Atomistry » Aluminium » PDB 1vfx-2x2f » 2d33
Atomistry »
  Aluminium »
    PDB 1vfx-2x2f »
      2d33 »

Aluminium in PDB 2d33: Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride

Enzymatic activity of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride

All present enzymatic activity of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride:
6.3.2.2;

Protein crystallography data

The structure of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride, PDB code: 2d33 was solved by T.Hibi, M.Nakayama, H.Nii, Y.Kurokawa, H.Katano, J.Oda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.60
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 325.226, 325.226, 105.181, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 19.1

Other elements in 2d33:

The structure of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride also contains other interesting chemical elements:

Fluorine (F) 12 atoms
Magnesium (Mg) 13 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride (pdb code 2d33). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride, PDB code: 2d33:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in 2d33

Go back to Aluminium Binding Sites List in 2d33
Aluminium binding site 1 out of 4 in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al522

b:55.6
occ:1.00
 AL A:AF3522 0.0 55.6 1.0
F2 A:AF3522 1.6 51.6 1.0
F3 A:AF3522 1.8 49.7 1.0
F1 A:AF3522 1.8 52.0 1.0
O1B A:ADP521 2.4 33.9 1.0
MG A:MG525 2.5 26.8 1.0
MG A:MG523 3.0 40.9 1.0
OE2 A:GLU519 3.0 71.5 1.0
O A:HOH560 3.4 25.1 1.0
N A:CYS520 3.5 52.9 1.0
PB A:ADP521 3.7 33.3 1.0
MG A:MG524 3.7 34.6 1.0
OE1 A:GLU27 3.9 30.1 1.0
OE1 A:GLU67 4.0 34.9 1.0
OD1 A:ASP60 4.0 37.3 1.0
O2B A:ADP521 4.1 33.8 1.0
CD A:GLU519 4.2 71.2 1.0
OE2 A:GLU67 4.2 34.2 1.0
O A:HOH700 4.4 43.0 1.0
O2A A:ADP521 4.4 34.5 1.0
O3B A:ADP521 4.4 30.9 1.0
CD A:GLU67 4.6 32.0 1.0
OE1 A:GLU519 4.7 71.4 1.0
CA A:CYS520 4.7 53.3 1.0
O3A A:ADP521 4.8 32.5 1.0
CE1 A:HIS150 5.0 25.5 1.0

Aluminium binding site 2 out of 4 in 2d33

Go back to Aluminium Binding Sites List in 2d33
Aluminium binding site 2 out of 4 in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1522

b:60.7
occ:1.00
 AL B:AF31522 0.0 60.7 1.0
F2 B:AF31522 1.6 59.6 1.0
F3 B:AF31522 1.8 58.3 1.0
F1 B:AF31522 1.8 58.0 1.0
O1B B:ADP1521 2.2 38.8 1.0
MG B:MG1525 2.6 37.8 1.0
OE2 B:GLU1519 3.0 51.0 1.0
MG B:MG1523 3.1 45.8 1.0
PB B:ADP1521 3.2 36.7 1.0
OE1 B:GLU27 3.3 36.7 1.0
MG B:MG1524 3.3 36.4 1.0
O3B B:ADP1521 3.7 37.7 1.0
O B:HOH1589 3.7 44.1 1.0
O B:HOH1591 3.8 47.7 1.0
CD B:GLU1519 3.8 51.1 1.0
O2B B:ADP1521 3.9 37.2 1.0
N B:CYS1520 3.9 48.0 1.0
OD1 B:ASP60 4.0 43.1 1.0
OE1 B:GLU1519 4.0 50.0 1.0
O2A B:ADP1521 4.2 37.3 1.0
OE1 B:GLU67 4.3 38.7 1.0
OE2 B:GLU67 4.3 39.8 1.0
CD B:GLU27 4.4 35.6 1.0
O3A B:ADP1521 4.5 36.3 1.0
CE1 B:HIS150 4.7 31.1 1.0
CD B:GLU67 4.7 38.1 1.0
OE2 B:GLU27 4.8 35.6 1.0
ND1 B:HIS150 4.8 30.3 1.0
O B:HOH1554 4.8 45.6 1.0
PA B:ADP1521 5.0 37.2 1.0

Aluminium binding site 3 out of 4 in 2d33

Go back to Aluminium Binding Sites List in 2d33
Aluminium binding site 3 out of 4 in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al2522

b:62.6
occ:1.00
 AL C:AF32522 0.0 62.6 1.0
F2 C:AF32522 1.6 60.3 1.0
F3 C:AF32522 1.8 60.2 1.0
F1 C:AF32522 1.8 59.9 1.0
O1B C:ADP2521 2.1 42.2 1.0
MG C:MG2525 2.8 45.8 1.0
MG C:MG2524 3.1 47.3 1.0
OE2 C:GLU2519 3.1 67.2 1.0
PB C:ADP2521 3.2 41.6 1.0
MG C:MG2523 3.2 46.3 1.0
OE1 C:GLU27 3.4 39.9 1.0
O2B C:ADP2521 3.7 41.9 1.0
O3B C:ADP2521 3.8 42.0 1.0
N C:CYS2520 3.8 55.2 1.0
OE1 C:GLU2519 3.9 67.4 1.0
O C:HOH2552 3.9 46.4 1.0
CD C:GLU2519 3.9 67.6 1.0
O2A C:ADP2521 4.3 46.0 1.0
OE2 C:GLU67 4.3 44.1 1.0
OD1 C:ASP60 4.3 49.9 1.0
O3A C:ADP2521 4.5 43.3 1.0
CD C:GLU27 4.5 39.9 1.0
OE1 C:GLU67 4.5 45.0 1.0
CE1 C:HIS150 4.6 38.9 1.0
ND1 C:HIS150 4.7 38.5 1.0
CD C:GLU67 4.9 43.5 1.0
OE2 C:GLU27 4.9 40.2 1.0
OE2 C:GLU328 5.0 41.0 1.0
CA C:CYS2520 5.0 55.4 1.0

Aluminium binding site 4 out of 4 in 2d33

Go back to Aluminium Binding Sites List in 2d33
Aluminium binding site 4 out of 4 in the Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Crystal Structure of Gamma-Glutamylcysteine Synthetase Complexed with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al3522

b:62.7
occ:1.00
 AL D:AF33522 0.0 62.7 1.0
F2 D:AF33522 1.7 58.8 1.0
F1 D:AF33522 1.8 58.8 1.0
F3 D:AF33522 1.8 57.0 1.0
O1B D:ADP3521 2.2 37.2 1.0
MG D:MG3525 2.5 37.6 1.0
MG D:MG3523 2.9 38.2 1.0
OE2 D:GLU3519 2.9 49.5 1.0
OE1 D:GLU27 3.3 33.1 1.0
PB D:ADP3521 3.3 37.0 1.0
O D:HOH3555 3.4 30.2 1.0
MG D:MG3524 3.4 35.6 1.0
O D:HOH3593 3.6 37.7 1.0
N D:CYS3520 3.7 53.0 1.0
OD1 D:ASP60 3.8 40.1 1.0
O3B D:ADP3521 3.9 36.8 1.0
CD D:GLU3519 3.9 49.3 1.0
OE2 D:GLU67 3.9 37.8 1.0
OE1 D:GLU3519 4.1 48.9 1.0
O2B D:ADP3521 4.1 37.4 1.0
OE1 D:GLU67 4.2 39.4 1.0
O2A D:ADP3521 4.3 37.4 1.0
CD D:GLU27 4.4 32.2 1.0
CD D:GLU67 4.5 37.8 1.0
O3A D:ADP3521 4.6 37.0 1.0
CE1 D:HIS150 4.7 34.1 1.0
ND1 D:HIS150 4.8 33.6 1.0
OE2 D:GLU27 4.9 33.4 1.0
CA D:CYS3520 4.9 53.6 1.0
OE2 D:GLU29 5.0 38.1 1.0

Reference:

T.Hibi, M.Nakayama, H.Nii, Y.Kurokawa, H.Katano, J.Oda. Structural Basis of Efficient Coupling Between Peptide Ligation and Atp Hydrolysis By Gamma-Gluatamylcysteine Synthetase To Be Published.
Page generated: Wed Jul 10 09:29:25 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy