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Aluminium in PDB 2g08: X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride

Enzymatic activity of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride

All present enzymatic activity of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride:
3.1.1.5;

Protein crystallography data

The structure of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride, PDB code: 2g08 was solved by E.Bitto, C.A.Bingman, G.E.Wesenberg, G.N.Phillips Jr., Center Foreukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.52 / 2.35
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 135.044, 135.044, 39.049, 90.00, 90.00, 120.00
R / Rfree (%) 19 / 26

Other elements in 2g08:

The structure of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride (pdb code 2g08). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride, PDB code: 2g08:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 2g08

Go back to Aluminium Binding Sites List in 2g08
Aluminium binding site 1 out of 2 in the X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al501

b:35.7
occ:1.00
 AL A:AF3501 0.0 35.7 1.0
F3 A:AF3501 1.7 35.4 1.0
F1 A:AF3501 1.7 32.3 1.0
F2 A:AF3501 1.7 35.8 1.0
O A:HOH502 1.7 32.1 1.0
OD1 A:ASP49 2.0 38.4 1.0
O A:HOH664 3.0 24.8 1.0
CG A:ASP49 3.1 39.1 1.0
MG A:MG500 3.4 35.1 1.0
OD2 A:ASP49 3.6 39.9 1.0
N A:ASP51 3.7 39.5 1.0
OG A:SER164 3.8 41.1 1.0
O A:HOH619 3.8 24.2 1.0
NZ A:LYS213 3.8 39.6 1.0
N A:PHE50 3.9 40.0 1.0
OD2 A:ASP51 3.9 45.1 1.0
N A:ALA165 4.0 41.4 1.0
CB A:ASP51 4.0 40.8 1.0
CA A:SER164 4.3 40.6 1.0
O A:HOH506 4.3 41.0 1.0
CA A:ASP51 4.4 40.9 1.0
O A:ASP51 4.4 41.6 1.0
CB A:ASP49 4.4 37.4 1.0
CG A:ASP51 4.4 41.1 1.0
CB A:SER164 4.4 40.5 1.0
C A:PHE50 4.5 39.5 1.0
O A:HOH503 4.5 25.6 1.0
CA A:PHE50 4.6 39.4 1.0
C A:SER164 4.6 41.4 1.0
O A:PHE163 4.7 38.8 1.0
N A:GLY166 4.7 41.5 1.0
CB A:PHE50 4.8 39.2 1.0
CA A:ALA165 4.8 41.6 1.0
CB A:ALA165 4.8 41.7 1.0
CA A:ASP49 4.8 38.5 1.0
C A:ASP49 4.8 39.0 1.0
O A:HOH716 4.9 42.7 1.0
C A:ASP51 4.9 41.2 1.0
CE A:LYS213 4.9 36.8 1.0

Aluminium binding site 2 out of 2 in 2g08

Go back to Aluminium Binding Sites List in 2g08
Aluminium binding site 2 out of 2 in the X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of X-Ray Structure of Mouse Pyrimidine 5'-Nucleotidase Type 1, Product- Transition Complex Analog with Aluminum Fluoride within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al601

b:38.8
occ:1.00
 AL B:AF3601 0.0 38.8 1.0
F3 B:AF3601 1.7 38.8 1.0
F2 B:AF3601 1.7 34.9 1.0
F1 B:AF3601 1.7 37.9 1.0
O B:HOH831 1.8 33.1 1.0
OD1 B:ASP49 2.0 39.9 1.0
CG B:ASP49 3.0 40.0 1.0
O B:HOH679 3.2 31.3 1.0
MG B:MG600 3.4 34.9 1.0
OD2 B:ASP49 3.4 41.8 1.0
N B:ASP51 3.7 39.5 1.0
NZ B:LYS213 3.8 39.8 1.0
OG B:SER164 3.8 39.7 1.0
O B:HOH602 3.8 23.6 1.0
N B:PHE50 3.9 39.8 1.0
CB B:ASP51 3.9 40.4 1.0
OD2 B:ASP51 4.0 44.5 1.0
N B:ALA165 4.0 41.3 1.0
O B:HOH761 4.3 38.2 1.0
CA B:SER164 4.3 40.4 1.0
CA B:ASP51 4.3 40.8 1.0
CB B:ASP49 4.3 37.7 1.0
O B:ASP51 4.3 41.8 1.0
CG B:ASP51 4.4 41.0 1.0
CB B:SER164 4.4 39.9 1.0
C B:PHE50 4.5 39.5 1.0
CA B:PHE50 4.6 39.3 1.0
O B:HOH603 4.6 32.0 1.0
O B:PHE163 4.7 38.9 1.0
C B:SER164 4.7 41.2 1.0
C B:ASP49 4.8 39.0 1.0
CA B:ASP49 4.8 38.6 1.0
N B:GLY166 4.8 41.4 1.0
CE B:LYS213 4.8 38.0 1.0
C B:ASP51 4.8 41.2 1.0
CB B:PHE50 4.9 38.9 1.0
CA B:ALA165 4.9 41.6 1.0
CB B:ALA165 4.9 41.7 1.0
OD1 B:ASP242 5.0 34.9 1.0

Reference:

E.Bitto, C.A.Bingman, G.E.Wesenberg, J.G.Mccoy, G.N.Phillips. Structure of Pyrimidine 5'-Nucleotidase Type 1. Insight Into Mechanism of Action and Inhibition During Lead Poisoning. J.Biol.Chem. V. 281 20521 2006.
ISSN: ISSN 0021-9258
PubMed: 16672222
DOI: 10.1074/JBC.M602000200
Page generated: Wed Jul 10 09:29:58 2024

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