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Aluminium in PDB 3cmu: Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures

Protein crystallography data

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmu was solved by N.P.Pavletich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 4.20
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 156.000, 156.000, 211.000, 90.00, 90.00, 120.00
R / Rfree (%) 27.5 / 29.8

Other elements in 3cmu:

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures also contains other interesting chemical elements:

Fluorine (F) 24 atoms
Magnesium (Mg) 6 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures (pdb code 3cmu). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 6 binding sites of Aluminium where determined in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmu:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6;

Aluminium binding site 1 out of 6 in 3cmu

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Aluminium binding site 1 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al501

b:0.3
occ:1.00
AL A:ALF501 0.0 0.3 1.0
F3 A:ALF501 1.8 1.0 1.0
F4 A:ALF501 1.8 0.8 1.0
F2 A:ALF501 1.8 0.1 1.0
F1 A:ALF501 1.8 0.1 1.0
O3B A:ADP502 1.9 0.5 1.0
PB A:ADP502 2.9 0.8 1.0
O1B A:ADP502 2.9 0.3 1.0
NZ A:LYS1250 3.0 0.5 1.0
OE2 A:GLU96 3.1 0.8 1.0
NZ A:LYS1248 3.3 0.6 1.0
CE A:LYS1250 3.4 0.5 1.0
MG A:MG500 3.4 0.4 1.0
OE1 A:GLU96 3.5 0.8 1.0
CD A:GLU96 3.6 0.9 1.0
O A:PHE1217 3.8 0.2 1.0
O3A A:ADP502 3.9 0.3 1.0
NZ A:LYS72 3.9 0.0 1.0
O2B A:ADP502 4.1 0.1 1.0
CE A:LYS1248 4.2 0.5 1.0
CE A:LYS72 4.3 0.7 1.0
N A:SER69 4.5 0.8 1.0
C A:PHE1217 4.6 0.4 1.0
CD A:LYS1250 4.6 0.2 1.0
O2A A:ADP502 4.6 0.4 1.0
CD2 A:PHE1217 4.7 0.6 1.0
CA A:PHE1217 4.7 0.8 1.0
CA A:GLU68 4.7 0.3 1.0
CB A:PHE1217 4.8 0.9 1.0
OG1 A:THR73 4.9 0.1 1.0
PA A:ADP502 4.9 0.4 1.0

Aluminium binding site 2 out of 6 in 3cmu

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Aluminium binding site 2 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1501

b:0.7
occ:1.00
AL A:ALF1501 0.0 0.7 1.0
F4 A:ALF1501 1.8 1.0 1.0
F2 A:ALF1501 1.8 0.6 1.0
F3 A:ALF1501 1.8 0.2 1.0
F1 A:ALF1501 1.8 0.9 1.0
O3B A:ADP1502 1.8 0.1 1.0
PB A:ADP1502 2.8 0.9 1.0
O1B A:ADP1502 2.9 1.0 1.0
NZ A:LYS2250 3.2 0.5 1.0
NZ A:LYS2248 3.4 0.9 1.0
MG A:MG1500 3.4 0.2 1.0
OE2 A:GLU1096 3.4 0.7 1.0
CE A:LYS2250 3.6 0.8 1.0
NZ A:LYS1072 3.6 0.7 1.0
OE1 A:GLU1096 3.6 0.8 1.0
O3A A:ADP1502 3.8 0.1 1.0
CD A:GLU1096 3.9 0.5 1.0
O A:PHE2217 4.0 0.2 1.0
O2B A:ADP1502 4.0 0.1 1.0
CE A:LYS1072 4.0 0.6 1.0
CE A:LYS2248 4.2 0.8 1.0
N A:SER1069 4.3 0.3 1.0
CD2 A:PHE2217 4.6 0.2 1.0
O2A A:ADP1502 4.6 0.1 1.0
OG1 A:THR1073 4.7 0.6 1.0
CA A:GLU1068 4.7 0.5 1.0
C A:PHE2217 4.7 0.1 1.0
CD A:LYS2250 4.8 0.2 1.0
CA A:PHE2217 4.8 0.6 1.0
CB A:PHE2217 4.9 0.2 1.0
PA A:ADP1502 4.9 0.6 1.0

Aluminium binding site 3 out of 6 in 3cmu

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Aluminium binding site 3 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al2501

b:0.7
occ:1.00
AL A:ALF2501 0.0 0.7 1.0
F4 A:ALF2501 1.8 0.5 1.0
F1 A:ALF2501 1.8 0.7 1.0
F3 A:ALF2501 1.8 0.5 1.0
F2 A:ALF2501 1.8 0.8 1.0
O3B A:ADP2502 1.9 0.2 1.0
PB A:ADP2502 2.9 0.5 1.0
O1B A:ADP2502 2.9 0.6 1.0
NZ A:LYS3248 3.0 0.1 1.0
OE2 A:GLU2096 3.3 0.3 1.0
NZ A:LYS3250 3.3 0.3 1.0
MG A:MG2500 3.4 0.5 1.0
NZ A:LYS2072 3.5 0.5 1.0
O A:PHE3217 3.6 0.9 1.0
CE A:LYS3250 3.8 0.5 1.0
OE1 A:GLU2096 3.8 0.8 1.0
CE A:LYS3248 3.9 0.2 1.0
O3A A:ADP2502 3.9 0.7 1.0
CD A:GLU2096 3.9 0.2 1.0
CE A:LYS2072 3.9 0.6 1.0
O2B A:ADP2502 4.1 0.6 1.0
N A:SER2069 4.3 0.8 1.0
CD2 A:PHE3217 4.3 0.5 1.0
CA A:PHE3217 4.4 0.5 1.0
C A:PHE3217 4.4 1.0 1.0
CA A:GLU2068 4.4 0.7 1.0
CB A:PHE3217 4.5 0.4 1.0
O2A A:ADP2502 4.7 0.2 1.0
CG A:PHE3217 4.9 0.7 1.0
CD A:LYS3250 4.9 0.9 1.0
C A:GLU2068 4.9 0.1 1.0
PA A:ADP2502 5.0 0.2 1.0

Aluminium binding site 4 out of 6 in 3cmu

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Aluminium binding site 4 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al3501

b:0.5
occ:1.00
AL A:ALF3501 0.0 0.5 1.0
F4 A:ALF3501 1.8 0.2 1.0
F3 A:ALF3501 1.8 0.0 1.0
F2 A:ALF3501 1.8 0.8 1.0
F1 A:ALF3501 1.8 0.5 1.0
O3B A:ADP3502 1.9 0.8 1.0
PB A:ADP3502 2.9 0.2 1.0
O1B A:ADP3502 2.9 0.2 1.0
NZ A:LYS4250 3.3 0.9 1.0
OE2 A:GLU3096 3.3 0.1 1.0
NZ A:LYS4248 3.4 0.1 1.0
MG A:MG3500 3.4 0.4 1.0
NZ A:LYS3072 3.6 0.6 1.0
CE A:LYS4250 3.6 0.1 1.0
OE1 A:GLU3096 3.7 0.5 1.0
O3A A:ADP3502 3.9 0.8 1.0
CD A:GLU3096 3.9 0.6 1.0
O A:PHE4217 3.9 0.5 1.0
CE A:LYS3072 4.0 0.8 1.0
O2B A:ADP3502 4.1 0.4 1.0
CE A:LYS4248 4.2 0.1 1.0
N A:SER3069 4.3 0.1 1.0
CD2 A:PHE4217 4.5 0.5 1.0
O2A A:ADP3502 4.6 0.2 1.0
CA A:GLU3068 4.6 0.8 1.0
OG1 A:THR3073 4.7 0.9 1.0
C A:PHE4217 4.7 0.6 1.0
CA A:PHE4217 4.8 0.8 1.0
CD A:LYS4250 4.8 0.6 1.0
CB A:PHE4217 4.9 0.6 1.0
PA A:ADP3502 4.9 0.1 1.0

Aluminium binding site 5 out of 6 in 3cmu

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Aluminium binding site 5 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al4501

b:0.7
occ:1.00
AL A:ALF4501 0.0 0.7 1.0
F4 A:ALF4501 1.8 0.5 1.0
F2 A:ALF4501 1.8 0.7 1.0
F3 A:ALF4501 1.8 0.2 1.0
F1 A:ALF4501 1.8 0.9 1.0
O3B A:ADP4502 1.9 0.5 1.0
PB A:ADP4502 2.9 0.7 1.0
O1B A:ADP4502 2.9 0.8 1.0
OE2 A:GLU4096 3.2 0.4 1.0
NZ A:LYS5250 3.2 1.0 1.0
MG A:MG4500 3.4 0.1 1.0
NZ A:LYS4072 3.4 0.6 1.0
OE1 A:GLU4096 3.6 0.2 1.0
CE A:LYS5250 3.6 0.1 1.0
NZ A:LYS5248 3.7 0.5 1.0
CD A:GLU4096 3.8 0.8 1.0
CE A:LYS4072 3.8 0.8 1.0
O3A A:ADP4502 3.8 0.5 1.0
O2B A:ADP4502 4.1 0.6 1.0
O A:PHE5217 4.1 0.4 1.0
N A:SER4069 4.4 0.4 1.0
CE A:LYS5248 4.5 0.9 1.0
O2A A:ADP4502 4.6 0.8 1.0
CD2 A:PHE5217 4.6 0.1 1.0
CA A:GLU4068 4.7 0.8 1.0
OG1 A:THR4073 4.7 0.4 1.0
C A:PHE5217 4.9 0.9 1.0
CD A:LYS5250 4.9 0.9 1.0
PA A:ADP4502 4.9 1.0 1.0
CA A:PHE5217 5.0 0.9 1.0
CB A:PHE5217 5.0 0.9 1.0

Aluminium binding site 6 out of 6 in 3cmu

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Aluminium binding site 6 out of 6 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al5501

b:0.1
occ:1.00
AL A:ALF5501 0.0 0.1 1.0
F3 A:ALF5501 1.8 0.5 1.0
F4 A:ALF5501 1.8 0.3 1.0
F1 A:ALF5501 1.8 0.9 1.0
F2 A:ALF5501 1.8 0.7 1.0
O3B A:ADP5502 2.1 0.5 1.0
PB A:ADP5502 3.1 0.4 1.0
O1B A:ADP5502 3.2 0.5 1.0
NZ A:LYS5072 3.4 0.3 1.0
OE2 A:GLU5096 3.5 0.6 1.0
MG A:MG5500 3.8 53.4 1.0
CE A:LYS5072 4.0 0.5 1.0
N A:SER5069 4.0 0.5 1.0
CA A:GLU5068 4.0 0.9 1.0
O3A A:ADP5502 4.1 0.3 1.0
OE1 A:GLU5096 4.2 0.3 1.0
CD A:GLU5096 4.2 0.4 1.0
O2B A:ADP5502 4.3 0.2 1.0
C A:GLU5068 4.6 0.6 1.0
CB A:GLU5068 4.6 0.1 1.0
O2A A:ADP5502 4.8 0.2 1.0
O A:PRO5067 4.9 0.1 1.0
N A:GLU5068 5.0 0.9 1.0

Reference:

Z.Chen, H.Yang, N.P.Pavletich. Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures. Nature V. 453 489 2008.
ISSN: ISSN 0028-0836
PubMed: 18497818
DOI: 10.1038/NATURE06971
Page generated: Sat Dec 12 01:32:13 2020

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