Atomistry » Aluminium » PDB 2xzl-3wgu » 3cmx
Atomistry »
  Aluminium »
    PDB 2xzl-3wgu »
      3cmx »

Aluminium in PDB 3cmx: Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures

Protein crystallography data

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmx was solved by N.P.Pavletich, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 3.40
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 159.000, 300.500, 80.100, 90.00, 90.00, 90.00
R / Rfree (%) 23.8 / 25.6

Other elements in 3cmx:

The structure of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures also contains other interesting chemical elements:

Fluorine (F) 40 atoms
Magnesium (Mg) 10 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures (pdb code 3cmx). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 10 binding sites of Aluminium where determined in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures, PDB code: 3cmx:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Aluminium binding site 1 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 1 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al501

b:22.5
occ:1.00
 AL A:ALF501 0.0 22.5 1.0
F1 A:ALF501 1.8 21.4 1.0
F4 A:ALF501 1.8 17.6 1.0
F3 A:ALF501 1.8 21.5 1.0
F2 A:ALF501 1.8 23.0 1.0
O3B A:ADP502 1.9 26.5 1.0
PB A:ADP502 3.1 28.4 1.0
NZ A:LYS1250 3.4 32.0 1.0
MG A:MG500 3.4 24.3 1.0
O1B A:ADP502 3.4 25.2 1.0
OE2 A:GLU96 3.6 37.7 1.0
NZ A:LYS72 3.6 15.7 1.0
O A:PHE1217 3.8 25.1 1.0
CE A:LYS1250 3.9 30.4 1.0
NZ A:LYS1248 3.9 24.8 1.0
OE1 A:GLU96 4.0 39.3 1.0
O2B A:ADP502 4.1 29.5 1.0
CE A:LYS72 4.1 18.5 1.0
CD A:GLU96 4.2 35.4 1.0
O3A A:ADP502 4.2 26.5 1.0
N A:SER69 4.3 25.9 1.0
CD2 A:PHE1217 4.5 19.8 1.0
O2A A:ADP502 4.6 26.0 1.0
CE A:LYS1248 4.6 25.9 1.0
CA A:GLU68 4.7 26.9 1.0
C A:PHE1217 4.7 24.6 1.0
OG1 A:THR73 4.8 24.2 1.0
CA A:PHE1217 4.9 24.1 1.0
CB A:GLU68 4.9 28.2 1.0
CD A:LYS1250 4.9 28.2 1.0

Aluminium binding site 2 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 2 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1501

b:3.0
occ:1.00
 AL A:ALF1501 0.0 3.0 1.0
F1 A:ALF1501 1.8 4.2 1.0
F3 A:ALF1501 1.8 2.0 1.0
F4 A:ALF1501 1.8 4.3 1.0
F2 A:ALF1501 1.8 5.7 1.0
O3B A:ADP1502 1.9 2.0 1.0
PB A:ADP1502 3.0 2.0 1.0
O1B A:ADP1502 3.2 2.2 1.0
NZ A:LYS2250 3.3 27.7 1.0
MG A:MG1500 3.4 3.5 1.0
CE A:LYS2250 3.7 27.8 1.0
NZ A:LYS2248 3.8 19.7 1.0
OE2 A:GLU1096 3.9 37.1 1.0
O A:PHE2217 3.9 26.2 1.0
NZ A:LYS1072 4.0 17.6 1.0
O3A A:ADP1502 4.1 2.4 1.0
O2B A:ADP1502 4.1 3.9 1.0
N A:SER1069 4.1 24.0 1.0
OE1 A:GLU1096 4.2 38.0 1.0
CE A:LYS2248 4.4 20.2 1.0
CD A:GLU1096 4.4 34.7 1.0
CE A:LYS1072 4.5 19.9 1.0
O2A A:ADP1502 4.6 2.0 1.0
OG1 A:THR1073 4.7 13.4 1.0
CD A:LYS2250 4.7 27.0 1.0
CD2 A:PHE2217 4.8 20.1 1.0
CA A:GLU1068 4.8 22.5 1.0
C A:PHE2217 4.9 24.4 1.0
CA A:SER1069 4.9 24.0 1.0
CB A:GLU1068 5.0 22.8 1.0

Aluminium binding site 3 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 3 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al2501

b:2.0
occ:1.00
 AL A:ALF2501 0.0 2.0 1.0
F1 A:ALF2501 1.8 2.0 1.0
F3 A:ALF2501 1.8 2.0 1.0
F4 A:ALF2501 1.8 2.0 1.0
F2 A:ALF2501 1.8 2.0 1.0
O3B A:ADP2502 1.9 2.0 1.0
PB A:ADP2502 3.1 2.0 1.0
O1B A:ADP2502 3.4 2.0 1.0
MG A:MG2500 3.4 2.0 1.0
NZ A:LYS3250 3.5 27.9 1.0
NZ A:LYS3248 3.7 20.6 1.0
O A:PHE3217 3.8 24.7 1.0
NZ A:LYS2072 3.9 19.4 1.0
OE2 A:GLU2096 3.9 36.7 1.0
CE A:LYS3250 3.9 27.3 1.0
N A:SER2069 4.1 25.2 1.0
O2B A:ADP2502 4.1 2.0 1.0
OE1 A:GLU2096 4.2 40.6 1.0
O3A A:ADP2502 4.2 2.0 1.0
CE A:LYS3248 4.4 21.2 1.0
CD A:GLU2096 4.4 35.8 1.0
CD2 A:PHE3217 4.5 21.6 1.0
CE A:LYS2072 4.5 19.3 1.0
O2A A:ADP2502 4.6 2.0 1.0
C A:PHE3217 4.7 22.8 1.0
CA A:GLU2068 4.7 24.6 1.0
CA A:PHE3217 4.7 22.3 1.0
CB A:GLU2068 4.8 26.6 1.0
OG1 A:THR2073 4.8 13.8 1.0
CA A:SER2069 4.9 25.8 1.0
C A:GLU2068 4.9 24.7 1.0
CD A:LYS3250 4.9 24.9 1.0

Aluminium binding site 4 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 4 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al3501

b:2.0
occ:1.00
 AL A:ALF3501 0.0 2.0 1.0
F1 A:ALF3501 1.8 2.0 1.0
F4 A:ALF3501 1.8 2.0 1.0
F3 A:ALF3501 1.8 2.0 1.0
F2 A:ALF3501 1.8 2.0 1.0
O3B A:ADP3502 1.9 2.0 1.0
PB A:ADP3502 3.0 2.0 1.0
O1B A:ADP3502 3.3 2.0 1.0
NZ A:LYS4250 3.3 30.4 1.0
MG A:MG3500 3.3 2.0 1.0
O A:PHE4217 3.8 22.2 1.0
CE A:LYS4250 3.8 30.8 1.0
OE2 A:GLU3096 3.8 33.9 1.0
NZ A:LYS4248 3.9 22.2 1.0
NZ A:LYS3072 3.9 17.8 1.0
O2B A:ADP3502 4.1 2.0 1.0
OE1 A:GLU3096 4.1 38.5 1.0
O3A A:ADP3502 4.2 2.0 1.0
N A:SER3069 4.2 25.8 1.0
CD A:GLU3096 4.3 34.7 1.0
CE A:LYS3072 4.5 19.3 1.0
CD2 A:PHE4217 4.6 19.3 1.0
CE A:LYS4248 4.6 21.2 1.0
C A:PHE4217 4.7 21.5 1.0
O2A A:ADP3502 4.7 2.0 1.0
OG1 A:THR3073 4.7 15.2 1.0
CA A:PHE4217 4.8 21.3 1.0
CA A:GLU3068 4.8 25.0 1.0
CD A:LYS4250 4.9 27.7 1.0
CA A:SER3069 5.0 25.5 1.0
CB A:GLU3068 5.0 24.6 1.0

Aluminium binding site 5 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 5 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al4501

b:40.5
occ:1.00
 AL A:ALF4501 0.0 40.5 1.0
F3 A:ALF4501 1.8 39.7 1.0
F2 A:ALF4501 1.8 36.4 1.0
F4 A:ALF4501 1.8 38.9 1.0
F1 A:ALF4501 1.8 40.7 1.0
O3B A:ADP4502 2.1 12.9 1.0
PB A:ADP4502 3.2 12.3 1.0
MG A:MG4500 3.2 2.0 1.0
O1B A:ADP4502 3.3 11.1 1.0
OE2 A:GLU4096 3.8 38.5 1.0
NZ A:LYS4072 3.9 19.1 1.0
OE1 A:GLU4096 3.9 40.6 1.0
O2B A:ADP4502 4.2 13.7 1.0
CD A:GLU4096 4.3 35.5 1.0
O3A A:ADP4502 4.3 13.6 1.0
OG1 A:THR4073 4.3 24.4 1.0
CE A:LYS4072 4.3 18.4 1.0
N A:SER4069 4.4 24.9 1.0
O2A A:ADP4502 4.6 12.4 1.0

Aluminium binding site 6 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 6 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al501

b:2.0
occ:1.00
 AL D:ALF501 0.0 2.0 1.0
F1 D:ALF501 1.8 2.0 1.0
F3 D:ALF501 1.8 2.0 1.0
F4 D:ALF501 1.8 2.0 1.0
F2 D:ALF501 1.8 2.0 1.0
O3B D:ADP502 1.9 5.5 1.0
PB D:ADP502 3.1 5.5 1.0
MG D:MG500 3.2 5.9 1.0
NZ D:LYS1250 3.4 30.3 1.0
O1B D:ADP502 3.4 5.0 1.0
CE D:LYS1250 3.7 29.7 1.0
NZ D:LYS1248 3.7 21.9 1.0
O D:PHE1217 3.9 25.4 1.0
OE2 D:GLU96 3.9 40.7 1.0
NZ D:LYS72 3.9 20.3 1.0
OE1 D:GLU96 4.1 40.3 1.0
O2B D:ADP502 4.2 4.7 1.0
N D:SER69 4.2 27.6 1.0
O3A D:ADP502 4.3 4.5 1.0
CE D:LYS1248 4.3 21.3 1.0
CD D:GLU96 4.4 37.3 1.0
CE D:LYS72 4.5 20.6 1.0
O2A D:ADP502 4.5 3.4 1.0
OG1 D:THR73 4.5 20.1 1.0
CD D:LYS1250 4.7 26.4 1.0
CD2 D:PHE1217 4.7 18.4 1.0
C D:PHE1217 4.8 25.1 1.0
CA D:GLU68 4.9 26.5 1.0
CA D:SER69 4.9 28.1 1.0
CA D:PHE1217 4.9 25.0 1.0

Aluminium binding site 7 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 7 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al1501

b:2.0
occ:1.00
 AL D:ALF1501 0.0 2.0 1.0
F1 D:ALF1501 1.8 2.0 1.0
F4 D:ALF1501 1.8 2.0 1.0
F3 D:ALF1501 1.8 2.0 1.0
F2 D:ALF1501 1.8 2.0 1.0
O3B D:ADP1502 1.9 2.0 1.0
PB D:ADP1502 3.1 2.0 1.0
MG D:MG1500 3.3 2.0 1.0
O1B D:ADP1502 3.4 2.0 1.0
NZ D:LYS2250 3.5 33.7 1.0
NZ D:LYS2248 3.6 27.7 1.0
O D:PHE2217 3.8 20.4 1.0
CE D:LYS2250 3.9 30.3 1.0
NZ D:LYS1072 3.9 19.9 1.0
OE2 D:GLU1096 3.9 33.1 1.0
N D:SER1069 4.1 26.6 1.0
OE1 D:GLU1096 4.2 36.9 1.0
O2B D:ADP1502 4.2 2.0 1.0
CE D:LYS2248 4.3 23.6 1.0
O3A D:ADP1502 4.3 2.1 1.0
CD D:GLU1096 4.4 31.9 1.0
CE D:LYS1072 4.5 20.2 1.0
CD2 D:PHE2217 4.6 17.6 1.0
O2A D:ADP1502 4.6 5.0 1.0
CA D:GLU1068 4.7 25.9 1.0
C D:PHE2217 4.7 20.9 1.0
CA D:PHE2217 4.8 21.5 1.0
CB D:GLU1068 4.8 27.4 1.0
CD D:LYS2250 4.8 28.0 1.0
OG1 D:THR1073 4.9 18.1 1.0
CA D:SER1069 4.9 26.6 1.0
C D:GLU1068 4.9 26.2 1.0

Aluminium binding site 8 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 8 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al2501

b:2.0
occ:1.00
 AL D:ALF2501 0.0 2.0 1.0
F1 D:ALF2501 1.8 2.0 1.0
F4 D:ALF2501 1.8 2.0 1.0
F3 D:ALF2501 1.8 2.0 1.0
F2 D:ALF2501 1.8 2.0 1.0
O3B D:ADP2502 1.8 2.0 1.0
PB D:ADP2502 3.0 2.0 1.0
O1B D:ADP2502 3.2 2.0 1.0
MG D:MG2500 3.3 2.0 1.0
NZ D:LYS3250 3.5 27.6 1.0
OE2 D:GLU2096 3.8 36.9 1.0
NZ D:LYS2072 3.8 25.5 1.0
CE D:LYS3250 3.9 25.9 1.0
O D:PHE3217 4.0 23.1 1.0
NZ D:LYS3248 4.0 16.1 1.0
OE1 D:GLU2096 4.0 39.7 1.0
O2B D:ADP2502 4.0 2.0 1.0
O3A D:ADP2502 4.2 2.0 1.0
N D:SER2069 4.2 23.5 1.0
CD D:GLU2096 4.3 35.7 1.0
CE D:LYS2072 4.3 25.5 1.0
OG1 D:THR2073 4.5 16.5 1.0
CD2 D:PHE3217 4.6 19.4 1.0
CE D:LYS3248 4.7 15.9 1.0
O2A D:ADP2502 4.7 2.0 1.0
CA D:GLU2068 4.9 23.7 1.0
C D:PHE3217 4.9 22.5 1.0
CA D:PHE3217 5.0 22.1 1.0
CA D:SER2069 5.0 22.7 1.0
CD D:LYS3250 5.0 22.1 1.0

Aluminium binding site 9 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 9 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 9 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al3501

b:2.0
occ:1.00
 AL D:ALF3501 0.0 2.0 1.0
F1 D:ALF3501 1.8 2.0 1.0
F4 D:ALF3501 1.8 2.0 1.0
F3 D:ALF3501 1.8 3.6 1.0
F2 D:ALF3501 1.8 6.2 1.0
O3B D:ADP3502 1.9 2.0 1.0
PB D:ADP3502 3.0 2.0 1.0
O1B D:ADP3502 3.3 2.0 1.0
NZ D:LYS4250 3.4 27.3 1.0
MG D:MG3500 3.4 6.3 1.0
NZ D:LYS4248 3.6 25.8 1.0
CE D:LYS4250 3.7 26.5 1.0
O D:PHE4217 3.8 23.3 1.0
NZ D:LYS3072 3.9 16.2 1.0
N D:SER3069 4.0 23.5 1.0
O2B D:ADP3502 4.0 2.7 1.0
OE2 D:GLU3096 4.1 36.0 1.0
O3A D:ADP3502 4.2 2.0 1.0
CE D:LYS4248 4.2 23.3 1.0
OE1 D:GLU3096 4.4 39.7 1.0
O2A D:ADP3502 4.5 2.0 1.0
CE D:LYS3072 4.5 17.9 1.0
CD D:GLU3096 4.6 35.2 1.0
CA D:GLU3068 4.6 24.6 1.0
CD D:LYS4250 4.7 25.7 1.0
CD2 D:PHE4217 4.7 18.0 1.0
C D:PHE4217 4.7 22.6 1.0
CA D:SER3069 4.7 23.8 1.0
CB D:GLU3068 4.8 25.7 1.0
OG1 D:THR3073 4.8 16.4 1.0
C D:GLU3068 4.8 24.1 1.0
CA D:PHE4217 4.8 23.0 1.0

Aluminium binding site 10 out of 10 in 3cmx

Go back to Aluminium Binding Sites List in 3cmx
Aluminium binding site 10 out of 10 in the Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 10 of Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al4501

b:32.4
occ:1.00
 AL D:ALF4501 0.0 32.4 1.0
F4 D:ALF4501 1.8 32.5 1.0
F3 D:ALF4501 1.8 30.9 1.0
F1 D:ALF4501 1.8 30.5 1.0
F2 D:ALF4501 1.8 26.7 1.0
O3B D:ADP4502 1.9 24.9 1.0
PB D:ADP4502 3.3 19.7 1.0
MG D:MG4500 3.4 17.4 1.0
O1B D:ADP4502 3.6 18.7 1.0
OE2 D:GLU4096 3.9 38.9 1.0
NZ D:LYS4072 3.9 14.9 1.0
N D:SER4069 4.1 24.6 1.0
O2B D:ADP4502 4.3 21.0 1.0
O3A D:ADP4502 4.3 18.1 1.0
OE1 D:GLU4096 4.3 38.9 1.0
CD D:GLU4096 4.5 35.2 1.0
CA D:GLU4068 4.5 25.0 1.0
CE D:LYS4072 4.6 15.2 1.0
CB D:GLU4068 4.6 27.3 1.0
C D:GLU4068 4.9 24.1 1.0
CA D:SER4069 4.9 24.7 1.0
O2A D:ADP4502 5.0 17.6 1.0

Reference:

Z.Chen, H.Yang, N.P.Pavletich. Mechanism of Homologous Recombination From the Reca-Ssdna/Dsdna Structures. Nature V. 453 489 2008.
ISSN: ISSN 0028-0836
PubMed: 18497818
DOI: 10.1038/NATURE06971
Page generated: Wed Jul 10 09:35:53 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy