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Aluminium in PDB 2ynm: Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

Enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A

All present enzymatic activity of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A:
1.3.7.7;

Protein crystallography data

The structure of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm was solved by J.Krausze, C.Lange, D.W.Heinz, J.Moser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.510 / 2.10
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 308.400, 74.110, 74.230, 90.00, 91.24, 90.00
R / Rfree (%) 19.89 / 23.31

Other elements in 2ynm:

The structure of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 3 atoms
Potassium (K) 1 atom
Iron (Fe) 8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A (pdb code 2ynm). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A, PDB code: 2ynm:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 2ynm

Go back to Aluminium Binding Sites List in 2ynm
Aluminium binding site 1 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1299

b:32.0
occ:1.00
AL A:AF31299 0.0 32.0 1.0
F1 A:AF31299 1.8 27.1 1.0
F2 A:AF31299 1.8 17.8 1.0
F3 A:AF31299 1.8 39.0 1.0
O A:HOH2019 2.4 32.5 1.0
O2B A:ADP1300 2.4 31.3 1.0
O A:HOH2006 2.6 35.1 1.0
PB A:ADP1300 3.4 25.7 1.0
MG A:MG1301 3.5 26.1 1.0
NZ A:LYS68 3.6 24.4 1.0
O3B A:ADP1300 3.7 20.7 1.0
O A:HOH2010 3.9 29.7 1.0
OD2 A:ASP66 3.9 27.0 1.0
NZ B:LYS37 3.9 25.3 1.0
O1B A:ADP1300 4.0 21.5 1.0
N A:GLY39 4.1 24.8 1.0
NZ A:LYS42 4.1 17.2 1.0
O B:HOH2003 4.2 25.3 1.0
N A:GLY154 4.3 32.3 1.0
O A:HOH2008 4.3 18.6 1.0
CE A:LYS68 4.3 23.8 1.0
CE A:LYS42 4.3 16.8 1.0
O A:HOH2009 4.4 26.5 1.0
OD1 B:ASP155 4.4 28.4 1.0
CA A:LEU153 4.5 28.2 1.0
CE B:LYS37 4.6 17.7 1.0
OD2 B:ASP155 4.7 24.8 1.0
O3A A:ADP1300 4.7 33.7 1.0
CA A:GLY38 4.8 22.0 1.0
C A:LEU153 4.8 31.1 1.0
CA A:GLY39 4.8 25.2 1.0
CB A:LEU153 4.8 27.8 1.0
O A:HOH2047 4.9 24.6 1.0
O2A A:ADP1300 4.9 32.8 1.0
C A:GLY38 5.0 21.8 1.0
CG B:ASP155 5.0 28.1 1.0

Aluminium binding site 2 out of 2 in 2ynm

Go back to Aluminium Binding Sites List in 2ynm
Aluminium binding site 2 out of 2 in the Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of the ADPXALF3-Stabilized Transition State of the Nitrogenase-Like Dark-Operative Protochlorophyllide Oxidoreductase Complex From Prochlorococcus Marinus with Its Substrate Protochlorophyllide A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1298

b:44.1
occ:1.00
AL B:AF31298 0.0 44.1 1.0
F2 B:AF31298 1.8 29.1 1.0
F3 B:AF31298 1.8 27.4 1.0
F1 B:AF31298 1.8 25.0 1.0
O1B B:ADP1299 2.4 29.9 1.0
O A:HOH2046 2.4 32.9 1.0
PB B:ADP1299 3.3 27.0 1.0
MG B:MG1297 3.6 34.2 1.0
O2B B:ADP1299 3.8 25.9 1.0
O3B B:ADP1299 3.8 26.4 1.0
N B:GLY154 3.9 30.0 1.0
NZ B:LYS42 4.0 20.3 1.0
N B:GLY39 4.0 24.7 1.0
O A:HOH2003 4.0 30.1 1.0
OD2 B:ASP66 4.0 22.1 1.0
NZ A:LYS37 4.0 27.2 1.0
O A:HOH2005 4.1 29.0 1.0
NZ B:LYS68 4.1 24.2 1.0
CE B:LYS42 4.2 19.0 1.0
O B:HOH2005 4.3 37.3 1.0
CA B:LEU153 4.4 29.9 1.0
OD1 A:ASP155 4.4 33.3 1.0
O B:HOH2004 4.4 19.0 1.0
C B:LEU153 4.5 27.8 1.0
CA B:GLY154 4.6 29.1 1.0
CE A:LYS37 4.6 26.0 1.0
CA B:GLY39 4.7 26.5 1.0
O3A B:ADP1299 4.7 20.9 1.0
CA B:GLY38 4.7 21.7 1.0
OD2 A:ASP155 4.7 31.7 1.0
CB B:LEU153 4.8 30.6 1.0
CE B:LYS68 4.8 22.8 1.0
O A:HOH2047 4.9 24.6 1.0
C B:GLY38 4.9 23.2 1.0

Reference:

J.Moser, C.Lange, J.Krausze, J.Rebelein, W.Schubert, M.W.Ribbe, D.W.Heinz, D.Jahn. Structure of Adp-Aluminium Fluoride-Stabilized Protochlorophyllide Oxidoreductase Complex. Proc.Natl.Acad.Sci.Usa V. 110 2094 2013.
ISSN: ISSN 0027-8424
PubMed: 23341615
DOI: 10.1073/PNAS.1218303110
Page generated: Wed Jul 10 09:34:21 2024

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