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Aluminium in PDB 5gza: Protein O-Mannose Kinase

Enzymatic activity of Protein O-Mannose Kinase

All present enzymatic activity of Protein O-Mannose Kinase:
2.7.1.183;

Protein crystallography data

The structure of Protein O-Mannose Kinase, PDB code: 5gza was solved by J.Xiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.28 / 2.00
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 70.550, 70.550, 66.935, 90.00, 90.00, 120.00
R / Rfree (%) 19.7 / 21.8

Other elements in 5gza:

The structure of Protein O-Mannose Kinase also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Magnesium (Mg) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Protein O-Mannose Kinase (pdb code 5gza). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Protein O-Mannose Kinase, PDB code: 5gza:

Aluminium binding site 1 out of 1 in 5gza

Go back to Aluminium Binding Sites List in 5gza
Aluminium binding site 1 out of 1 in the Protein O-Mannose Kinase


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Protein O-Mannose Kinase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al404

b:48.1
occ:1.00
AL A:AF3404 0.0 48.1 1.0
F3 A:AF3404 1.7 47.6 1.0
F1 A:AF3404 1.8 45.5 1.0
F2 A:AF3404 1.8 45.7 1.0
O1B A:ADP401 1.9 45.8 1.0
O6 A:MAN406 1.9 48.8 1.0
MG A:MG403 2.9 43.3 1.0
C6 A:MAN406 3.0 51.6 1.0
MG A:MG402 3.0 43.7 1.0
OD2 A:ASP225 3.0 45.3 1.0
PB A:ADP401 3.1 45.8 1.0
O2B A:ADP401 3.3 42.9 1.0
OD2 A:ASP202 3.4 43.4 1.0
O3B A:ADP401 3.6 46.0 1.0
NZ A:LYS208 3.9 53.3 1.0
CG A:ASP225 4.2 43.0 1.0
C5 A:MAN406 4.2 54.2 1.0
O5 A:MAN406 4.3 55.8 1.0
NE2 A:GLN212 4.4 42.7 1.0
CG2 A:VAL90 4.4 44.4 1.0
O3A A:ADP401 4.4 43.3 1.0
N A:ALA89 4.4 50.8 1.0
OE1 A:GLN212 4.4 42.3 1.0
O1A A:ADP401 4.5 40.8 1.0
CG A:ASP202 4.5 43.5 1.0
OD1 A:ASP225 4.6 42.9 1.0
N A:VAL90 4.7 46.0 1.0
CD A:LYS208 4.8 50.8 1.0
CE A:LYS208 4.8 52.6 1.0
CD A:GLN212 4.9 42.5 1.0
CB A:ALA89 4.9 49.4 1.0
OD2 A:ASP227 4.9 38.2 1.0
CB A:VAL90 4.9 44.6 1.0
CA A:GLY88 5.0 52.4 1.0

Reference:

Q.Zhu, D.Venzke, A.S.Walimbe, M.E.Anderson, Q.Fu, L.N.Kinch, W.Wang, X.Chen, N.V.Grishin, N.Huang, L.Yu, J.E.Dixon, K.P.Campbell, J.Xiao. Structure of Protein O-Mannose Kinase Reveals A Unique Active Site Architecture Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27879205
DOI: 10.7554/ELIFE.22238
Page generated: Wed Jul 10 09:49:57 2024

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