Atomistry » Aluminium » PDB 1vfx-2x2f » 2gj8
Atomistry »
  Aluminium »
    PDB 1vfx-2x2f »
      2gj8 »

Aluminium in PDB 2gj8: Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+

Protein crystallography data

The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+, PDB code: 2gj8 was solved by A.Scrima, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 57.540, 70.227, 91.300, 90.00, 95.51, 90.00
R / Rfree (%) 20.5 / 25.6

Other elements in 2gj8:

The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ also contains other interesting chemical elements:

Fluorine (F) 16 atoms
Magnesium (Mg) 4 atoms
Potassium (K) 4 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ (pdb code 2gj8). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+, PDB code: 2gj8:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in 2gj8

Go back to Aluminium Binding Sites List in 2gj8
Aluminium binding site 1 out of 4 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al601

b:13.0
occ:1.00
AL A:ALF601 0.0 13.0 1.0
F4 A:ALF601 1.8 13.2 1.0
F3 A:ALF601 1.8 12.5 1.0
F2 A:ALF601 1.8 12.0 1.0
F1 A:ALF601 1.8 10.5 1.0
O2B A:GDP650 2.0 9.0 1.0
O A:HOH652 2.1 11.4 1.0
PB A:GDP650 3.2 9.8 1.0
MG A:MG602 3.5 11.7 1.0
O3B A:GDP650 3.6 7.0 1.0
K A:K603 3.7 10.8 1.0
N A:GLY249 3.8 10.5 1.0
O1B A:GDP650 3.9 10.1 1.0
N A:ASN226 4.0 10.7 1.0
N A:THR250 4.0 10.7 1.0
N A:THR251 4.1 11.7 1.0
O A:HOH654 4.1 10.5 1.0
NZ A:LYS229 4.2 11.3 1.0
N A:GLY273 4.2 11.5 1.0
O A:HOH651 4.2 11.7 1.0
CA A:PRO225 4.3 10.3 1.0
O A:HOH655 4.3 11.0 1.0
CA A:GLY249 4.4 10.9 1.0
O3A A:GDP650 4.5 7.9 1.0
OG1 A:THR251 4.5 9.8 1.0
CB A:THR251 4.6 11.9 1.0
CA A:GLY273 4.6 13.6 1.0
C A:GLY249 4.6 12.3 1.0
O A:THR251 4.7 14.1 1.0
CB A:PRO225 4.7 10.8 1.0
C A:PRO225 4.7 10.3 1.0
CB A:THR250 4.7 10.9 1.0
CA A:THR250 4.8 11.7 1.0
O A:ILE247 4.9 10.8 1.0
CA A:ASN226 4.9 10.6 1.0
C A:ALA248 4.9 11.8 1.0
CA A:THR251 4.9 12.4 1.0
O2A A:GDP650 4.9 11.1 1.0
C A:THR250 4.9 11.4 1.0
OD1 A:ASN226 4.9 11.7 1.0
CE A:LYS229 5.0 11.7 1.0

Aluminium binding site 2 out of 4 in 2gj8

Go back to Aluminium Binding Sites List in 2gj8
Aluminium binding site 2 out of 4 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al611

b:15.1
occ:1.00
AL B:ALF611 0.0 15.1 1.0
F1 B:ALF611 1.7 17.0 1.0
F2 B:ALF611 1.8 14.9 1.0
F3 B:ALF611 1.8 15.2 1.0
F4 B:ALF611 1.8 16.2 1.0
O2B B:GDP651 2.0 14.7 1.0
O B:HOH653 2.1 9.9 1.0
PB B:GDP651 3.2 17.3 1.0
MG B:MG612 3.3 17.1 1.0
K B:K613 3.6 16.5 1.0
O3B B:GDP651 3.6 13.7 1.0
N B:GLY249 3.9 13.3 1.0
N B:ASN226 4.0 14.6 1.0
O1B B:GDP651 4.0 17.5 1.0
N B:THR250 4.0 14.1 1.0
O B:HOH655 4.0 11.8 1.0
N B:THR251 4.0 13.5 1.0
N B:GLY273 4.2 12.6 1.0
NZ B:LYS229 4.2 14.8 1.0
O B:HOH652 4.2 15.7 1.0
O B:HOH654 4.2 13.6 1.0
CA B:PRO225 4.3 14.1 1.0
O3A B:GDP651 4.4 16.3 1.0
CA B:GLY249 4.4 13.9 1.0
OG1 B:THR251 4.5 12.9 1.0
CB B:THR251 4.5 13.7 1.0
CA B:GLY273 4.6 12.9 1.0
CB B:THR250 4.6 14.5 1.0
C B:GLY249 4.7 14.6 1.0
O B:THR251 4.7 11.5 1.0
C B:PRO225 4.7 15.2 1.0
CA B:THR250 4.7 14.7 1.0
CB B:PRO225 4.8 14.4 1.0
CA B:THR251 4.8 13.1 1.0
O B:ILE247 4.9 17.5 1.0
C B:THR250 4.9 14.4 1.0
CA B:ASN226 4.9 16.0 1.0
C B:ALA248 4.9 14.2 1.0
O2A B:GDP651 4.9 18.3 1.0
OD1 B:ASN226 4.9 16.7 1.0
CA B:ALA248 5.0 15.6 1.0

Aluminium binding site 3 out of 4 in 2gj8

Go back to Aluminium Binding Sites List in 2gj8
Aluminium binding site 3 out of 4 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al621

b:11.4
occ:1.00
AL C:ALF621 0.0 11.4 1.0
F4 C:ALF621 1.8 12.7 1.0
F1 C:ALF621 1.8 11.7 1.0
F3 C:ALF621 1.8 10.6 1.0
F2 C:ALF621 1.8 11.0 1.0
O3B C:GDP652 1.9 15.8 1.0
O C:HOH656 2.0 10.3 1.0
PB C:GDP652 3.2 11.0 1.0
MG C:MG622 3.6 9.9 1.0
K C:K623 3.6 11.8 1.0
O1B C:GDP652 3.7 9.2 1.0
N C:GLY249 3.8 11.8 1.0
N C:ASN226 3.9 11.7 1.0
O2B C:GDP652 4.0 11.3 1.0
N C:THR250 4.1 12.9 1.0
O C:HOH654 4.1 10.6 1.0
N C:THR251 4.1 11.3 1.0
N C:GLY273 4.2 11.4 1.0
NZ C:LYS229 4.2 7.8 1.0
CA C:PRO225 4.2 13.1 1.0
O C:HOH657 4.2 13.0 1.0
O C:HOH653 4.3 11.7 1.0
O3A C:GDP652 4.4 10.4 1.0
CA C:GLY249 4.4 12.3 1.0
OG1 C:THR251 4.5 9.7 1.0
CB C:PRO225 4.6 12.5 1.0
CA C:GLY273 4.6 13.2 1.0
CB C:THR251 4.6 11.4 1.0
C C:PRO225 4.6 12.5 1.0
O C:THR251 4.7 12.0 1.0
C C:GLY249 4.7 12.4 1.0
CB C:THR250 4.7 12.0 1.0
CA C:THR250 4.8 11.9 1.0
O C:ILE247 4.8 13.5 1.0
C C:ALA248 4.8 12.7 1.0
CA C:THR251 4.9 11.1 1.0
CA C:ASN226 4.9 11.6 1.0
CA C:ALA248 4.9 13.0 1.0
OD1 C:ASN226 5.0 13.1 1.0
C C:THR250 5.0 12.2 1.0
O2A C:GDP652 5.0 11.6 1.0

Aluminium binding site 4 out of 4 in 2gj8

Go back to Aluminium Binding Sites List in 2gj8
Aluminium binding site 4 out of 4 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and K+ within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al631

b:13.6
occ:1.00
AL D:ALF631 0.0 13.6 1.0
F2 D:ALF631 1.8 13.1 1.0
F4 D:ALF631 1.8 14.0 1.0
F1 D:ALF631 1.8 13.1 1.0
F3 D:ALF631 1.8 12.4 1.0
O2B D:GDP653 1.9 12.4 1.0
O D:HOH656 2.1 11.1 1.0
PB D:GDP653 3.2 12.3 1.0
K D:K633 3.6 13.5 1.0
MG D:MG632 3.6 13.0 1.0
O3B D:GDP653 3.7 12.0 1.0
N D:GLY249 3.9 12.7 1.0
O1B D:GDP653 3.9 13.2 1.0
N D:ASN226 3.9 14.0 1.0
O D:HOH658 4.1 11.6 1.0
N D:THR250 4.1 11.4 1.0
N D:THR251 4.2 12.2 1.0
NZ D:LYS229 4.2 13.9 1.0
N D:GLY273 4.2 13.5 1.0
CA D:PRO225 4.2 14.5 1.0
O D:HOH657 4.3 14.5 1.0
O D:HOH655 4.3 13.7 1.0
O3A D:GDP653 4.4 13.1 1.0
CA D:GLY249 4.4 13.0 1.0
OG1 D:THR251 4.5 8.5 1.0
CB D:THR251 4.6 11.8 1.0
C D:PRO225 4.6 14.7 1.0
CB D:PRO225 4.6 13.3 1.0
C D:GLY249 4.7 11.8 1.0
CA D:GLY273 4.7 13.7 1.0
CB D:THR250 4.7 11.3 1.0
O D:THR251 4.7 11.7 1.0
O D:ILE247 4.7 14.5 1.0
CA D:THR250 4.8 11.6 1.0
CA D:ASN226 4.9 14.6 1.0
C D:ALA248 4.9 13.2 1.0
CA D:THR251 4.9 12.0 1.0
CA D:ALA248 4.9 13.9 1.0
OD1 D:ASN226 5.0 15.7 1.0
O2A D:GDP653 5.0 12.6 1.0

Reference:

A.Scrima, A.Wittinghofer. Dimerisation-Dependent Gtpase Reaction of Mnme: How Potassium Acts As Gtpase-Activating Element. Embo J. V. 25 2940 2006.
ISSN: ISSN 0261-4189
PubMed: 16763562
DOI: 10.1038/SJ.EMBOJ.7601171
Page generated: Wed Jul 10 09:30:42 2024

Last articles

Ca in 4AXW
Ca in 4AYO
Ca in 4AYP
Ca in 4AYG
Ca in 4AYK
Ca in 4AYL
Ca in 4AVS
Ca in 4AWZ
Ca in 4AUL
Ca in 4AXN
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy