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Aluminium in PDB 5fhe: Crystal Structure of Bacteroides PIF1 Bound to Ssdna

Protein crystallography data

The structure of Crystal Structure of Bacteroides PIF1 Bound to Ssdna, PDB code: 5fhe was solved by X.Zhou, W.Ren, S.R.Bharath, H.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.79 / 2.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.442, 87.442, 149.822, 90.00, 90.00, 120.00
R / Rfree (%) 22.3 / 27.7

Other elements in 5fhe:

The structure of Crystal Structure of Bacteroides PIF1 Bound to Ssdna also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Magnesium (Mg) 1 atom

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna (pdb code 5fhe). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna, PDB code: 5fhe:

Aluminium binding site 1 out of 1 in 5fhe

Go back to Aluminium Binding Sites List in 5fhe
Aluminium binding site 1 out of 1 in the Crystal Structure of Bacteroides PIF1 Bound to Ssdna


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of Bacteroides PIF1 Bound to Ssdna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al503

b:66.2
occ:1.00
AL A:ALF503 0.0 66.2 1.0
F4 A:ALF503 1.8 66.4 1.0
F2 A:ALF503 1.8 67.7 1.0
F1 A:ALF503 1.8 66.2 1.0
F3 A:ALF503 1.8 66.2 1.0
O3B A:ADP501 2.4 71.2 1.0
O2B A:ADP501 3.1 71.8 1.0
PB A:ADP501 3.2 70.8 1.0
OE2 A:GLU106 3.4 78.9 1.0
CA A:GLY365 3.5 72.1 1.0
MG A:MG502 3.6 58.6 1.0
NH2 A:ARG188 3.6 85.6 1.0
NH1 A:ARG390 3.6 72.1 1.0
NH2 A:ARG390 3.6 73.9 1.0
N A:GLY365 3.9 73.5 1.0
C A:GLY365 4.1 67.6 1.0
O A:GLY365 4.1 67.0 1.0
NZ A:LYS34 4.1 75.9 1.0
CZ A:ARG390 4.1 73.1 1.0
O3A A:ADP501 4.2 74.0 1.0
N A:GLY31 4.4 84.0 1.0
O1B A:ADP501 4.4 71.9 1.0
OE1 A:GLN145 4.5 72.5 1.0
CD A:GLU106 4.5 78.9 1.0
CE A:LYS34 4.6 76.8 1.0
OG1 A:THR35 4.6 0.1 1.0
NE2 A:GLN145 4.7 76.8 1.0
CZ A:ARG188 4.7 86.4 1.0
O2A A:ADP501 4.7 75.7 1.0
CA A:ALA30 4.8 86.9 1.0
OE1 A:GLU106 4.8 80.8 1.0
NH1 A:ARG188 4.9 87.1 1.0

Reference:

X.Zhou, W.Ren, S.R.Bharath, X.Tang, Y.He, C.Chen, Z.Liu, D.Li, H.Song. Structural and Functional Insights Into the Unwinding Mechanism of Bacteroides Sp PIF1 Cell Rep V. 14 2030 2016.
ISSN: ESSN 2211-1247
PubMed: 26904952
DOI: 10.1016/J.CELREP.2016.02.008
Page generated: Wed Jul 10 09:49:20 2024

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