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Aluminium in PDB 4jvs: Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3

Protein crystallography data

The structure of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3, PDB code: 4jvs was solved by Q.Yu, Q.Yao, D.-C.Wang, F.Shao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 2.78
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 95.561, 95.561, 197.724, 90.00, 90.00, 120.00
R / Rfree (%) 22.4 / 26.5

Other elements in 4jvs:

The structure of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 1 atom

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 (pdb code 4jvs). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3, PDB code: 4jvs:

Aluminium binding site 1 out of 1 in 4jvs

Go back to Aluminium Binding Sites List in 4jvs
Aluminium binding site 1 out of 1 in the Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of Lepb Gap Domain From Legionella Drancourtii in Complex with RAB1-Gdp and ALF3 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al401

b:35.1
occ:1.00
AL B:AF3401 0.0 35.1 1.0
O1B B:GDP400 1.6 38.7 1.0
F2 B:AF3401 1.7 35.7 1.0
F1 B:AF3401 1.7 34.8 1.0
F3 B:AF3401 1.7 34.9 1.0
O B:HOH502 2.3 41.3 1.0
PB B:GDP400 3.1 34.3 1.0
NH2 A:ARG447 3.3 35.8 1.0
MG B:MG402 3.3 36.2 1.0
OG B:SER42 3.4 41.5 1.0
OG B:SER20 3.4 31.8 1.0
N B:GLY21 3.5 31.5 1.0
O2B B:GDP400 3.5 36.2 1.0
CA B:SER20 3.7 31.6 1.0
O3A B:GDP400 3.8 35.7 1.0
OE1 B:GLN70 3.8 34.9 1.0
CB B:SER20 4.0 30.3 1.0
NH1 A:ARG447 4.0 32.7 1.0
NZ B:LYS24 4.0 32.8 1.0
C B:SER20 4.1 31.4 1.0
CZ A:ARG447 4.1 31.8 1.0
O3B B:GDP400 4.1 29.2 1.0
NE2 B:GLN70 4.2 33.7 1.0
N B:THR43 4.2 34.9 1.0
OG1 B:THR43 4.4 38.9 1.0
CA B:GLY21 4.5 32.5 1.0
CB B:SER42 4.5 33.5 1.0
N B:GLY69 4.5 35.0 1.0
CA B:SER42 4.5 32.3 1.0
CD B:GLN70 4.6 37.5 1.0
N B:SER20 4.8 34.1 1.0
C B:SER42 4.9 34.0 1.0
O B:ASP19 4.9 33.5 1.0
CE B:LYS24 4.9 32.6 1.0
O B:THR43 5.0 36.3 1.0
CB B:THR43 5.0 39.6 1.0
CA B:ALA68 5.0 35.4 1.0

Reference:

Q.Yu, L.Hu, Q.Yao, Y.Zhu, N.Dong, D.-C.Wang, F.Shao. Structural Analyses of Legionella Lepb Reveal A New Gap Fold That Catalytically Mimics Eukaryotic Rasgap Cell Res. V. 23 775 2013.
ISSN: ISSN 1001-0602
PubMed: 23588383
DOI: 10.1038/CR.2013.54
Page generated: Sat Dec 12 01:33:20 2020

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