Atomistry » Aluminium » PDB 1vfx-2x2f » 2x2f
Atomistry »
  Aluminium »
    PDB 1vfx-2x2f »
      2x2f »

Aluminium in PDB 2x2f: Dynamin 1 Gtpase Dimer, Short Axis Form

Enzymatic activity of Dynamin 1 Gtpase Dimer, Short Axis Form

All present enzymatic activity of Dynamin 1 Gtpase Dimer, Short Axis Form:
3.6.5.5;

Protein crystallography data

The structure of Dynamin 1 Gtpase Dimer, Short Axis Form, PDB code: 2x2f was solved by J.S.Chappie, S.Acharya, M.Leonard, S.L.Schmid, F.Dyda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.444, 81.274, 175.697, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 25.4

Other elements in 2x2f:

The structure of Dynamin 1 Gtpase Dimer, Short Axis Form also contains other interesting chemical elements:

Fluorine (F) 8 atoms
Magnesium (Mg) 2 atoms
Sodium (Na) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Dynamin 1 Gtpase Dimer, Short Axis Form (pdb code 2x2f). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Dynamin 1 Gtpase Dimer, Short Axis Form, PDB code: 2x2f:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 2x2f

Go back to Aluminium Binding Sites List in 2x2f
Aluminium binding site 1 out of 2 in the Dynamin 1 Gtpase Dimer, Short Axis Form


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1748

b:14.3
occ:1.00
AL A:ALF1748 0.0 14.3 1.0
F3 A:ALF1748 1.8 15.9 1.0
F4 A:ALF1748 1.8 16.1 1.0
F1 A:ALF1748 1.8 15.2 1.0
F2 A:ALF1748 1.8 15.3 1.0
O3B A:GDP1747 2.0 7.1 1.0
O A:HOH2027 2.2 13.8 1.0
PB A:GDP1747 3.2 7.8 1.0
NA A:NA1750 3.4 14.6 1.0
MG A:MG1749 3.5 7.9 1.0
O2B A:GDP1747 3.7 6.3 1.0
O1B A:GDP1747 3.7 9.7 1.0
N A:SER41 3.8 7.4 1.0
O A:HOH2171 3.9 7.7 1.0
NZ A:LYS44 4.0 2.1 1.0
N A:THR65 4.1 10.2 1.0
O A:HOH2066 4.1 7.4 1.0
N A:GLY139 4.1 9.7 1.0
O A:HOH2063 4.2 7.6 1.0
N A:VAL64 4.3 11.8 1.0
CB A:THR65 4.3 4.4 1.0
OG1 A:THR65 4.4 6.9 1.0
CA A:SER41 4.4 7.3 1.0
O A:THR65 4.5 9.6 1.0
O3A A:GDP1747 4.5 9.1 1.0
CG A:GLN40 4.6 6.4 1.0
O A:GLY62 4.6 16.2 1.0
CA A:GLN40 4.7 8.6 1.0
CA A:THR65 4.7 6.2 1.0
CA A:GLY139 4.7 10.2 1.0
C A:GLN40 4.8 8.2 1.0
CE A:LYS44 4.8 2.0 1.0
OG A:SER41 4.8 8.7 1.0
O2A A:GDP1747 4.9 6.8 1.0
CA A:VAL64 5.0 10.5 1.0
CB A:VAL64 5.0 10.1 1.0
CA A:PRO138 5.0 10.5 1.0

Aluminium binding site 2 out of 2 in 2x2f

Go back to Aluminium Binding Sites List in 2x2f
Aluminium binding site 2 out of 2 in the Dynamin 1 Gtpase Dimer, Short Axis Form


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Dynamin 1 Gtpase Dimer, Short Axis Form within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al1747

b:10.9
occ:1.00
AL D:ALF1747 0.0 10.9 1.0
F1 D:ALF1747 1.8 11.9 1.0
F4 D:ALF1747 1.8 13.6 1.0
F3 D:ALF1747 1.8 14.3 1.0
F2 D:ALF1747 1.8 12.6 1.0
O3B D:GDP1746 2.0 8.0 1.0
O D:HOH2020 2.1 8.2 1.0
PB D:GDP1746 3.2 7.9 1.0
NA D:NA1749 3.3 17.5 1.0
MG D:MG1748 3.6 8.2 1.0
O2B D:GDP1746 3.7 5.6 1.0
O1B D:GDP1746 3.7 8.5 1.0
N D:SER41 3.9 6.9 1.0
O D:HOH2150 3.9 9.8 1.0
O D:HOH2052 3.9 12.4 1.0
NZ D:LYS44 4.0 6.5 1.0
N D:THR65 4.1 7.3 1.0
N D:GLY139 4.1 10.8 1.0
OG1 D:THR65 4.2 10.7 1.0
N D:VAL64 4.2 8.2 1.0
O D:HOH2050 4.2 7.5 1.0
CB D:THR65 4.3 3.3 1.0
O D:THR65 4.5 10.8 1.0
CA D:SER41 4.5 6.7 1.0
O3A D:GDP1746 4.5 7.3 1.0
CG D:GLN40 4.5 3.1 1.0
O D:GLY62 4.6 10.6 1.0
OG D:SER41 4.7 10.6 1.0
CA D:GLN40 4.7 9.0 1.0
CA D:THR65 4.7 7.2 1.0
O2A D:GDP1746 4.8 9.6 1.0
C D:GLN40 4.8 9.6 1.0
CA D:PRO138 4.8 8.6 1.0
CA D:GLY139 4.8 10.3 1.0
CE D:LYS44 4.8 8.2 1.0
C D:PRO138 4.9 10.2 1.0
CA D:VAL64 4.9 6.2 1.0
CA D:ILE63 4.9 9.8 1.0
CB D:VAL64 5.0 5.4 1.0
C D:VAL64 5.0 7.2 1.0

Reference:

J.S.Chappie, S.Acharya, M.Leonard, S.L.Schmid, F.Dyda. G Domain Dimerization Controls Dynamin'S Assembly-Stimulated Gtpase Activity. Nature V. 465 435 2010.
ISSN: ISSN 0028-0836
PubMed: 20428113
DOI: 10.1038/NATURE09032
Page generated: Sat Dec 12 01:31:55 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy