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Aluminium in PDB 2cnw: GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy

Protein crystallography data

The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw was solved by P.J.Focia, J.Gawronski-Salerno, J.S.Coon V, D.M.Freymann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.68 / 2.39
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 188.686, 188.686, 44.588, 90.00, 90.00, 120.00
R / Rfree (%) 18.3 / 25.3

Other elements in 2cnw:

The structure of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy also contains other interesting chemical elements:

Fluorine (F) 24 atoms
Magnesium (Mg) 6 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy (pdb code 2cnw). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 6 binding sites of Aluminium where determined in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy, PDB code: 2cnw:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6;

Aluminium binding site 1 out of 6 in 2cnw

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Aluminium binding site 1 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1007

b:16.6
occ:1.00
 AL A:ALF1007 0.0 16.6 1.0
F1 A:ALF1007 1.8 18.1 1.0
F3 A:ALF1007 1.8 13.6 1.0
F4 A:ALF1007 1.8 16.5 1.0
F2 A:ALF1007 1.8 17.8 1.0
O2B A:GDP1001 1.9 12.5 1.0
O A:HOH2048 2.0 11.1 1.0
PB A:GDP1001 3.2 10.6 1.0
MG A:MG1002 3.4 12.8 1.0
O3B A:GDP1001 3.5 9.5 1.0
O A:HOH2085 3.6 13.7 1.0
NH1 A:ARG138 3.8 12.3 1.0
N A:GLY190 3.8 19.4 1.0
O3' D:GDP1001 3.9 15.3 1.0
N A:GLY108 3.9 15.7 1.0
O1B A:GDP1001 3.9 8.9 1.0
NZ A:LYS111 3.9 12.9 1.0
OD2 A:ASP135 4.1 20.7 1.0
CD A:ARG138 4.1 18.6 1.0
O D:HOH2085 4.3 14.0 1.0
O3A A:GDP1001 4.3 10.1 1.0
O A:HOH2058 4.4 13.1 1.0
O A:HOH2038 4.4 10.9 1.0
CA A:GLY190 4.5 19.4 1.0
CE A:LYS111 4.5 15.1 1.0
CA A:GLY108 4.5 14.9 1.0
C3' D:GDP1001 4.7 16.4 1.0
CZ A:ARG138 4.8 16.5 1.0
C4' D:GDP1001 4.8 16.1 1.0
C A:ALA189 4.8 19.3 1.0
CA A:GLN107 4.8 16.4 1.0
CA A:ALA189 4.9 19.1 1.0
C A:GLN107 4.9 16.4 1.0
NE A:ARG138 4.9 17.3 1.0

Aluminium binding site 2 out of 6 in 2cnw

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Aluminium binding site 2 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1007

b:18.9
occ:1.00
 AL B:ALF1007 0.0 18.9 1.0
F2 B:ALF1007 1.8 19.1 1.0
F3 B:ALF1007 1.8 19.9 1.0
F1 B:ALF1007 1.8 19.6 1.0
F4 B:ALF1007 1.8 20.4 1.0
O2B B:GDP1001 1.9 15.5 1.0
O B:HOH2036 2.0 23.0 1.0
PB B:GDP1001 3.1 14.2 1.0
MG B:MG1002 3.4 17.2 1.0
O3B B:GDP1001 3.5 13.3 1.0
O B:HOH2064 3.7 14.8 1.0
O1B B:GDP1001 3.8 13.5 1.0
NH1 B:ARG138 3.8 20.7 1.0
N B:GLY190 3.9 23.1 1.0
O3' E:GDP1001 3.9 17.8 1.0
NZ B:LYS111 3.9 19.5 1.0
N B:GLY108 4.0 17.8 1.0
OD2 B:ASP135 4.1 22.1 1.0
CD B:ARG138 4.3 19.8 1.0
O B:HOH2046 4.3 14.2 1.0
O3A B:GDP1001 4.3 14.1 1.0
O B:HOH2027 4.4 14.3 1.0
CE B:LYS111 4.4 17.6 1.0
O E:HOH2089 4.4 19.9 1.0
CA B:GLY190 4.4 23.2 1.0
CA B:GLN107 4.7 17.9 1.0
CA B:GLY108 4.7 17.5 1.0
C4' E:GDP1001 4.9 18.4 1.0
C3' E:GDP1001 4.9 18.4 1.0
CZ B:ARG138 4.9 21.6 1.0
C B:GLN107 4.9 18.1 1.0
C B:ALA189 4.9 22.8 1.0
CA B:ALA189 5.0 22.4 1.0

Aluminium binding site 3 out of 6 in 2cnw

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Aluminium binding site 3 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al1007

b:18.8
occ:1.00
 AL C:ALF1007 0.0 18.8 1.0
F1 C:ALF1007 1.8 22.4 1.0
F4 C:ALF1007 1.8 20.4 1.0
F3 C:ALF1007 1.8 18.8 1.0
F2 C:ALF1007 1.8 19.5 1.0
O2B C:GDP1001 1.9 16.5 1.0
O C:HOH2054 1.9 24.1 1.0
PB C:GDP1001 3.1 14.8 1.0
MG C:MG1002 3.3 18.5 1.0
O3B C:GDP1001 3.4 15.5 1.0
O1B C:GDP1001 3.8 16.5 1.0
O C:HOH2082 3.8 18.6 1.0
NH1 C:ARG138 3.8 21.6 1.0
N C:GLY108 3.9 18.9 1.0
N C:GLY190 3.9 24.6 1.0
NZ C:LYS111 3.9 15.7 1.0
O3' F:GDP1001 4.0 18.1 1.0
O C:HOH2117 4.2 19.0 1.0
OD2 C:ASP135 4.2 29.4 1.0
CD C:ARG138 4.2 24.5 1.0
O C:HOH2053 4.2 16.9 1.0
O3A C:GDP1001 4.3 17.0 1.0
O F:HOH2064 4.4 14.0 1.0
CA C:GLY190 4.4 24.6 1.0
CA C:GLY108 4.5 17.8 1.0
CE C:LYS111 4.6 19.0 1.0
CA C:GLN107 4.7 20.8 1.0
C C:GLN107 4.8 20.0 1.0
CZ C:ARG138 4.8 21.8 1.0
C C:ALA189 4.9 24.7 1.0
CA C:ALA189 4.9 24.4 1.0
C4' F:GDP1001 4.9 17.9 1.0
C3' F:GDP1001 5.0 18.1 1.0
NE C:ARG138 5.0 23.8 1.0

Aluminium binding site 4 out of 6 in 2cnw

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Aluminium binding site 4 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al1007

b:12.9
occ:1.00
 AL D:ALF1007 0.0 12.9 1.0
F2 D:ALF1007 1.8 16.9 1.0
F1 D:ALF1007 1.8 12.1 1.0
F4 D:ALF1007 1.8 14.5 1.0
F3 D:ALF1007 1.8 13.5 1.0
O2B D:GDP1001 1.9 9.8 1.0
O D:HOH2033 2.0 24.0 1.0
PB D:GDP1001 3.1 10.3 1.0
O3B D:GDP1001 3.3 10.7 1.0
MG D:MG1002 3.4 13.2 1.0
O3' A:GDP1001 3.7 11.4 1.0
O D:HOH2057 3.7 14.3 1.0
N D:GLY194 3.8 19.8 1.0
O D:HOH2099 3.8 9.6 1.0
O1B D:GDP1001 3.9 10.5 1.0
NH1 D:ARG142 4.0 17.2 1.0
OD2 D:ASP139 4.0 18.8 1.0
N D:GLY112 4.1 14.2 1.0
NZ D:LYS115 4.1 18.9 1.0
CA D:GLY194 4.1 20.3 1.0
O D:HOH2098 4.3 9.7 1.0
O3A D:GDP1001 4.3 13.2 1.0
O D:HOH2035 4.3 12.5 1.0
O A:HOH2117 4.4 12.9 1.0
C3' A:GDP1001 4.7 12.4 1.0
CD D:ARG142 4.7 15.3 1.0
CA D:GLY112 4.8 13.9 1.0
CA D:ASN111 4.8 14.2 1.0
C4' A:GDP1001 4.8 12.0 1.0
C D:ALA193 4.9 19.4 1.0
CE D:LYS115 4.9 17.3 1.0
C D:ASN111 5.0 14.1 1.0
O2A D:GDP1001 5.0 12.5 1.0

Aluminium binding site 5 out of 6 in 2cnw

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Aluminium binding site 5 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al1007

b:15.1
occ:1.00
 AL E:ALF1007 0.0 15.1 1.0
F1 E:ALF1007 1.8 16.1 1.0
F2 E:ALF1007 1.8 11.4 1.0
F4 E:ALF1007 1.8 16.0 1.0
F3 E:ALF1007 1.8 14.3 1.0
O E:HOH2031 1.8 13.0 1.0
O2B E:GDP1001 1.9 13.6 1.0
PB E:GDP1001 3.2 12.6 1.0
MG E:MG1002 3.5 15.4 1.0
O3B E:GDP1001 3.6 15.2 1.0
O3' B:GDP1001 3.6 13.8 1.0
O E:HOH2056 3.7 12.8 1.0
N E:GLY194 3.7 19.8 1.0
NH1 E:ARG142 3.7 18.0 1.0
O1B E:GDP1001 3.9 16.9 1.0
N E:GLY112 3.9 19.7 1.0
O B:HOH2040 3.9 16.1 1.0
OD2 E:ASP139 4.0 14.2 1.0
CA E:GLY194 4.1 19.7 1.0
NZ E:LYS115 4.1 13.2 1.0
O B:HOH2093 4.2 14.7 1.0
O3A E:GDP1001 4.3 14.9 1.0
O E:HOH2030 4.3 10.2 1.0
O E:HOH2094 4.3 12.4 1.0
C3' B:GDP1001 4.6 15.7 1.0
CA E:GLY112 4.6 19.7 1.0
CA E:ASN111 4.7 19.5 1.0
ND2 E:ASN111 4.8 17.0 1.0
CD E:ARG142 4.8 14.4 1.0
C E:ASN111 4.9 19.5 1.0
C4' B:GDP1001 4.9 15.7 1.0
C E:ALA193 4.9 19.8 1.0
CE E:LYS115 4.9 15.4 1.0
CZ E:ARG142 5.0 17.8 1.0
CG E:ASP139 5.0 20.0 1.0

Aluminium binding site 6 out of 6 in 2cnw

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Aluminium binding site 6 out of 6 in the GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of GDPALF4 Complex of the Srp Gtpases Ffh and Ftsy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al1007

b:15.4
occ:1.00
 AL F:ALF1007 0.0 15.4 1.0
F1 F:ALF1007 1.8 15.0 1.0
F2 F:ALF1007 1.8 15.1 1.0
F4 F:ALF1007 1.8 16.7 1.0
F3 F:ALF1007 1.8 16.8 1.0
O2B F:GDP1001 1.9 16.6 1.0
O F:HOH2028 2.0 16.9 1.0
PB F:GDP1001 3.1 15.4 1.0
MG F:MG1002 3.5 15.9 1.0
O3B F:GDP1001 3.5 13.4 1.0
O3' C:GDP1001 3.6 14.7 1.0
NH1 F:ARG142 3.7 16.3 1.0
O F:HOH2069 3.9 17.5 1.0
N F:GLY194 3.9 22.3 1.0
N F:GLY112 3.9 21.0 1.0
O F:HOH2046 3.9 15.3 1.0
NZ F:LYS115 3.9 14.4 1.0
O1B F:GDP1001 4.0 17.3 1.0
OD2 F:ASP139 4.1 22.0 1.0
O F:HOH2071 4.2 15.4 1.0
O3A F:GDP1001 4.3 15.5 1.0
O F:HOH2027 4.3 13.3 1.0
CA F:GLY194 4.3 22.2 1.0
O C:HOH2109 4.3 21.2 1.0
C3' C:GDP1001 4.5 15.0 1.0
CA F:GLY112 4.6 20.7 1.0
CA F:ASN111 4.7 19.9 1.0
C4' C:GDP1001 4.7 14.3 1.0
CD F:ARG142 4.8 20.1 1.0
ND2 F:ASN111 4.8 18.7 1.0
C F:ASN111 4.8 20.6 1.0
CZ F:ARG142 4.9 18.6 1.0
CE F:LYS115 4.9 17.0 1.0
C F:ALA193 5.0 22.5 1.0

Reference:

P.J.Focia, J.Gawronski-Salerno, J.S.Coon V, D.M.Freymann. Structure of A Gdp:Alf(4) Complex of the Srp Gtpases Ffh and Ftsy, and Identification of A Peripheral Nucleotide Interaction Site. J.Mol.Biol. V. 360 631 2006.
ISSN: ISSN 0022-2836
PubMed: 16780874
DOI: 10.1016/J.JMB.2006.05.031
Page generated: Sat Dec 12 01:31:34 2020

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