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Aluminium in PDB 5fhh: Structure of Human PIF1 Helicase Domain Residues 200-641

Enzymatic activity of Structure of Human PIF1 Helicase Domain Residues 200-641

All present enzymatic activity of Structure of Human PIF1 Helicase Domain Residues 200-641:
3.6.4.12;

Protein crystallography data

The structure of Structure of Human PIF1 Helicase Domain Residues 200-641, PDB code: 5fhh was solved by X.Zhou, W.Ren, S.R.Bharath, H.Song, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.06 / 3.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 204.750, 204.750, 77.791, 90.00, 90.00, 120.00
R / Rfree (%) 31 / 35.5

Other elements in 5fhh:

The structure of Structure of Human PIF1 Helicase Domain Residues 200-641 also contains other interesting chemical elements:

Fluorine (F) 8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Structure of Human PIF1 Helicase Domain Residues 200-641 (pdb code 5fhh). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Structure of Human PIF1 Helicase Domain Residues 200-641, PDB code: 5fhh:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 5fhh

Go back to Aluminium Binding Sites List in 5fhh
Aluminium binding site 1 out of 2 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al702

b:0.7
occ:1.00
AL A:ALF702 0.0 0.7 1.0
F1 A:ALF702 1.8 0.0 1.0
F2 A:ALF702 1.8 0.3 1.0
F4 A:ALF702 1.8 91.6 1.0
F3 A:ALF702 1.8 0.8 1.0
O2B A:ADP701 2.4 75.7 1.0
O1B A:ADP701 2.6 61.0 1.0
PB A:ADP701 2.8 62.1 1.0
NE2 A:GLN346 2.9 51.9 1.0
O3B A:ADP701 3.5 53.7 1.0
CD A:GLN346 3.8 48.5 1.0
OE1 A:GLN346 4.0 52.6 1.0
O3A A:ADP701 4.3 57.1 1.0
N A:GLY559 4.3 76.8 1.0
OG A:SER235 4.4 22.7 1.0
NE2 A:GLN558 4.6 67.4 1.0
CE A:LYS234 4.6 38.7 1.0
CA A:GLY559 4.6 86.7 1.0
NZ A:LYS234 4.8 42.4 1.0

Aluminium binding site 2 out of 2 in 5fhh

Go back to Aluminium Binding Sites List in 5fhh
Aluminium binding site 2 out of 2 in the Structure of Human PIF1 Helicase Domain Residues 200-641


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Structure of Human PIF1 Helicase Domain Residues 200-641 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al702

b:0.8
occ:1.00
AL B:ALF702 0.0 0.8 1.0
F4 B:ALF702 1.8 0.2 1.0
F1 B:ALF702 1.8 0.3 1.0
F3 B:ALF702 1.8 0.3 1.0
F2 B:ALF702 1.8 0.4 1.0
OG B:SER235 1.9 0.9 1.0
O B:GLY233 2.3 0.6 1.0
O1A B:ADP701 2.4 0.3 1.0
O5' B:ADP701 2.9 0.7 1.0
O B:GLY231 2.9 0.2 1.0
C5' B:ADP701 3.0 0.7 1.0
PA B:ADP701 3.2 0.3 1.0
CB B:SER235 3.2 0.0 1.0
C B:GLY233 3.3 1.0 1.0
C B:GLY231 3.5 0.3 1.0
O4' B:ADP701 3.5 0.8 1.0
N B:SER235 3.5 0.7 1.0
O3B B:ADP701 3.5 0.4 1.0
C4' B:ADP701 3.8 0.2 1.0
N B:GLY233 3.8 0.7 1.0
CA B:GLY231 3.9 0.5 1.0
CA B:GLY233 3.9 0.4 1.0
CA B:SER235 3.9 0.1 1.0
N B:GLY231 4.0 0.5 1.0
C8 B:ADP701 4.0 0.2 1.0
O2A B:ADP701 4.2 0.7 1.0
O3A B:ADP701 4.3 0.4 1.0
N B:THR232 4.4 0.9 1.0
N B:LYS234 4.4 0.3 1.0
PB B:ADP701 4.5 0.3 1.0
C B:THR232 4.5 0.3 1.0
CB B:LYS234 4.5 0.0 1.0
C1' B:ADP701 4.6 0.2 1.0
N B:TYR236 4.6 1.0 1.0
C B:LYS234 4.6 0.9 1.0
O2B B:ADP701 4.7 0.2 1.0
N9 B:ADP701 4.7 0.9 1.0
C B:SER235 4.7 0.9 1.0
CA B:LYS234 4.7 0.7 1.0
C3' B:ADP701 4.9 0.6 1.0
CA B:THR232 4.9 0.8 1.0

Reference:

X.Zhou, W.Ren, S.R.Bharath, X.Tang, Y.He, C.Chen, Z.Liu, D.Li, H.Song. Structural and Functional Insights Into the Unwinding Mechanism of Bacteroides Sp PIF1 Cell Rep V. 14 2030 2016.
ISSN: ESSN 2211-1247
PubMed: 26904952
DOI: 10.1016/J.CELREP.2016.02.008
Page generated: Wed Jul 10 09:49:51 2024

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