Atomistry » Aluminium » PDB 2xzl-3wgu » 2ynm
Atomistry »
  Aluminium »
    PDB 2xzl-3wgu »
      2ynm »

Aluminium in PDB 2ynm: Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

Enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

All present enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A:
1.3.7.7;

Protein crystallography data

The structure of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm was solved by J.Krausze, C.Lange, D.W.Heinz, J.Moser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.510 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 308.400, 74.110, 74.230, 90.00, 91.24, 90.00
R / Rfree (%) 19.89 / 23.31

Other elements in 2ynm:

The structure of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 3 atoms
Potassium (K) 1 atom
Iron (Fe) 8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A (pdb code 2ynm). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 2ynm

Go back to Aluminium Binding Sites List in 2ynm
Aluminium binding site 1 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1299

b:32.0
occ:1.00
AL A:AF31299 0.0 32.0 1.0
F1 A:AF31299 1.8 27.1 1.0
F2 A:AF31299 1.8 17.8 1.0
F3 A:AF31299 1.8 39.0 1.0
O A:HOH2019 2.4 32.5 1.0
O2B A:ADP1300 2.4 31.3 1.0
O A:HOH2006 2.6 35.1 1.0
PB A:ADP1300 3.4 25.7 1.0
MG A:MG1301 3.5 26.1 1.0
NZ A:LYS68 3.6 24.4 1.0
O3B A:ADP1300 3.7 20.7 1.0
O A:HOH2010 3.9 29.7 1.0
OD2 A:ASP66 3.9 27.0 1.0
NZ B:LYS37 3.9 25.3 1.0
O1B A:ADP1300 4.0 21.5 1.0
N A:GLY39 4.1 24.8 1.0
NZ A:LYS42 4.1 17.2 1.0
O B:HOH2003 4.2 25.3 1.0
N A:GLY154 4.3 32.3 1.0
O A:HOH2008 4.3 18.6 1.0
CE A:LYS68 4.3 23.8 1.0
CE A:LYS42 4.3 16.8 1.0
O A:HOH2009 4.4 26.5 1.0
OD1 B:ASP155 4.4 28.4 1.0
CA A:LEU153 4.5 28.2 1.0
CE B:LYS37 4.6 17.7 1.0
OD2 B:ASP155 4.7 24.8 1.0
O3A A:ADP1300 4.7 33.7 1.0
CA A:GLY38 4.8 22.0 1.0
C A:LEU153 4.8 31.1 1.0
CA A:GLY39 4.8 25.2 1.0
CB A:LEU153 4.8 27.8 1.0
O A:HOH2047 4.9 24.6 1.0
O2A A:ADP1300 4.9 32.8 1.0
C A:GLY38 5.0 21.8 1.0
CG B:ASP155 5.0 28.1 1.0

Aluminium binding site 2 out of 2 in 2ynm

Go back to Aluminium Binding Sites List in 2ynm
Aluminium binding site 2 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1298

b:44.1
occ:1.00
AL B:AF31298 0.0 44.1 1.0
F2 B:AF31298 1.8 29.1 1.0
F3 B:AF31298 1.8 27.4 1.0
F1 B:AF31298 1.8 25.0 1.0
O1B B:ADP1299 2.4 29.9 1.0
O A:HOH2046 2.4 32.9 1.0
PB B:ADP1299 3.3 27.0 1.0
MG B:MG1297 3.6 34.2 1.0
O2B B:ADP1299 3.8 25.9 1.0
O3B B:ADP1299 3.8 26.4 1.0
N B:GLY154 3.9 30.0 1.0
NZ B:LYS42 4.0 20.3 1.0
N B:GLY39 4.0 24.7 1.0
O A:HOH2003 4.0 30.1 1.0
OD2 B:ASP66 4.0 22.1 1.0
NZ A:LYS37 4.0 27.2 1.0
O A:HOH2005 4.1 29.0 1.0
NZ B:LYS68 4.1 24.2 1.0
CE B:LYS42 4.2 19.0 1.0
O B:HOH2005 4.3 37.3 1.0
CA B:LEU153 4.4 29.9 1.0
OD1 A:ASP155 4.4 33.3 1.0
O B:HOH2004 4.4 19.0 1.0
C B:LEU153 4.5 27.8 1.0
CA B:GLY154 4.6 29.1 1.0
CE A:LYS37 4.6 26.0 1.0
CA B:GLY39 4.7 26.5 1.0
O3A B:ADP1299 4.7 20.9 1.0
CA B:GLY38 4.7 21.7 1.0
OD2 A:ASP155 4.7 31.7 1.0
CB B:LEU153 4.8 30.6 1.0
CE B:LYS68 4.8 22.8 1.0
O A:HOH2047 4.9 24.6 1.0
C B:GLY38 4.9 23.2 1.0

Reference:

J.Moser, C.Lange, J.Krausze, J.Rebelein, W.Schubert, M.W.Ribbe, D.W.Heinz, D.Jahn. Structure of Adp-Aluminium Fluoride-Stabilized Protochlorophyllide Oxidoreductase Complex. Proc.Natl.Acad.Sci.Usa V. 110 2094 2013.
ISSN: ISSN 0027-8424
PubMed: 23341615
DOI: 10.1073/PNAS.1218303110
Page generated: Sat Dec 12 01:32:03 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy