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Aluminium in PDB 2zbd: Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium

Enzymatic activity of Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium

All present enzymatic activity of Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium:
3.6.3.8;

Protein crystallography data

The structure of Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium, PDB code: 2zbd was solved by C.Toyoshima, H.Nomura, T.Tsuda, H.Ogawa, Y.Norimatsu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 2.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 162.900, 75.100, 152.100, 90.00, 109.30, 90.00
R / Rfree (%) 24.6 / 27.1

Other elements in 2zbd:

The structure of Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Magnesium (Mg) 2 atoms
Calcium (Ca) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium (pdb code 2zbd). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium, PDB code: 2zbd:

Aluminium binding site 1 out of 1 in 2zbd

Go back to Aluminium Binding Sites List in 2zbd
Aluminium binding site 1 out of 1 in the Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of the Sr Calcium Pump with Bound Aluminium Fluoride, Adp and Calcium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al998

b:57.0
occ:1.00
 AL A:ALF998 0.0 57.0 1.0
F3 A:ALF998 1.8 56.2 1.0
F2 A:ALF998 1.8 55.3 1.0
F4 A:ALF998 1.8 55.3 1.0
F1 A:ALF998 1.8 57.1 1.0
OD1 A:ASP351 1.9 58.7 1.0
O3B A:ADP1002 2.0 48.9 1.0
CG A:ASP351 3.0 59.9 1.0
PB A:ADP1002 3.4 52.4 1.0
MG A:MG1001 3.4 49.4 1.0
OD2 A:ASP351 3.5 59.4 1.0
O A:HOH1038 3.6 65.2 1.0
OG1 A:THR625 3.6 58.7 1.0
NZ A:LYS684 3.7 60.0 1.0
OG1 A:THR353 3.8 61.2 1.0
O3A A:ADP1002 3.8 53.1 1.0
N A:THR353 3.9 61.1 1.0
MG A:MG997 3.9 0.5 1.0
ND2 A:ASN706 4.1 57.0 1.0
N A:LYS352 4.1 60.5 1.0
O1B A:ADP1002 4.2 50.0 1.0
CB A:THR353 4.2 61.4 1.0
CB A:ASP351 4.2 60.8 1.0
N A:GLY626 4.3 57.9 1.0
CA A:THR625 4.3 58.8 1.0
CB A:THR625 4.4 59.1 1.0
O2B A:ADP1002 4.5 51.5 1.0
O A:HOH1041 4.5 55.8 1.0
CA A:THR353 4.6 61.7 1.0
O A:THR353 4.6 62.5 1.0
O A:ILE624 4.7 60.2 1.0
CA A:ASP351 4.7 61.4 1.0
C A:LYS352 4.8 60.8 1.0
CA A:LYS352 4.8 60.7 1.0
O1A A:ADP1002 4.8 52.8 1.0
C A:ASP351 4.8 60.8 1.0
C A:THR625 4.9 58.3 1.0
PA A:ADP1002 4.9 53.3 1.0
CE A:LYS684 4.9 61.2 1.0

Reference:

C.Toyoshima, H.Nomura, T.Tsuda. Lumenal Gating Mechanism Revealed in Calcium Pump Crystal Structures with Phosphate Analogues Nature V. 432 361 2004.
ISSN: ISSN 0028-0836
PubMed: 15448704
DOI: 10.1038/NATURE02981
Page generated: Sat Dec 12 01:32:02 2020

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