Aluminium in PDB 2ynm: Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

Enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

All present enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A:
1.3.7.7;

Protein crystallography data

The structure of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm was solved by J.Krausze, C.Lange, D.W.Heinz, J.Moser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.510 / 2.10
*Space group*	C 1 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	308.400, 74.110, 74.230, 90.00, 91.24, 90.00
*R / R_free (%)*	19.89 / 23.31

Other elements in 2ynm:

Fluorine	(F)	6 atoms
Magnesium	(Mg)	3 atoms
Potassium	(K)	1 atom
Iron	(Fe)	8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A (pdb code 2ynm). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 2ynm

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Aluminium Binding Sites List in 2ynm

Aluminium binding site 1 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

Mono view

Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Al1299 b:32.0 occ:1.00	AL	A:AF31299	0.0	32.0	1.0
	F1	A:AF31299	1.8	27.1	1.0
	F2	A:AF31299	1.8	17.8	1.0
	F3	A:AF31299	1.8	39.0	1.0
	O	A:HOH2019	2.4	32.5	1.0
	O2B	A:ADP1300	2.4	31.3	1.0
	O	A:HOH2006	2.6	35.1	1.0
	PB	A:ADP1300	3.4	25.7	1.0
	MG	A:MG1301	3.5	26.1	1.0
	NZ	A:LYS68	3.6	24.4	1.0
	O3B	A:ADP1300	3.7	20.7	1.0
	O	A:HOH2010	3.9	29.7	1.0
	OD2	A:ASP66	3.9	27.0	1.0
	NZ	B:LYS37	3.9	25.3	1.0
	O1B	A:ADP1300	4.0	21.5	1.0
	N	A:GLY39	4.1	24.8	1.0
	NZ	A:LYS42	4.1	17.2	1.0
	O	B:HOH2003	4.2	25.3	1.0
	N	A:GLY154	4.3	32.3	1.0
	O	A:HOH2008	4.3	18.6	1.0
	CE	A:LYS68	4.3	23.8	1.0
	CE	A:LYS42	4.3	16.8	1.0
	O	A:HOH2009	4.4	26.5	1.0
	OD1	B:ASP155	4.4	28.4	1.0
	CA	A:LEU153	4.5	28.2	1.0
	CE	B:LYS37	4.6	17.7	1.0
	OD2	B:ASP155	4.7	24.8	1.0
	O3A	A:ADP1300	4.7	33.7	1.0
	CA	A:GLY38	4.8	22.0	1.0
	C	A:LEU153	4.8	31.1	1.0
	CA	A:GLY39	4.8	25.2	1.0
	CB	A:LEU153	4.8	27.8	1.0
	O	A:HOH2047	4.9	24.6	1.0
	O2A	A:ADP1300	4.9	32.8	1.0
	C	A:GLY38	5.0	21.8	1.0
	CG	B:ASP155	5.0	28.1	1.0

Aluminium binding site 2 out of 2 in 2ynm

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Aluminium Binding Sites List in 2ynm

Aluminium binding site 2 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

Mono view

Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Al1298 b:44.1 occ:1.00	AL	B:AF31298	0.0	44.1	1.0
	F2	B:AF31298	1.8	29.1	1.0
	F3	B:AF31298	1.8	27.4	1.0
	F1	B:AF31298	1.8	25.0	1.0
	O1B	B:ADP1299	2.4	29.9	1.0
	O	A:HOH2046	2.4	32.9	1.0
	PB	B:ADP1299	3.3	27.0	1.0
	MG	B:MG1297	3.6	34.2	1.0
	O2B	B:ADP1299	3.8	25.9	1.0
	O3B	B:ADP1299	3.8	26.4	1.0
	N	B:GLY154	3.9	30.0	1.0
	NZ	B:LYS42	4.0	20.3	1.0
	N	B:GLY39	4.0	24.7	1.0
	O	A:HOH2003	4.0	30.1	1.0
	OD2	B:ASP66	4.0	22.1	1.0
	NZ	A:LYS37	4.0	27.2	1.0
	O	A:HOH2005	4.1	29.0	1.0
	NZ	B:LYS68	4.1	24.2	1.0
	CE	B:LYS42	4.2	19.0	1.0
	O	B:HOH2005	4.3	37.3	1.0
	CA	B:LEU153	4.4	29.9	1.0
	OD1	A:ASP155	4.4	33.3	1.0
	O	B:HOH2004	4.4	19.0	1.0
	C	B:LEU153	4.5	27.8	1.0
	CA	B:GLY154	4.6	29.1	1.0
	CE	A:LYS37	4.6	26.0	1.0
	CA	B:GLY39	4.7	26.5	1.0
	O3A	B:ADP1299	4.7	20.9	1.0
	CA	B:GLY38	4.7	21.7	1.0
	OD2	A:ASP155	4.7	31.7	1.0
	CB	B:LEU153	4.8	30.6	1.0
	CE	B:LYS68	4.8	22.8	1.0
	O	A:HOH2047	4.9	24.6	1.0
	C	B:GLY38	4.9	23.2	1.0

Reference:

J.Moser, C.Lange, J.Krausze, J.Rebelein, W.Schubert, M.W.Ribbe, D.W.Heinz, D.Jahn. Structure of Adp-Aluminium Fluoride-Stabilized Protochlorophyllide Oxidoreductase Complex. Proc.Natl.Acad.Sci.Usa V. 110 2094 2013.
ISSN: ISSN 0027-8424
PubMed: 23341615
DOI: 10.1073/PNAS.1218303110

Page generated: Wed Jul 10 09:34:21 2024

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