Aluminium in PDB 2gja: Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+

The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+, PDB code: 2gja was solved by A.Scrima, A.Wittinghofer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.37 / 1.85
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	71.280, 90.650, 138.470, 90.00, 90.00, 90.00
R / Rfree (%)	19.5 / 22.8

The structure of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Aluminium atom in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ (pdb code 2gja). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+, PDB code: 2gja:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range: probe atom residue distance (Å) B Occ A:Al401 b:11.2 occ:1.00 AL A:ALF401 0.0 11.2 1.0 F1 A:ALF401 1.8 12.9 1.0 F2 A:ALF401 1.8 12.7 1.0 F4 A:ALF401 1.8 13.5 1.0 F3 A:ALF401 1.8 15.8 1.0 O2B A:GDP400 1.9 7.8 1.0 O A:HOH2 2.1 9.2 1.0 PB A:GDP400 3.2 10.4 1.0 MG A:MG402 3.5 11.5 1.0 O3B A:GDP400 3.6 8.6 1.0 N A:NH4403 3.7 11.4 1.0 N A:GLY249 3.9 11.3 1.0 O1B A:GDP400 4.0 11.4 1.0 N A:ASN226 4.0 11.6 1.0 N A:THR250 4.0 11.7 1.0 N A:THR251 4.1 11.3 1.0 N A:GLY273 4.1 11.5 1.0 NZ A:LYS229 4.1 11.7 1.0 O A:HOH101 4.1 11.4 1.0 O A:HOH100 4.2 13.2 1.0 CA A:PRO225 4.2 9.3 1.0 O A:HOH1 4.3 15.2 1.0 O3A A:GDP400 4.4 7.8 1.0 OG1 A:THR251 4.4 10.5 1.0 CA A:GLY249 4.4 12.0 1.0 CB A:THR251 4.4 11.6 1.0 CA A:GLY273 4.5 10.9 1.0 CB A:PRO225 4.6 10.1 1.0 O A:THR251 4.6 12.5 1.0 C A:PRO225 4.7 10.3 1.0 C A:GLY249 4.7 12.1 1.0 CB A:THR250 4.8 11.8 1.0 CA A:THR251 4.8 11.8 1.0 CA A:THR250 4.8 11.6 1.0 C A:ALA248 4.9 13.3 1.0 C A:THR250 5.0 12.3 1.0 CA A:ASN226 5.0 11.9 1.0 O A:ILE247 5.0 14.0 1.0 CE A:LYS229 5.0 9.6 1.0 CA A:ALA248 5.0 13.6 1.0

Aluminium binding site 2 out of 2 in the Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of the Mnme G-Domain in Complex with Gdp*ALF4-, MG2+ and NH4+ within 5.0Å range: probe atom residue distance (Å) B Occ B:Al501 b:13.4 occ:1.00 AL B:ALF501 0.0 13.4 1.0 F4 B:ALF501 1.8 16.4 1.0 F1 B:ALF501 1.8 15.4 1.0 F3 B:ALF501 1.8 14.9 1.0 F2 B:ALF501 1.8 14.8 1.0 O2B B:GDP500 1.9 6.6 1.0 O B:HOH99 2.0 9.9 1.0 PB B:GDP500 3.2 10.1 1.0 MG B:MG502 3.5 11.8 1.0 O3B B:GDP500 3.7 9.6 1.0 N B:NH4503 3.8 8.7 1.0 N B:GLY249 3.9 13.1 1.0 N B:ASN226 4.0 11.1 1.0 O1B B:GDP500 4.0 11.8 1.0 N B:THR250 4.0 11.8 1.0 NZ B:LYS229 4.0 10.7 1.0 N B:GLY273 4.1 12.4 1.0 N B:THR251 4.1 10.6 1.0 CA B:PRO225 4.2 11.4 1.0 O B:HOH113 4.2 11.4 1.0 O B:HOH114 4.3 11.3 1.0 O B:HOH4 4.3 14.3 1.0 O3A B:GDP500 4.4 10.6 1.0 CA B:GLY249 4.4 13.4 1.0 OG1 B:THR251 4.5 11.3 1.0 CA B:GLY273 4.5 12.0 1.0 CB B:THR251 4.5 10.6 1.0 CB B:PRO225 4.6 12.2 1.0 O B:THR251 4.6 11.9 1.0 C B:PRO225 4.6 12.1 1.0 C B:GLY249 4.7 13.0 1.0 CB B:THR250 4.8 11.9 1.0 CA B:THR250 4.8 12.2 1.0 C B:ALA248 4.9 15.2 1.0 CE B:LYS229 4.9 12.0 1.0 CA B:THR251 4.9 11.4 1.0 CA B:ASN226 4.9 12.4 1.0 O B:ILE247 4.9 15.9 1.0 CA B:ALA248 4.9 15.0 1.0 C B:THR250 5.0 11.9 1.0

A.Scrima, A.Wittinghofer. Dimerisation-Dependent Gtpase Reaction of Mnme: How Potassium Acts As Gtpase-Activating Element. Embo J. V. 25 2940 2006.
ISSN: ISSN 0261-4189
PubMed: 16763562
DOI: 10.1038/SJ.EMBOJ.7601171