Aluminium in PDB 4esv: A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Enzymatic activity of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
All present enzymatic activity of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates:
3.6.4.12;
Protein crystallography data
The structure of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates, PDB code: 4esv
was solved by
O.Itsathitphaisarn,
R.A.Wing,
W.K.Eliason,
J.Wang,
T.A.Steitz,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.92 /
3.20
|
Space group
|
P 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
149.124,
180.321,
279.128,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
24.2 /
28.9
|
Other elements in 4esv:
The structure of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
(pdb code 4esv). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 10 binding sites of Aluminium where determined in the
A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates, PDB code: 4esv:
Jump to Aluminium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Aluminium binding site 1 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 1 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al504
b:84.5
occ:1.00
|
AL
|
A:ALF504
|
0.0
|
84.5
|
1.0
|
F2
|
A:ALF504
|
1.8
|
93.2
|
1.0
|
F3
|
A:ALF504
|
1.8
|
97.1
|
1.0
|
F4
|
A:ALF504
|
1.8
|
97.9
|
1.0
|
F1
|
A:ALF504
|
1.8
|
89.6
|
1.0
|
O3B
|
A:GDP502
|
2.4
|
83.1
|
1.0
|
PB
|
A:GDP502
|
3.3
|
81.8
|
1.0
|
O1B
|
A:GDP502
|
3.3
|
70.6
|
1.0
|
NH2
|
F:ARG420
|
3.5
|
85.0
|
1.0
|
CA
|
A:CA503
|
3.7
|
0.0
|
1.0
|
NZ
|
A:LYS216
|
3.8
|
80.1
|
1.0
|
OE1
|
A:GLU241
|
3.8
|
0.1
|
1.0
|
O
|
F:GLN388
|
4.0
|
81.1
|
1.0
|
O3A
|
A:GDP502
|
4.0
|
85.9
|
1.0
|
OE1
|
A:GLN362
|
4.2
|
92.5
|
1.0
|
NZ
|
F:LYS418
|
4.3
|
72.6
|
1.0
|
N
|
A:SER213
|
4.3
|
84.7
|
1.0
|
CZ
|
F:ARG420
|
4.5
|
83.0
|
1.0
|
OE2
|
A:GLU241
|
4.5
|
0.6
|
1.0
|
CD
|
A:GLU241
|
4.5
|
0.9
|
1.0
|
NE
|
F:ARG420
|
4.5
|
76.6
|
1.0
|
O2B
|
A:GDP502
|
4.6
|
69.5
|
1.0
|
CA
|
A:PRO212
|
4.6
|
75.7
|
1.0
|
CE
|
F:LYS418
|
4.7
|
71.6
|
1.0
|
C
|
F:GLN388
|
4.8
|
75.7
|
1.0
|
CA
|
F:GLN388
|
4.8
|
72.6
|
1.0
|
CB
|
A:PRO212
|
4.9
|
74.7
|
1.0
|
NE2
|
A:GLN362
|
4.9
|
77.9
|
1.0
|
CD
|
A:GLN362
|
5.0
|
86.2
|
1.0
|
|
Aluminium binding site 2 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 2 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al503
b:70.4
occ:1.00
|
AL
|
C:ALF503
|
0.0
|
70.4
|
1.0
|
F1
|
C:ALF503
|
1.8
|
80.6
|
1.0
|
F4
|
C:ALF503
|
1.8
|
66.7
|
1.0
|
F2
|
C:ALF503
|
1.8
|
88.6
|
1.0
|
F3
|
C:ALF503
|
1.8
|
86.8
|
1.0
|
O3B
|
C:GDP501
|
2.3
|
67.3
|
1.0
|
O1B
|
C:GDP501
|
3.2
|
66.6
|
1.0
|
PB
|
C:GDP501
|
3.3
|
73.4
|
1.0
|
NH2
|
B:ARG420
|
3.4
|
65.9
|
1.0
|
NZ
|
C:LYS216
|
3.7
|
74.3
|
1.0
|
CA
|
C:CA502
|
3.8
|
0.2
|
1.0
|
OE1
|
C:GLU241
|
3.8
|
0.7
|
1.0
|
NZ
|
B:LYS418
|
3.9
|
65.3
|
1.0
|
O3A
|
C:GDP501
|
3.9
|
78.0
|
1.0
|
O
|
B:GLN388
|
4.1
|
83.7
|
1.0
|
N
|
C:SER213
|
4.3
|
79.7
|
1.0
|
OE1
|
C:GLN362
|
4.3
|
91.6
|
1.0
|
CE
|
B:LYS418
|
4.4
|
70.3
|
1.0
|
CZ
|
B:ARG420
|
4.4
|
64.0
|
1.0
|
OE2
|
C:GLU241
|
4.5
|
0.3
|
1.0
|
O2B
|
C:GDP501
|
4.5
|
66.6
|
1.0
|
NE
|
B:ARG420
|
4.5
|
64.1
|
1.0
|
CD
|
C:GLU241
|
4.6
|
0.7
|
1.0
|
CA
|
C:PRO212
|
4.6
|
72.8
|
1.0
|
CA
|
B:GLN388
|
4.8
|
77.7
|
1.0
|
CB
|
C:PRO212
|
4.9
|
73.2
|
1.0
|
C
|
B:GLN388
|
4.9
|
79.6
|
1.0
|
C
|
C:PRO212
|
5.0
|
74.8
|
1.0
|
CE
|
C:LYS216
|
5.0
|
68.3
|
1.0
|
|
Aluminium binding site 3 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 3 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 3 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al504
b:77.9
occ:1.00
|
AL
|
C:ALF504
|
0.0
|
77.9
|
1.0
|
F1
|
C:ALF504
|
1.7
|
67.4
|
1.0
|
F3
|
C:ALF504
|
1.8
|
74.6
|
1.0
|
F2
|
C:ALF504
|
1.8
|
92.7
|
1.0
|
F4
|
C:ALF504
|
1.8
|
94.9
|
1.0
|
O3B
|
D:GDP501
|
2.2
|
65.8
|
1.0
|
CA
|
D:CA502
|
3.2
|
90.6
|
1.0
|
PB
|
D:GDP501
|
3.2
|
80.0
|
1.0
|
O1B
|
D:GDP501
|
3.2
|
65.2
|
1.0
|
NH2
|
C:ARG420
|
3.4
|
83.4
|
1.0
|
OE1
|
D:GLU241
|
3.6
|
95.7
|
1.0
|
NZ
|
D:LYS216
|
3.6
|
76.3
|
1.0
|
O3A
|
D:GDP501
|
4.0
|
81.8
|
1.0
|
O
|
D:HOH601
|
4.1
|
69.9
|
1.0
|
CZ
|
C:ARG420
|
4.4
|
85.7
|
1.0
|
OE1
|
D:GLN362
|
4.4
|
91.4
|
1.0
|
CD
|
D:GLU241
|
4.4
|
98.1
|
1.0
|
NE
|
C:ARG420
|
4.5
|
81.1
|
1.0
|
O
|
C:GLN388
|
4.5
|
78.2
|
1.0
|
N
|
D:SER213
|
4.5
|
78.9
|
1.0
|
OE2
|
D:GLU241
|
4.5
|
0.9
|
1.0
|
O2B
|
D:GDP501
|
4.5
|
65.6
|
1.0
|
NZ
|
C:LYS418
|
4.6
|
70.9
|
1.0
|
CE
|
D:LYS216
|
4.8
|
66.7
|
1.0
|
CA
|
D:PRO212
|
4.9
|
73.9
|
1.0
|
CE
|
C:LYS418
|
5.0
|
69.7
|
1.0
|
NE2
|
D:GLN362
|
5.0
|
74.2
|
1.0
|
|
Aluminium binding site 4 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 4 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 4 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Al503
b:93.3
occ:1.00
|
AL
|
D:ALF503
|
0.0
|
93.3
|
1.0
|
F1
|
D:ALF503
|
1.7
|
97.4
|
1.0
|
F4
|
D:ALF503
|
1.8
|
80.6
|
1.0
|
F3
|
D:ALF503
|
1.8
|
88.5
|
1.0
|
F2
|
D:ALF503
|
1.8
|
0.2
|
1.0
|
O3B
|
E:GDP501
|
2.3
|
86.0
|
1.0
|
CA
|
E:CA502
|
3.1
|
0.1
|
1.0
|
O1B
|
E:GDP501
|
3.3
|
81.1
|
1.0
|
PB
|
E:GDP501
|
3.3
|
92.0
|
1.0
|
NH2
|
D:ARG420
|
3.6
|
89.1
|
1.0
|
OE1
|
E:GLU241
|
3.6
|
0.2
|
1.0
|
NZ
|
E:LYS216
|
3.6
|
80.6
|
1.0
|
O3A
|
E:GDP501
|
4.1
|
88.0
|
1.0
|
O
|
D:GLN388
|
4.3
|
89.2
|
1.0
|
CD
|
E:GLU241
|
4.5
|
0.7
|
1.0
|
N
|
E:SER213
|
4.5
|
80.0
|
1.0
|
OE1
|
E:GLN362
|
4.5
|
90.8
|
1.0
|
NE
|
D:ARG420
|
4.5
|
87.2
|
1.0
|
CZ
|
D:ARG420
|
4.5
|
88.8
|
1.0
|
O2B
|
E:GDP501
|
4.6
|
72.4
|
1.0
|
OE2
|
E:GLU241
|
4.6
|
0.2
|
1.0
|
NZ
|
D:LYS418
|
4.6
|
83.4
|
1.0
|
CE
|
E:LYS216
|
4.8
|
72.8
|
1.0
|
CA
|
E:PRO212
|
4.9
|
75.8
|
1.0
|
|
Aluminium binding site 5 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 5 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 5 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Al503
b:88.3
occ:1.00
|
AL
|
E:ALF503
|
0.0
|
88.3
|
1.0
|
F4
|
E:ALF503
|
1.8
|
0.6
|
1.0
|
F2
|
E:ALF503
|
1.8
|
88.4
|
1.0
|
F1
|
E:ALF503
|
1.8
|
92.3
|
1.0
|
F3
|
E:ALF503
|
1.8
|
0.8
|
1.0
|
O3B
|
F:GDP501
|
2.4
|
81.7
|
1.0
|
NH2
|
E:ARG420
|
3.2
|
89.4
|
1.0
|
PB
|
F:GDP501
|
3.4
|
90.1
|
1.0
|
CA
|
F:CA502
|
3.5
|
92.1
|
1.0
|
O1B
|
F:GDP501
|
3.5
|
93.2
|
1.0
|
OE1
|
F:GLU241
|
3.6
|
0.6
|
1.0
|
O3A
|
F:GDP501
|
3.9
|
93.6
|
1.0
|
NZ
|
F:LYS216
|
4.0
|
80.2
|
1.0
|
O
|
E:GLN388
|
4.1
|
86.8
|
1.0
|
CZ
|
E:ARG420
|
4.2
|
90.9
|
1.0
|
NZ
|
E:LYS418
|
4.2
|
79.2
|
1.0
|
NE
|
E:ARG420
|
4.2
|
89.2
|
1.0
|
CD
|
F:GLU241
|
4.4
|
0.2
|
1.0
|
OE2
|
F:GLU241
|
4.4
|
0.7
|
1.0
|
N
|
F:SER213
|
4.4
|
85.2
|
1.0
|
OE1
|
F:GLN362
|
4.7
|
95.9
|
1.0
|
CE
|
E:LYS418
|
4.7
|
75.7
|
1.0
|
O2B
|
F:GDP501
|
4.7
|
71.3
|
1.0
|
CA
|
F:PRO212
|
4.8
|
75.5
|
1.0
|
|
Aluminium binding site 6 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 6 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 6 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Al502
b:0.7
occ:1.00
|
AL
|
G:ALF502
|
0.0
|
0.7
|
1.0
|
F4
|
G:ALF502
|
1.8
|
0.1
|
1.0
|
F3
|
G:ALF502
|
1.8
|
0.2
|
1.0
|
F2
|
G:ALF502
|
1.8
|
0.4
|
1.0
|
F1
|
G:ALF502
|
1.8
|
0.9
|
1.0
|
O3B
|
G:GDP501
|
2.2
|
0.6
|
1.0
|
O1B
|
G:GDP501
|
3.0
|
0.2
|
1.0
|
PB
|
G:GDP501
|
3.2
|
0.7
|
1.0
|
OE1
|
G:GLU241
|
3.2
|
0.8
|
1.0
|
NZ
|
G:LYS216
|
3.5
|
1.0
|
1.0
|
O3A
|
G:GDP501
|
3.9
|
0.5
|
1.0
|
CD
|
G:GLU241
|
4.3
|
0.0
|
1.0
|
OG1
|
G:THR217
|
4.3
|
0.0
|
1.0
|
O2B
|
G:GDP501
|
4.4
|
0.9
|
1.0
|
NH2
|
L:ARG420
|
4.5
|
0.7
|
1.0
|
NE
|
L:ARG420
|
4.5
|
0.3
|
1.0
|
O
|
L:GLN388
|
4.5
|
0.3
|
1.0
|
OE1
|
G:GLN362
|
4.6
|
0.9
|
1.0
|
OE2
|
G:GLU241
|
4.7
|
0.7
|
1.0
|
CE
|
G:LYS216
|
4.7
|
0.3
|
1.0
|
CZ
|
L:ARG420
|
4.8
|
0.9
|
1.0
|
N
|
G:SER213
|
4.9
|
0.5
|
1.0
|
NZ
|
L:LYS418
|
4.9
|
0.8
|
1.0
|
|
Aluminium binding site 7 out
of 10 in 4esv
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Aluminium Binding Sites List in 4esv
Aluminium binding site 7 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 7 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Al503
b:90.7
occ:1.00
|
AL
|
I:ALF503
|
0.0
|
90.7
|
1.0
|
F3
|
I:ALF503
|
1.8
|
95.1
|
1.0
|
F1
|
I:ALF503
|
1.8
|
89.4
|
1.0
|
F2
|
I:ALF503
|
1.8
|
91.7
|
1.0
|
F4
|
I:ALF503
|
1.8
|
97.1
|
1.0
|
O3B
|
I:GDP501
|
2.2
|
0.1
|
1.0
|
OE1
|
I:GLU241
|
3.1
|
0.6
|
1.0
|
CA
|
I:CA502
|
3.3
|
0.6
|
1.0
|
PB
|
I:GDP501
|
3.3
|
0.5
|
1.0
|
O1B
|
I:GDP501
|
3.4
|
0.2
|
1.0
|
NZ
|
I:LYS216
|
3.6
|
0.6
|
1.0
|
O3A
|
I:GDP501
|
3.8
|
0.2
|
1.0
|
O
|
H:GLN388
|
4.0
|
0.7
|
1.0
|
CD
|
I:GLU241
|
4.1
|
0.6
|
1.0
|
NH2
|
H:ARG420
|
4.1
|
0.4
|
1.0
|
OE2
|
I:GLU241
|
4.3
|
0.3
|
1.0
|
NE
|
H:ARG420
|
4.3
|
0.6
|
1.0
|
OE1
|
I:GLN362
|
4.4
|
0.5
|
1.0
|
NZ
|
H:LYS418
|
4.4
|
0.5
|
1.0
|
O2B
|
I:GDP501
|
4.6
|
74.4
|
1.0
|
CZ
|
H:ARG420
|
4.6
|
0.1
|
1.0
|
N
|
I:SER213
|
4.8
|
0.8
|
1.0
|
CE2
|
I:TYR321
|
4.9
|
0.6
|
1.0
|
CE
|
I:LYS216
|
4.9
|
1.0
|
1.0
|
OG1
|
I:THR217
|
5.0
|
0.5
|
1.0
|
C
|
H:GLN388
|
5.0
|
1.0
|
1.0
|
|
Aluminium binding site 8 out
of 10 in 4esv
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Aluminium Binding Sites List in 4esv
Aluminium binding site 8 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 8 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Al502
b:0.4
occ:1.00
|
AL
|
J:ALF502
|
0.0
|
0.4
|
1.0
|
F2
|
J:ALF502
|
1.8
|
0.8
|
1.0
|
F1
|
J:ALF502
|
1.8
|
0.0
|
1.0
|
F4
|
J:ALF502
|
1.8
|
0.2
|
1.0
|
F3
|
J:ALF502
|
1.8
|
0.7
|
1.0
|
O3B
|
J:GDP501
|
2.3
|
1.0
|
1.0
|
O1B
|
J:GDP501
|
3.2
|
0.8
|
1.0
|
OE1
|
J:GLU241
|
3.2
|
0.8
|
1.0
|
PB
|
J:GDP501
|
3.3
|
0.0
|
1.0
|
NZ
|
J:LYS216
|
3.4
|
0.4
|
1.0
|
O2B
|
J:GDP501
|
4.0
|
0.7
|
1.0
|
OG1
|
J:THR217
|
4.2
|
0.1
|
1.0
|
O1A
|
J:GDP501
|
4.3
|
0.8
|
1.0
|
CD
|
J:GLU241
|
4.4
|
0.7
|
1.0
|
NE
|
I:ARG420
|
4.4
|
0.7
|
1.0
|
NH2
|
I:ARG420
|
4.5
|
0.3
|
1.0
|
CE
|
J:LYS216
|
4.5
|
0.4
|
1.0
|
OE1
|
J:GLN362
|
4.5
|
0.7
|
1.0
|
O3A
|
J:GDP501
|
4.6
|
0.3
|
1.0
|
O
|
I:GLN388
|
4.6
|
0.8
|
1.0
|
CZ
|
I:ARG420
|
4.8
|
0.1
|
1.0
|
OE2
|
J:GLU241
|
4.8
|
0.3
|
1.0
|
N
|
J:SER213
|
4.9
|
0.8
|
1.0
|
NZ
|
I:LYS418
|
5.0
|
0.5
|
1.0
|
|
Aluminium binding site 9 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 9 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 9 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Al502
b:0.0
occ:1.00
|
AL
|
K:ALF502
|
0.0
|
0.0
|
1.0
|
F1
|
K:ALF502
|
1.8
|
0.9
|
1.0
|
F4
|
K:ALF502
|
1.8
|
0.4
|
1.0
|
F3
|
K:ALF502
|
1.8
|
0.9
|
1.0
|
F2
|
K:ALF502
|
1.8
|
0.8
|
1.0
|
O3B
|
K:GDP501
|
2.3
|
0.2
|
1.0
|
PB
|
K:GDP501
|
3.0
|
0.5
|
1.0
|
O2B
|
K:GDP501
|
3.0
|
0.0
|
1.0
|
OE1
|
K:GLU241
|
3.2
|
0.6
|
1.0
|
O1B
|
K:GDP501
|
3.3
|
0.0
|
1.0
|
NZ
|
K:LYS216
|
3.5
|
0.5
|
1.0
|
O
|
J:GLN388
|
4.3
|
0.1
|
1.0
|
CD
|
K:GLU241
|
4.3
|
0.2
|
1.0
|
NH2
|
J:ARG420
|
4.4
|
0.6
|
1.0
|
NZ
|
J:LYS418
|
4.4
|
0.8
|
1.0
|
OG1
|
K:THR217
|
4.5
|
0.6
|
1.0
|
O3A
|
K:GDP501
|
4.5
|
1.0
|
1.0
|
OE1
|
K:GLN362
|
4.6
|
0.6
|
1.0
|
NE
|
J:ARG420
|
4.6
|
0.3
|
1.0
|
CE
|
K:LYS216
|
4.7
|
0.6
|
1.0
|
OE2
|
K:GLU241
|
4.7
|
0.9
|
1.0
|
N
|
K:SER213
|
4.8
|
0.0
|
1.0
|
O1A
|
K:GDP501
|
4.8
|
0.4
|
1.0
|
CZ
|
J:ARG420
|
4.9
|
0.4
|
1.0
|
|
Aluminium binding site 10 out
of 10 in 4esv
Go back to
Aluminium Binding Sites List in 4esv
Aluminium binding site 10 out
of 10 in the A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates
Mono view
Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 10 of A New Twist on the Translocation Mechanism of Helicases From the Structure of Dnab with Its Substrates within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Al502
b:0.5
occ:1.00
|
AL
|
L:ALF502
|
0.0
|
0.5
|
1.0
|
F3
|
L:ALF502
|
1.8
|
0.9
|
1.0
|
F4
|
L:ALF502
|
1.8
|
0.3
|
1.0
|
F1
|
L:ALF502
|
1.8
|
0.6
|
1.0
|
F2
|
L:ALF502
|
1.8
|
0.8
|
1.0
|
O3B
|
L:GDP501
|
2.4
|
1.0
|
1.0
|
O1B
|
L:GDP501
|
3.5
|
0.0
|
1.0
|
OE1
|
L:GLU241
|
3.5
|
0.1
|
1.0
|
PB
|
L:GDP501
|
3.5
|
0.1
|
1.0
|
NZ
|
L:LYS216
|
3.7
|
0.7
|
1.0
|
CA
|
L:CA503
|
3.9
|
0.7
|
1.0
|
O
|
K:GLN388
|
4.0
|
0.5
|
1.0
|
NZ
|
K:LYS418
|
4.0
|
0.6
|
1.0
|
NH2
|
K:ARG420
|
4.4
|
0.1
|
1.0
|
CD
|
L:GLU241
|
4.4
|
0.8
|
1.0
|
N
|
L:SER213
|
4.4
|
0.8
|
1.0
|
O3A
|
L:GDP501
|
4.4
|
0.8
|
1.0
|
OE1
|
L:GLN362
|
4.4
|
0.9
|
1.0
|
O2B
|
L:GDP501
|
4.6
|
0.6
|
1.0
|
NE
|
K:ARG420
|
4.6
|
0.1
|
1.0
|
OE2
|
L:GLU241
|
4.6
|
0.3
|
1.0
|
CE
|
K:LYS418
|
4.7
|
0.6
|
1.0
|
CA
|
L:PRO212
|
4.7
|
0.7
|
1.0
|
CE2
|
L:TYR321
|
4.8
|
0.8
|
1.0
|
CB
|
L:PRO212
|
4.8
|
0.1
|
1.0
|
C
|
K:GLN388
|
4.9
|
0.4
|
1.0
|
CA
|
K:GLN388
|
4.9
|
0.6
|
1.0
|
CZ
|
K:ARG420
|
4.9
|
0.6
|
1.0
|
NE2
|
L:GLN362
|
4.9
|
0.5
|
1.0
|
|
Reference:
O.Itsathitphaisarn,
R.A.Wing,
W.K.Eliason,
J.Wang,
T.A.Steitz.
The Hexameric Helicase Dnab Adopts A Nonplanar Conformation During Translocation. Cell(Cambridge,Mass.) V. 151 267 2012.
ISSN: ISSN 0092-8674
PubMed: 23022319
DOI: 10.1016/J.CELL.2012.09.014
Page generated: Wed Jul 10 09:44:25 2024
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