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Aluminium in PDB 2woj: Adp-ALF4 Complex of S. Cerevisiae GET3

Enzymatic activity of Adp-ALF4 Complex of S. Cerevisiae GET3

All present enzymatic activity of Adp-ALF4 Complex of S. Cerevisiae GET3:
3.6.3.16;

Protein crystallography data

The structure of Adp-ALF4 Complex of S. Cerevisiae GET3, PDB code: 2woj was solved by A.Mateja, A.Szlachcic, M.E.Downing, M.Dobosz, M.Mariappan, R.S.Hegde, R.J.Keenan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.441 / 1.99
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 53.612, 82.628, 167.282, 90.00, 98.28, 90.00
R / Rfree (%) 17.59 / 21.27

Other elements in 2woj:

The structure of Adp-ALF4 Complex of S. Cerevisiae GET3 also contains other interesting chemical elements:

Fluorine (F) 16 atoms
Magnesium (Mg) 4 atoms
Zinc (Zn) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Adp-ALF4 Complex of S. Cerevisiae GET3 (pdb code 2woj). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Adp-ALF4 Complex of S. Cerevisiae GET3, PDB code: 2woj:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in 2woj

Go back to Aluminium Binding Sites List in 2woj
Aluminium binding site 1 out of 4 in the Adp-ALF4 Complex of S. Cerevisiae GET3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Adp-ALF4 Complex of S. Cerevisiae GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al402

b:29.1
occ:1.00
AL A:ALF402 0.0 29.1 1.0
F1 A:ALF402 1.7 33.6 1.0
F4 A:ALF402 1.8 34.4 1.0
F3 A:ALF402 1.8 25.0 1.0
F2 A:ALF402 1.8 32.4 1.0
O1B A:ADP401 1.9 23.4 1.0
O A:HOH2023 2.0 23.6 1.0
PB A:ADP401 3.2 21.0 1.0
MG A:MG403 3.3 28.8 1.0
O2B A:ADP401 3.5 22.3 1.0
NZ B:LYS26 3.5 22.4 1.0
O A:HOH2133 3.7 24.3 1.0
O A:HOH2029 3.7 12.9 1.0
OD2 A:ASP57 3.9 28.8 1.0
NZ A:LYS31 3.9 21.8 1.0
N A:GLY28 3.9 20.6 1.0
O3B A:ADP401 4.0 22.7 1.0
O A:HOH2025 4.1 22.3 1.0
O B:HOH2101 4.2 25.6 1.0
CE B:LYS26 4.3 23.7 1.0
N B:GLY27 4.3 21.6 1.0
O A:HOH2066 4.3 29.5 1.0
O3A A:ADP401 4.3 21.3 1.0
CA B:GLY27 4.4 21.4 1.0
CG A:PRO169 4.5 29.9 1.0
CE A:LYS31 4.5 23.1 1.0
CG B:LYS26 4.5 25.6 1.0
CA A:GLY27 4.6 20.5 1.0
ND2 A:ASN61 4.7 27.9 1.0
CA A:GLY28 4.7 21.0 1.0
CD A:PRO169 4.8 27.8 1.0
C A:GLY27 4.8 20.7 1.0
O2A A:ADP401 4.8 24.8 1.0

Aluminium binding site 2 out of 4 in 2woj

Go back to Aluminium Binding Sites List in 2woj
Aluminium binding site 2 out of 4 in the Adp-ALF4 Complex of S. Cerevisiae GET3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Adp-ALF4 Complex of S. Cerevisiae GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al402

b:27.9
occ:1.00
AL B:ALF402 0.0 27.9 1.0
F1 B:ALF402 1.7 31.7 1.0
F2 B:ALF402 1.8 29.0 1.0
F4 B:ALF402 1.8 35.2 1.0
F3 B:ALF402 1.8 25.1 1.0
O1B B:ADP401 1.9 20.8 1.0
O B:HOH2032 2.0 25.5 1.0
PB B:ADP401 3.2 22.3 1.0
MG B:MG403 3.3 27.4 1.0
O2B B:ADP401 3.4 21.6 1.0
NZ A:LYS26 3.5 22.5 1.0
O A:HOH2090 3.7 14.7 1.0
O B:HOH2154 3.7 25.2 1.0
OD2 B:ASP57 3.9 29.2 1.0
O3B B:ADP401 3.9 25.4 1.0
N B:GLY28 4.0 23.9 1.0
NZ B:LYS31 4.0 24.2 1.0
O B:HOH2031 4.2 24.0 1.0
O A:HOH2091 4.3 25.8 1.0
CE A:LYS26 4.3 24.9 1.0
O3A B:ADP401 4.3 21.6 1.0
O B:HOH2078 4.3 27.2 1.0
N A:GLY27 4.4 25.9 1.0
CG A:LYS26 4.5 23.6 1.0
CA A:GLY27 4.5 20.5 1.0
CG B:PRO169 4.6 27.3 1.0
CE B:LYS31 4.6 22.1 1.0
CA B:GLY28 4.6 26.4 1.0
CA B:GLY27 4.7 21.4 1.0
ND2 B:ASN61 4.8 35.5 1.0
O2A B:ADP401 4.8 24.7 1.0
C B:GLY27 4.9 25.0 1.0
CD B:PRO169 4.9 28.5 1.0
O A:GLY27 5.0 21.1 1.0

Aluminium binding site 3 out of 4 in 2woj

Go back to Aluminium Binding Sites List in 2woj
Aluminium binding site 3 out of 4 in the Adp-ALF4 Complex of S. Cerevisiae GET3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Adp-ALF4 Complex of S. Cerevisiae GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al402

b:29.6
occ:1.00
AL C:ALF402 0.0 29.6 1.0
F1 C:ALF402 1.7 33.6 1.0
F4 C:ALF402 1.8 41.7 1.0
F3 C:ALF402 1.8 29.7 1.0
F2 C:ALF402 1.8 28.7 1.0
O1B C:ADP401 1.9 25.9 1.0
O C:HOH2027 2.0 30.6 1.0
PB C:ADP401 3.2 25.4 1.0
MG C:MG403 3.3 30.4 1.0
O2B C:ADP401 3.4 28.5 1.0
NZ D:LYS26 3.7 29.4 1.0
O C:HOH2033 3.7 25.2 1.0
O C:HOH2034 3.7 15.2 1.0
OD2 C:ASP57 3.9 29.1 1.0
O3B C:ADP401 3.9 29.3 1.0
N C:GLY28 4.0 25.6 1.0
NZ C:LYS31 4.0 31.8 1.0
O C:HOH2026 4.1 28.4 1.0
O D:HOH2065 4.2 30.4 1.0
CE D:LYS26 4.3 29.7 1.0
O C:HOH2066 4.3 29.9 1.0
N D:GLY27 4.4 28.4 1.0
O3A C:ADP401 4.4 24.3 1.0
CA D:GLY27 4.4 30.5 1.0
CG C:PRO169 4.4 30.4 1.0
CG D:LYS26 4.5 31.9 1.0
CE C:LYS31 4.6 30.1 1.0
ND2 C:ASN61 4.6 31.9 1.0
CA C:GLY28 4.7 25.1 1.0
CA C:GLY27 4.7 31.0 1.0
CD C:PRO169 4.8 33.8 1.0
O2A C:ADP401 4.8 28.3 1.0
C C:GLY27 4.9 29.3 1.0

Aluminium binding site 4 out of 4 in 2woj

Go back to Aluminium Binding Sites List in 2woj
Aluminium binding site 4 out of 4 in the Adp-ALF4 Complex of S. Cerevisiae GET3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Adp-ALF4 Complex of S. Cerevisiae GET3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al402

b:32.2
occ:1.00
AL D:ALF402 0.0 32.2 1.0
F1 D:ALF402 1.8 37.2 1.0
F4 D:ALF402 1.8 41.1 1.0
F3 D:ALF402 1.8 28.7 1.0
F2 D:ALF402 1.8 30.7 1.0
O1B D:ADP401 1.9 28.8 1.0
O D:HOH2023 2.0 29.6 1.0
PB D:ADP401 3.3 29.2 1.0
MG D:MG403 3.3 35.3 1.0
O D:HOH2029 3.6 16.4 1.0
O2B D:ADP401 3.6 29.5 1.0
NZ C:LYS26 3.6 31.9 1.0
O D:HOH2028 3.7 29.9 1.0
OD2 D:ASP57 3.9 32.4 1.0
N D:GLY28 4.0 28.5 1.0
O3B D:ADP401 4.0 37.7 1.0
O D:HOH2022 4.1 29.7 1.0
O C:HOH2080 4.2 30.0 1.0
NZ D:LYS31 4.2 28.6 1.0
N C:GLY27 4.3 27.2 1.0
O D:HOH2055 4.3 34.9 1.0
CE C:LYS26 4.4 36.1 1.0
O3A D:ADP401 4.4 29.7 1.0
CG C:LYS26 4.4 31.6 1.0
CG D:PRO169 4.4 28.6 1.0
CA C:GLY27 4.4 31.0 1.0
ND2 D:ASN61 4.5 36.2 1.0
CA D:GLY28 4.6 28.9 1.0
CE D:LYS31 4.7 35.8 1.0
O2A D:ADP401 4.8 30.2 1.0
CA D:GLY27 4.8 30.5 1.0
CD D:PRO169 4.8 29.4 1.0
C D:GLY27 4.9 33.4 1.0

Reference:

A.Mateja, A.Szlachcic, M.E.Downing, M.Dobosz, M.Mariappan, R.S.Hegde, R.J.Keenan. The Structural Basis of Tail-Anchored Membrane Protein Recognition By GET3. Nature V. 461 361 2009.
ISSN: ISSN 0028-0836
PubMed: 19675567
DOI: 10.1038/NATURE08319
Page generated: Sat Dec 12 01:31:52 2020

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