Aluminium in PDB 2b92: Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3

The structure of Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3, PDB code: 2b92 was solved by A.Ghosh, G.J.K.Praefcke, L.Renault, A.Wittinghofer, C.Herrmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	148.820, 103.921, 55.485, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 25

The structure of Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3 also contains other interesting chemical elements:

Fluorine	(F)	6 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Aluminium atom in the Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3 (pdb code 2b92). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3, PDB code: 2b92:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in the Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Al594 b:32.3 occ:1.00 AL A:AF3594 0.0 32.3 1.0 F1 A:AF3594 1.8 39.0 1.0 F3 A:AF3594 1.8 38.5 1.0 F2 A:AF3594 1.8 37.8 1.0 O3B A:GDP593 2.0 46.7 1.0 O A:HOH602 2.2 77.1 1.0 PB A:GDP593 3.2 48.0 1.0 MG A:MG595 3.4 40.1 1.0 O2B A:GDP593 3.4 56.8 1.0 N A:HIS74 3.8 54.7 1.0 N A:THR75 3.9 53.5 1.0 O1B A:GDP593 4.0 51.9 1.0 NH2 A:ARG48 4.1 46.6 1.0 NE A:ARG48 4.1 44.5 1.0 CB A:THR75 4.2 52.2 1.0 N A:GLY100 4.2 41.1 1.0 N A:ARG48 4.2 38.5 1.0 O A:THR75 4.3 52.6 1.0 O3A A:GDP593 4.4 53.7 1.0 OG1 A:THR75 4.4 51.7 1.0 CA A:THR75 4.5 52.3 1.0 CB A:TYR47 4.6 37.8 1.0 CA A:SER73 4.6 54.2 1.0 NZ A:LYS51 4.6 29.8 1.0 CA A:HIS74 4.6 54.6 1.0 CZ A:ARG48 4.6 45.8 1.0 CB A:SER73 4.6 54.1 1.0 CA A:GLY100 4.6 40.4 1.0 O2A A:GDP593 4.7 52.3 1.0 C A:HIS74 4.7 54.4 1.0 CB A:HIS74 4.7 54.8 1.0 C A:SER73 4.7 54.4 1.0 CA A:TYR47 4.7 38.1 1.0 C A:THR75 4.9 52.8 1.0 O A:THR98 5.0 42.3 1.0

Aluminium binding site 2 out of 2 in the Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Crystal-Structure of the N-Terminal Large Gtpase Domain of Human Guanylate Binding Protein 1 (HGBP1) in Complex with Gdp/ALF3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Al594 b:30.4 occ:1.00 AL B:AF3594 0.0 30.4 1.0 F1 B:AF3594 1.8 37.5 1.0 F3 B:AF3594 1.8 34.6 1.0 F2 B:AF3594 1.8 36.5 1.0 O3B B:GDP593 2.0 47.3 1.0 O B:HOH599 2.1 64.2 1.0 PB B:GDP593 3.2 47.9 1.0 MG B:MG595 3.3 43.6 1.0 O2B B:GDP593 3.3 48.8 1.0 N B:HIS74 3.8 55.3 1.0 NH2 B:ARG48 3.8 47.9 1.0 N B:THR75 3.9 54.4 1.0 O1B B:GDP593 4.0 53.2 1.0 NE B:ARG48 4.1 44.7 1.0 N B:ARG48 4.1 39.0 1.0 N B:GLY100 4.2 41.6 1.0 CB B:THR75 4.3 53.0 1.0 OG1 B:THR75 4.3 52.4 1.0 O3A B:GDP593 4.3 55.8 1.0 CB B:TYR47 4.4 38.1 1.0 NZ B:LYS51 4.4 29.5 1.0 CZ B:ARG48 4.4 45.9 1.0 O B:THR75 4.4 53.4 1.0 CA B:HIS74 4.5 55.3 1.0 CB B:HIS74 4.6 55.3 1.0 CA B:TYR47 4.6 38.6 1.0 CA B:SER73 4.6 54.3 1.0 CA B:THR75 4.6 53.3 1.0 CA B:GLY100 4.6 40.9 1.0 CB B:SER73 4.6 54.3 1.0 C B:HIS74 4.7 55.3 1.0 C B:SER73 4.7 54.8 1.0 O2A B:GDP593 4.7 55.8 1.0 C B:TYR47 4.9 39.1 1.0 CA B:ARG48 4.9 38.8 1.0 CE B:LYS51 5.0 29.4 1.0

A.Ghosh, G.J.Praefcke, L.Renault, A.Wittinghofer, C.Herrmann. How Guanylate-Binding Proteins Achieve Assembly-Stimulated Processive Cleavage of Gtp to Gmp. Nature V. 440 101 2006.
ISSN: ISSN 0028-0836
PubMed: 16511497
DOI: 10.1038/NATURE04510