The binding sites of Aluminium atom in the structure of Crystal Structure of the KIF1A Motor Domain Complexed With Adp-Mg-Alfx (pdb code 1vfx). This binding sites where shown with 5.0 Angstroms radius around Aluminium atom.
The 1vfx structure was solved by R.NITTA, M.KIKKAWA, Y.OKADA, N.HIROKAWA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
| Resolution (A) | 22.2-2.5 | | Space group | P212121 | | a (A) | 41.934 | | b (A) | 54.649 | | c (A) | 156.784 | | alpha (°) | 90.00 | | beta (°) | 90.00 | | gamma (°) | 90.00 | | Rfactor (%) | 23.8 | | Rfree (%) | 29.4 |
|
Aluminium binding site 1 out of 1 in 1vfx
| 
Click to enlarge | 
Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Aluminium in the PDB 1vfx. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Aluminium atom, shown by VdW sphere
Residues shown as a stick model or VDW spheres: A: Lys103, A: Ser104, A: Thr213, A: Ser215, A: Asp248, A: Mg501, A: Af3400, A: Adp500, A: Hoh504, | conact list:
| Atom | Atom | Distance (A) | | Al | CE A:Lys103 | 4.89 | | Al | NZ A:Lys103 | 4.78 | | Al | OG A:Ser104 | 4.45 | | Al | O A:Thr213 | 4.93 | | Al | CB A:Ser215 | 3.19 | | Al | OG A:Ser215 | 2.72 | | Al | CA A:Ser215 | 4.63 | | Al | OD1 A:Asp248 | 4.79 | | Al | MG A:Mg501 | 2.70 | | Al | F3 A:Af3400 | 1.89 | | Al | F2 A:Af3400 | 1.79 | | Al | AL A:Af3400 | 0.00 | | Al | F1 A:Af3400 | 1.86 | | Al | O3B A:Adp500 | 2.28 | | Al | O2A A:Adp500 | 4.63 | | Al | O1B A:Adp500 | 4.39 | | Al | PB A:Adp500 | 3.70 | | Al | O2B A:Adp500 | 4.27 | | Al | O3A A:Adp500 | 4.90 | | Al | O A:Hoh504 | 3.77 |
| interactive model:
|
|