1.0
|
OD1
|
G:ASP87
|
3.1
|
2.6
|
1.0
|
O2A
|
G:ADP600
|
3.4
|
2.4
|
1.0
|
O3A
|
G:ADP600
|
3.5
|
2.2
|
1.0
|
OG1
|
G:THR89
|
3.6
|
2.4
|
1.0
|
O
|
G:HOH618
|
3.7
|
31.9
|
1.0
|
K
|
G:K603
|
3.8
|
16.7
|
1.0
|
OD2
|
G:ASP398
|
3.8
|
7.9
|
1.0
|
OG1
|
G:THR90
|
3.9
|
2.0
|
1.0
|
PA
|
G:ADP600
|
4.1
|
2.0
|
1.0
|
N
|
G:GLY88
|
4.1
|
2.0
|
1.0
|
O2B
|
G:ADP600
|
4.2
|
2.0
|
1.0
|
CG
|
G:ASP87
|
4.4
|
2.7
|
1.0
|
N
|
G:THR89
|
4.4
|
2.1
|
1.0
|
N
|
G:THR90
|
4.5
|
2.0
|
1.0
|
OD1
|
G:ASP52
|
4.5
|
5.1
|
1.0
|
CA
|
G:ASP87
|
4.7
|
2.0
|
1.0
|
N
|
G:GLY53
|
4.7
|
2.3
|
1.0
|
CB
|
G:THR90
|
4.7
|
2.1
|
1.0
|
O1A
|
G:ADP600
|
4.8
|
2.0
|
1.0
|
C
|
G:ASP87
|
4.8
|
2.0
|
1.0
|
CA
|
G:GLY88
|
4.8
|
2.0
|
1.0
|
CB
|
G:THR89
|
4.9
|
2.0
|
1.0
|
C
|
G:GLY88
|
5.0
|
2.3
|
1.0
|
|
Reference:
C.Chaudhry,
A.L.Horwich,
A.T.Brunger,
P.D.Adams.
Exploring the Structural Dynamics of the E.Coli Chaperonin Groel Using Translation-Libration-Screw Crystallographic Refinement of Intermediate States. J.Mol.Biol. V. 342 229 2004.
ISSN: ISSN 0022-2836
PubMed: 15313620
DOI: 10.1016/J.JMB.2004.07.015
Page generated: Wed Jul 10 09:25:50 2024
|