Atomistry » Aluminium » PDB 5c2k-6i03 » 5xa8
Atomistry »
  Aluminium »
    PDB 5c2k-6i03 »
      5xa8 »

Aluminium in PDB 5xa8: Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals

Enzymatic activity of Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals

All present enzymatic activity of Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals:
3.6.3.8;

Protein crystallography data

The structure of Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals, PDB code: 5xa8 was solved by Y.Norimatsu, K.Hasegawa, N.Shimizu, C.Toyoshima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 79.64 / 3.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 162.970, 75.020, 152.240, 90.00, 109.31, 90.00
R / Rfree (%) 21.3 / 24.1

Other elements in 5xa8:

The structure of Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals also contains other interesting chemical elements:

Fluorine (F) 4 atoms
Magnesium (Mg) 2 atoms
Calcium (Ca) 2 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals (pdb code 5xa8). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total only one binding site of Aluminium was determined in the Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals, PDB code: 5xa8:

Aluminium binding site 1 out of 1 in 5xa8

Go back to Aluminium Binding Sites List in 5xa8
Aluminium binding site 1 out of 1 in the Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Complete Structure Factors and An Atomic Model of the Calcium Pump (SERCA1A) and Associated Phospholipids in the E1-ALF4-Adp-2CA2+ Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al1004

b:31.8
occ:1.00
 AL A:ALF1004 0.0 31.8 1.0
F3 A:ALF1004 1.8 34.5 1.0
F1 A:ALF1004 1.8 38.2 1.0
F4 A:ALF1004 1.8 27.9 1.0
F2 A:ALF1004 1.8 51.2 1.0
OD1 A:ASP351 2.2 35.6 1.0
O1B A:ADP1006 2.4 49.0 1.0
OD2 A:ASP351 2.9 18.4 1.0
CG A:ASP351 2.9 30.0 1.0
O3A A:ADP1006 3.1 35.3 1.0
PB A:ADP1006 3.3 37.1 1.0
O A:HOH1122 3.4 26.7 1.0
MG A:MG1003 3.4 22.0 1.0
MG A:MG1005 3.7 28.2 1.0
OG1 A:THR625 3.9 31.2 1.0
O3B A:ADP1006 4.0 27.2 1.0
NZ A:LYS684 4.0 25.1 1.0
N A:THR353 4.0 38.8 1.0
CB A:THR353 4.0 39.9 1.0
ND2 A:ASN706 4.0 48.9 1.0
O A:THR353 4.1 32.3 1.0
CB A:ASP351 4.4 17.4 1.0
O A:HOH1211 4.4 37.8 1.0
N A:LYS352 4.4 41.9 1.0
CA A:THR353 4.5 46.6 1.0
N A:GLY626 4.5 29.8 1.0
PA A:ADP1006 4.5 28.0 1.0
O A:HOH1141 4.5 33.8 1.0
OG1 A:THR353 4.5 36.3 1.0
O2B A:ADP1006 4.6 39.1 1.0
O1A A:ADP1006 4.7 34.0 1.0
CA A:THR625 4.7 42.7 1.0
C A:THR353 4.7 28.0 1.0
CB A:THR625 4.8 33.0 1.0
C A:LYS352 5.0 29.2 1.0
CG A:ASN706 5.0 52.2 1.0
OD1 A:ASN706 5.0 57.7 1.0

Reference:

Y.Norimatsu, K.Hasegawa, N.Shimizu, C.Toyoshima. Protein-Phospholipid Interplay Revealed with Crystals of A Calcium Pump. Nature V. 545 193 2017.
ISSN: ESSN 1476-4687
PubMed: 28467821
DOI: 10.1038/NATURE22357
Page generated: Wed Jul 10 09:51:59 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy