Aluminium in PDB 3wgv: Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin

All present enzymatic activity of Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin:
3.6.3.9;

The structure of Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin, PDB code: 3wgv was solved by R.Kanai, H.Ogawa, B.Vilsen, F.Cornelius, C.Toyoshima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.99 / 2.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	106.285, 210.183, 256.086, 90.00, 90.00, 90.00
R / Rfree (%)	27 / 29.8

The structure of Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Magnesium	(Mg)	4 atoms
Sodium	(Na)	8 atoms

The binding sites of Aluminium atom in the Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin (pdb code 3wgv). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin, PDB code: 3wgv:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in the Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin within 5.0Å range: probe atom residue distance (Å) B Occ A:Al2002 b:29.8 occ:1.00 AL A:ALF2002 0.0 29.8 1.0 F3 A:ALF2002 1.8 14.4 1.0 F1 A:ALF2002 1.8 19.1 1.0 F4 A:ALF2002 1.8 14.1 1.0 F2 A:ALF2002 1.8 28.4 1.0 O3B A:ADP2004 2.3 16.2 1.0 OD1 A:ASP369 2.4 21.2 1.0 OD2 A:ASP369 2.6 58.3 1.0 CG A:ASP369 2.8 53.4 1.0 MG A:MG2003 3.0 15.1 1.0 PB A:ADP2004 3.1 35.5 1.0 O3A A:ADP2004 3.3 11.4 1.0 O2B A:ADP2004 3.4 47.1 1.0 OG1 A:THR371 3.7 50.1 1.0 N A:THR371 4.0 39.3 1.0 O A:THR371 4.1 21.6 1.0 NZ A:LYS691 4.1 41.8 1.0 ND2 A:ASN713 4.1 37.7 1.0 OG1 A:THR610 4.2 33.1 1.0 N A:LYS370 4.2 38.1 1.0 CB A:ASP369 4.3 22.0 1.0 N A:GLY611 4.4 27.7 1.0 CB A:THR371 4.5 40.7 1.0 O1B A:ADP2004 4.6 10.0 1.0 OD1 A:ASN713 4.6 50.3 1.0 CA A:THR371 4.6 36.6 1.0 O2A A:ADP2004 4.7 21.2 1.0 PA A:ADP2004 4.7 22.7 1.0 CA A:THR610 4.8 29.1 1.0 C A:THR371 4.8 39.5 1.0 CG A:ASN713 4.8 39.5 1.0 CB A:THR610 4.8 31.9 1.0 MG A:MG2001 4.9 61.4 1.0 C A:LYS370 4.9 37.2 1.0 OD1 A:ASP714 4.9 26.9 1.0 CA A:LYS370 4.9 34.3 1.0 OD1 A:ASP710 5.0 36.3 1.0

Aluminium binding site 2 out of 2 in the Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Crystal Structure of A Na+-Bound Na+,K+-Atpase Preceding the E1P State with Oligomycin within 5.0Å range: probe atom residue distance (Å) B Occ C:Al2002 b:20.9 occ:1.00 AL C:ALF2002 0.0 20.9 1.0 F3 C:ALF2002 1.8 0.8 1.0 F1 C:ALF2002 1.8 24.5 1.0 F2 C:ALF2002 1.8 71.1 1.0 F4 C:ALF2002 1.8 51.7 1.0 O3B C:ADP2004 2.3 46.7 1.0 OD1 C:ASP369 2.3 51.9 1.0 OD2 C:ASP369 2.9 51.1 1.0 CG C:ASP369 3.0 52.9 1.0 O3A C:ADP2004 3.0 31.4 1.0 PB C:ADP2004 3.2 53.1 1.0 MG C:MG2003 3.4 51.8 1.0 NZ C:LYS691 3.6 34.1 1.0 O1B C:ADP2004 3.7 57.5 1.0 OG1 C:THR610 4.0 37.2 1.0 N C:GLY611 4.1 36.5 1.0 OG1 C:THR371 4.2 69.2 1.0 O C:HOH2102 4.2 15.3 1.0 ND2 C:ASN713 4.3 58.7 1.0 PA C:ADP2004 4.3 53.9 1.0 N C:THR371 4.4 58.6 1.0 CB C:ASP369 4.4 51.1 1.0 O2B C:ADP2004 4.5 47.1 1.0 N C:LYS370 4.5 55.9 1.0 O C:THR371 4.5 73.4 1.0 MG C:MG2001 4.5 55.0 1.0 O1A C:ADP2004 4.6 51.1 1.0 CA C:THR610 4.6 36.7 1.0 CB C:THR371 4.7 61.3 1.0 CB C:THR610 4.8 37.5 1.0 C C:THR610 4.8 70.0 1.0 OD1 C:ASN713 4.9 46.4 1.0 CA C:GLY611 4.9 36.6 1.0 CE C:LYS691 4.9 34.5 1.0 O2A C:ADP2004 4.9 51.6 1.0 CA C:THR371 5.0 61.5 1.0

R.Kanai, H.Ogawa, B.Vilsen, F.Cornelius, C.Toyoshima. Crystal Structure of A NA1-Bound NA1,K1-Atpase Preceding the E1P State Nature V. 502 201 2013.
ISSN: ISSN 0028-0836