Aluminium in PDB 4idq: Human Atlastin-1 1-446, N440T, GDPALF4-

The structure of Human Atlastin-1 1-446, N440T, GDPALF4-, PDB code: 4idq was solved by L.J.Byrnes, A.Singh, K.Szeto, N.M.Benvin, J.P.O'donnell, W.R.Zipfel, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.14 / 2.29
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	128.993, 267.084, 62.052, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 25.6

The structure of Human Atlastin-1 1-446, N440T, GDPALF4- also contains other interesting chemical elements:

Fluorine	(F)	16 atoms
Magnesium	(Mg)	4 atoms

The binding sites of Aluminium atom in the Human Atlastin-1 1-446, N440T, GDPALF4- (pdb code 4idq). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Human Atlastin-1 1-446, N440T, GDPALF4-, PDB code: 4idq:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in the Human Atlastin-1 1-446, N440T, GDPALF4-


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Human Atlastin-1 1-446, N440T, GDPALF4- within 5.0Å range: probe atom residue distance (Å) B Occ A:Al502 b:13.1 occ:1.00 AL A:ALF502 0.0 13.1 1.0 F4 A:ALF502 1.8 18.8 1.0 F3 A:ALF502 1.8 12.9 1.0 F2 A:ALF502 1.8 18.6 1.0 F1 A:ALF502 1.8 25.0 1.0 O3B A:GDP501 2.0 16.6 1.0 O A:HOH605 2.0 14.2 1.0 PB A:GDP501 3.3 13.3 1.0 MG A:MG503 3.4 16.0 1.0 O2B A:GDP501 3.6 14.9 1.0 N A:ARG77 3.8 20.8 1.0 NH2 A:ARG77 3.9 16.1 1.0 O1B A:GDP501 4.0 14.1 1.0 NZ A:LYS80 4.0 12.6 1.0 N A:GLU119 4.0 15.6 1.0 O A:HOH604 4.0 12.7 1.0 N A:THR120 4.0 16.7 1.0 NE A:ARG77 4.1 24.3 1.0 N A:GLY149 4.1 17.9 1.0 O A:HOH603 4.1 12.1 1.0 CB A:PHE76 4.2 14.1 1.0 OG1 A:THR120 4.3 14.7 1.0 CB A:THR120 4.3 14.8 1.0 O A:THR120 4.3 21.2 1.0 CA A:PHE76 4.4 18.5 1.0 O3A A:GDP501 4.4 31.8 1.0 CZ A:ARG77 4.4 20.7 1.0 O A:HOH601 4.5 13.5 1.0 CA A:ARG118 4.5 15.1 1.0 CA A:GLY149 4.5 18.2 1.0 CA A:ARG77 4.6 25.1 1.0 CB A:ARG118 4.6 21.0 1.0 C A:PHE76 4.6 16.9 1.0 CA A:THR120 4.7 18.9 1.0 C A:ARG118 4.8 15.4 1.0 CA A:GLU119 4.8 16.6 1.0 C A:GLU119 4.8 16.8 1.0 CE A:LYS80 4.9 12.2 1.0

Aluminium binding site 2 out of 4 in the Human Atlastin-1 1-446, N440T, GDPALF4-


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Human Atlastin-1 1-446, N440T, GDPALF4- within 5.0Å range: probe atom residue distance (Å) B Occ B:Al502 b:13.4 occ:1.00 AL B:ALF502 0.0 13.4 1.0 F1 B:ALF502 1.8 10.6 1.0 F3 B:ALF502 1.8 14.5 1.0 F2 B:ALF502 1.8 26.7 1.0 F4 B:ALF502 1.8 16.6 1.0 O1B B:GDP501 2.0 19.3 1.0 O B:HOH604 2.1 14.8 1.0 PB B:GDP501 3.3 13.2 1.0 MG B:MG503 3.5 24.6 1.0 O2B B:GDP501 3.6 12.3 1.0 N B:ARG77 3.8 17.4 1.0 N B:GLU119 3.9 21.1 1.0 O3B B:GDP501 4.0 16.3 1.0 NH2 B:ARG77 4.0 16.8 1.0 N B:THR120 4.0 17.3 1.0 NZ B:LYS80 4.1 13.5 1.0 O B:HOH603 4.1 7.2 1.0 NE B:ARG77 4.1 16.9 1.0 N B:GLY149 4.2 19.2 1.0 O B:HOH602 4.2 19.7 1.0 CB B:PHE76 4.3 20.7 1.0 CB B:THR120 4.3 16.9 1.0 O B:THR120 4.3 20.0 1.0 OG1 B:THR120 4.4 28.4 1.0 CA B:PHE76 4.4 21.8 1.0 O B:HOH601 4.4 12.0 1.0 O3A B:GDP501 4.5 20.5 1.0 CZ B:ARG77 4.5 17.2 1.0 CA B:ARG118 4.6 17.0 1.0 CA B:ARG77 4.6 19.7 1.0 CA B:GLY149 4.6 14.9 1.0 C B:PHE76 4.6 17.4 1.0 CA B:THR120 4.7 17.3 1.0 CB B:ARG118 4.7 18.5 1.0 CA B:GLU119 4.8 22.6 1.0 C B:ARG118 4.8 17.5 1.0 C B:GLU119 4.8 17.7 1.0 CB B:GLU119 4.9 22.4 1.0 CE B:LYS80 5.0 13.1 1.0

Aluminium binding site 3 out of 4 in the Human Atlastin-1 1-446, N440T, GDPALF4-


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Human Atlastin-1 1-446, N440T, GDPALF4- within 5.0Å range: probe atom residue distance (Å) B Occ C:Al502 b:13.5 occ:1.00 AL C:ALF502 0.0 13.5 1.0 F1 C:ALF502 1.8 12.6 1.0 F3 C:ALF502 1.8 17.0 1.0 F2 C:ALF502 1.8 24.9 1.0 F4 C:ALF502 1.8 19.6 1.0 O1B C:GDP501 2.0 16.3 1.0 O C:HOH604 2.1 11.1 1.0 PB C:GDP501 3.3 12.9 1.0 MG C:MG503 3.5 18.2 1.0 O2B C:GDP501 3.6 12.4 1.0 N C:ARG77 3.9 15.6 1.0 N C:THR120 3.9 17.0 1.0 N C:GLU119 3.9 20.6 1.0 O C:HOH603 4.0 8.1 1.0 O3B C:GDP501 4.0 15.2 1.0 NH2 C:ARG77 4.0 17.2 1.0 N C:GLY149 4.1 12.8 1.0 O C:HOH602 4.1 18.7 1.0 NZ C:LYS80 4.1 14.6 1.0 NE C:ARG77 4.2 18.2 1.0 CB C:THR120 4.3 13.8 1.0 O C:THR120 4.3 20.2 1.0 CB C:PHE76 4.3 16.0 1.0 OG1 C:THR120 4.4 22.2 1.0 O C:HOH601 4.4 8.0 1.0 CA C:PHE76 4.5 21.3 1.0 O3A C:GDP501 4.5 18.4 1.0 CA C:ARG118 4.5 18.4 1.0 CA C:GLY149 4.6 12.5 1.0 CZ C:ARG77 4.6 19.0 1.0 CA C:THR120 4.6 17.7 1.0 CB C:ARG118 4.6 20.3 1.0 CA C:ARG77 4.7 16.1 1.0 C C:PHE76 4.7 20.0 1.0 C C:GLU119 4.8 14.9 1.0 CA C:GLU119 4.8 16.9 1.0 C C:ARG118 4.8 22.5 1.0 C C:THR120 4.9 21.6 1.0 CB C:GLU119 5.0 15.7 1.0

Aluminium binding site 4 out of 4 in the Human Atlastin-1 1-446, N440T, GDPALF4-


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Human Atlastin-1 1-446, N440T, GDPALF4- within 5.0Å range: probe atom residue distance (Å) B Occ D:Al502 b:16.2 occ:1.00 AL D:ALF502 0.0 16.2 1.0 F3 D:ALF502 1.8 16.1 1.0 F1 D:ALF502 1.8 20.8 1.0 F4 D:ALF502 1.8 22.1 1.0 F2 D:ALF502 1.8 15.1 1.0 O3B D:GDP501 2.0 16.4 1.0 O D:HOH604 2.0 13.9 1.0 PB D:GDP501 3.2 11.3 1.0 MG D:MG503 3.5 14.9 1.0 O2B D:GDP501 3.5 7.9 1.0 N D:ARG77 3.8 19.5 1.0 NH2 D:ARG77 3.9 13.7 1.0 NZ D:LYS80 3.9 12.7 1.0 O1B D:GDP501 3.9 10.6 1.0 N D:THR120 4.0 16.4 1.0 N D:GLU119 4.0 16.4 1.0 N D:GLY149 4.1 12.1 1.0 O D:HOH603 4.1 13.6 1.0 O D:HOH601 4.1 11.7 1.0 NE D:ARG77 4.1 24.4 1.0 CB D:PHE76 4.2 12.0 1.0 CB D:THR120 4.3 13.8 1.0 O D:THR120 4.4 22.6 1.0 CA D:PHE76 4.4 18.0 1.0 OG1 D:THR120 4.4 14.6 1.0 O3A D:GDP501 4.4 24.6 1.0 CZ D:ARG77 4.5 22.4 1.0 O D:HOH602 4.5 6.9 1.0 CA D:GLY149 4.5 11.1 1.0 CA D:ARG118 4.5 18.5 1.0 CA D:ARG77 4.6 20.0 1.0 CB D:ARG118 4.6 22.8 1.0 C D:PHE76 4.6 18.7 1.0 CA D:THR120 4.6 17.1 1.0 C D:GLU119 4.8 14.3 1.0 CA D:GLU119 4.8 17.7 1.0 C D:ARG118 4.8 17.9 1.0 CE D:LYS80 4.9 11.6 1.0

L.J.Byrnes, A.Singh, K.Szeto, N.M.Benvin, J.P.O'donnell, W.R.Zipfel, H.Sondermann. Structural Basis For Conformational Switching and Gtp Loading of the Large G Protein Atlastin. Embo J. V. 32 369 2013.
ISSN: ISSN 0261-4189
PubMed: 23334294
DOI: 10.1038/EMBOJ.2012.353