Aluminium in PDB 6ks6: Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1

The structure of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 also contains other interesting chemical elements:

Fluorine	(F)	42 atoms
Magnesium	(Mg)	16 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Aluminium atom in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 (pdb code 6ks6). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 14 binding sites of Aluminium where determined in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1, PDB code: 6ks6:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Aluminium binding site 1 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ a:Al603 b:55.7 occ:1.00 AL a:AF3603 0.0 55.7 1.0 F3 a:AF3603 1.6 62.6 1.0 F2 a:AF3603 1.7 47.6 1.0 F1 a:AF3603 1.7 58.2 1.0 O1B a:ADP601 2.7 0.1 1.0 OG1 a:THR98 3.2 95.1 1.0 CB a:ASP65 3.3 99.4 1.0 OD1 a:ASP96 3.4 99.4 1.0 O3B a:ADP601 3.5 0.5 1.0 OD2 a:ASP404 3.6 0.3 1.0 MG a:MG602 3.6 78.9 1.0 PB a:ADP601 3.6 0.6 1.0 OD2 a:ASP65 3.7 99.4 1.0 CG a:ASP65 4.0 99.4 1.0 N a:THR98 4.2 93.0 1.0 N a:GLY97 4.2 94.7 1.0 OG1 a:THR99 4.3 94.5 1.0 O a:HOH701 4.3 74.3 1.0 CG a:ASP404 4.4 0.3 1.0 CB a:THR98 4.4 95.1 1.0 CG a:ASP96 4.5 99.4 1.0 O3A a:ADP601 4.6 0.8 1.0 N a:THR99 4.6 92.2 1.0 CA a:ASP65 4.6 98.9 1.0 CG2 a:THR98 4.8 95.1 1.0 CA a:THR98 4.8 93.0 1.0 CA a:ASP96 4.8 97.7 1.0 O2B a:ADP601 4.8 0.6 1.0 CA a:GLY97 5.0 94.7 1.0 C a:GLY97 5.0 94.7 1.0

Aluminium binding site 2 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Al603 b:55.7 occ:1.00 AL A:AF3603 0.0 55.7 1.0 F3 A:AF3603 1.6 62.6 1.0 F2 A:AF3603 1.7 47.6 1.0 F1 A:AF3603 1.7 58.2 1.0 O1B A:ADP601 2.7 0.1 1.0 OD1 A:ASP65 3.1 99.9 1.0 O3B A:ADP601 3.4 0.5 1.0 PB A:ADP601 3.6 0.6 1.0 NZ A:LYS167 3.7 98.0 1.0 CA A:ASP65 3.7 98.4 1.0 CG A:ASP65 3.8 99.9 1.0 MG A:MG602 4.0 78.9 1.0 OD2 A:ASP404 4.0 99.7 1.0 OG1 A:THR99 4.0 93.1 1.0 CB A:THR98 4.1 95.1 1.0 CB A:ASP65 4.1 99.9 1.0 N A:GLY66 4.1 97.2 1.0 O3A A:ADP601 4.4 0.8 1.0 CE A:LYS167 4.4 98.0 1.0 C A:ASP65 4.5 98.4 1.0 OG1 A:THR98 4.5 95.1 1.0 O A:ASN64 4.6 97.5 1.0 N A:THR99 4.6 92.3 1.0 OD2 A:ASP65 4.7 99.9 1.0 N A:ASP65 4.7 98.4 1.0 N A:THR98 4.8 93.4 1.0 O2B A:ADP601 4.9 0.6 1.0 CG2 A:THR98 4.9 95.1 1.0 CG A:ASP404 4.9 99.7 1.0 CA A:THR98 4.9 93.4 1.0 C A:ASN64 5.0 97.5 1.0

Aluminium binding site 3 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ b:Al603 b:55.7 occ:1.00 AL b:AF3603 0.0 55.7 1.0 F3 b:AF3603 1.6 62.6 1.0 F2 b:AF3603 1.7 47.6 1.0 F1 b:AF3603 1.7 58.2 1.0 O1B b:ADP601 2.6 61.5 1.0 OD1 b:ASP59 3.0 91.7 1.0 MG b:MG602 3.3 78.9 1.0 NZ b:LYS164 3.7 92.5 1.0 OG1 b:THR92 3.8 86.7 1.0 CG b:ASP59 3.8 91.7 1.0 OD2 b:ASP386 3.9 93.3 1.0 CA b:ASP59 4.0 90.2 1.0 OD1 b:ASP90 4.1 89.7 1.0 PB b:ADP601 4.1 89.6 1.0 CB b:ASP59 4.2 91.7 1.0 N b:GLY91 4.3 86.2 1.0 O b:HOH701 4.4 74.3 1.0 OG1 b:THR93 4.5 85.5 1.0 N b:THR92 4.5 84.7 1.0 N b:GLY60 4.6 89.0 1.0 CA b:ASP90 4.7 87.7 1.0 OD2 b:ASP59 4.7 91.7 1.0 O b:GLY89 4.7 89.4 1.0 CE b:LYS164 4.7 92.5 1.0 O2B b:ADP601 4.7 94.1 1.0 CG b:ASP386 4.7 93.3 1.0 O b:ASN58 4.8 91.3 1.0 N b:THR93 4.8 84.8 1.0 O3A b:ADP601 4.8 2.8 1.0 C b:ASP59 4.9 90.2 1.0 C b:ASP90 5.0 87.7 1.0 N b:ASP59 5.0 90.2 1.0 CB b:THR92 5.0 86.7 1.0 CG b:ASP90 5.0 89.7 1.0

Aluminium binding site 4 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Al603 b:55.7 occ:1.00 AL B:AF3603 0.0 55.7 1.0 F3 B:AF3603 1.6 62.6 1.0 F2 B:AF3603 1.7 47.6 1.0 F1 B:AF3603 1.7 58.2 1.0 O1B B:ADP601 2.9 0.6 1.0 OD1 B:ASP59 3.2 90.9 1.0 O2B B:ADP601 3.5 0.1 1.0 OD1 B:ASP90 3.5 89.4 1.0 PB B:ADP601 3.6 0.6 1.0 NZ B:LYS164 3.6 89.6 1.0 OG1 B:THR92 3.6 87.5 1.0 CG B:ASP59 3.8 90.9 1.0 MG B:MG602 3.8 78.9 1.0 OD2 B:ASP386 3.9 91.6 1.0 CA B:ASP59 4.2 90.1 1.0 N B:GLY91 4.2 85.1 1.0 N B:THR92 4.2 85.0 1.0 CB B:ASP59 4.3 90.9 1.0 O3B B:ADP601 4.3 0.5 1.0 OG1 B:THR93 4.4 85.3 1.0 OD2 B:ASP59 4.5 90.9 1.0 N B:THR93 4.5 84.4 1.0 CE B:LYS164 4.5 89.6 1.0 N B:GLY60 4.6 89.8 1.0 CG B:ASP90 4.7 89.4 1.0 CG B:ASP386 4.8 91.6 1.0 CB B:THR92 4.8 87.5 1.0 CA B:GLY91 4.8 85.1 1.0 C B:GLY91 4.9 85.1 1.0 CA B:THR92 5.0 85.0 1.0 CB B:THR93 5.0 85.3 1.0 O3A B:ADP601 5.0 0.8 1.0 C B:ASP59 5.0 90.1 1.0 O2A B:ADP601 5.0 0.2 1.0 CA B:ASP90 5.0 87.5 1.0

Aluminium binding site 5 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ d:Al603 b:55.7 occ:1.00 AL d:AF3603 0.0 55.7 1.0 F3 d:AF3603 1.6 62.6 1.0 F2 d:AF3603 1.7 47.6 1.0 F1 d:AF3603 1.7 58.2 1.0 O1B d:ADP601 2.7 0.6 1.0 OD1 d:ASP60 3.4 95.0 1.0 O3B d:ADP601 3.5 0.5 1.0 OG1 d:THR93 3.5 90.9 1.0 PB d:ADP601 3.5 0.6 1.0 OD2 d:ASP396 3.8 0.3 1.0 OG1 d:THR94 3.8 89.7 1.0 CA d:ASP60 3.9 94.8 1.0 O3A d:ADP601 4.0 0.8 1.0 CG d:ASP60 4.0 95.0 1.0 NZ d:LYS161 4.1 97.4 1.0 MG d:MG602 4.3 78.9 1.0 CB d:ASP60 4.3 95.0 1.0 CE d:LYS161 4.4 97.4 1.0 N d:THR94 4.4 88.5 1.0 N d:GLY61 4.4 93.0 1.0 N d:THR93 4.5 88.7 1.0 CB d:THR94 4.6 89.7 1.0 CG d:ASP396 4.8 0.3 1.0 CB d:THR93 4.8 90.9 1.0 C d:ASP60 4.8 94.8 1.0 N d:ASP60 4.8 94.8 1.0 OD1 d:ASP91 4.8 95.9 1.0 O2A d:ADP601 4.8 0.0 1.0 N d:GLY92 4.8 89.8 1.0 OD2 d:ASP60 4.8 95.0 1.0 O2B d:ADP601 4.9 0.1 1.0 O d:ASN59 5.0 95.4 1.0 O d:HOH701 5.0 74.3 1.0

Aluminium binding site 6 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ D:Al603 b:55.7 occ:1.00 AL D:AF3603 0.0 55.7 1.0 F3 D:AF3603 1.6 62.6 1.0 F2 D:AF3603 1.7 47.6 1.0 F1 D:AF3603 1.7 58.2 1.0 O1B D:ADP601 2.5 0.6 1.0 OD1 D:ASP60 2.8 92.8 1.0 CA D:ASP60 3.0 91.6 1.0 N D:GLY61 3.1 90.9 1.0 O3B D:ADP601 3.2 0.5 1.0 PB D:ADP601 3.3 0.6 1.0 NZ D:LYS161 3.5 94.5 1.0 CE D:LYS161 3.5 94.5 1.0 CG D:ASP60 3.5 92.8 1.0 C D:ASP60 3.6 91.6 1.0 O D:ASN59 3.7 92.4 1.0 CB D:ASP60 3.7 92.8 1.0 N D:ASP60 4.0 91.6 1.0 CG2 D:THR93 4.0 90.1 1.0 CB D:THR94 4.1 87.5 1.0 CG2 D:THR94 4.2 87.5 1.0 C D:ASN59 4.2 92.4 1.0 OD2 D:ASP396 4.3 97.3 1.0 CA D:GLY61 4.4 90.9 1.0 O3A D:ADP601 4.4 0.8 1.0 O2B D:ADP601 4.5 0.1 1.0 N D:THR94 4.5 87.7 1.0 OD2 D:ASP60 4.6 92.8 1.0 O1A D:ADP601 4.7 0.0 1.0 O D:ASP60 4.8 91.6 1.0 CA D:THR94 4.9 87.7 1.0 CD D:LYS161 5.0 94.5 1.0

Aluminium binding site 7 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ e:Al603 b:55.7 occ:1.00 AL e:AF3603 0.0 55.7 1.0 F3 e:AF3603 1.6 62.6 1.0 F2 e:AF3603 1.7 47.6 1.0 F1 e:AF3603 1.7 58.2 1.0 O1B e:ADP601 2.6 0.5 1.0 OD1 e:ASP86 2.9 94.2 1.0 CG e:ASP86 3.5 94.2 1.0 OG1 e:THR119 3.7 91.7 1.0 PB e:ADP601 3.8 0.6 1.0 MG e:MG602 3.8 78.9 1.0 O3A e:ADP601 3.9 0.8 1.0 NZ e:LYS191 3.9 93.4 1.0 CB e:ASP86 4.0 94.2 1.0 CA e:ASP86 4.0 92.2 1.0 OD2 e:ASP86 4.1 94.2 1.0 O2B e:ADP601 4.2 0.1 1.0 OD2 e:ASP425 4.2 96.0 1.0 OG1 e:THR120 4.2 90.6 1.0 OD1 e:ASP117 4.4 95.6 1.0 CE e:LYS191 4.4 93.4 1.0 N e:THR119 4.6 91.1 1.0 N e:GLY87 4.7 91.7 1.0 N e:GLY118 4.7 92.3 1.0 N e:THR120 4.8 90.1 1.0 O e:HOH701 4.8 74.3 1.0 C e:ASP86 4.9 92.2 1.0 CB e:THR119 4.9 91.7 1.0

Aluminium binding site 8 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ E:Al603 b:55.7 occ:1.00 AL E:AF3603 0.0 55.7 1.0 F3 E:AF3603 1.6 62.6 1.0 F2 E:AF3603 1.7 47.6 1.0 F1 E:AF3603 1.7 58.2 1.0 O1B E:ADP601 2.7 0.1 1.0 OG1 E:THR119 3.3 92.7 1.0 OD1 E:ASP86 3.5 94.0 1.0 PB E:ADP601 3.8 0.6 1.0 O3A E:ADP601 3.9 0.8 1.0 MG E:MG602 4.0 78.9 1.0 CG E:ASP86 4.0 94.0 1.0 CE E:LYS191 4.0 93.5 1.0 O3B E:ADP601 4.1 0.5 1.0 NZ E:LYS191 4.2 93.5 1.0 OD2 E:ASP425 4.3 94.5 1.0 N E:THR119 4.4 92.1 1.0 CA E:ASP86 4.4 92.2 1.0 CB E:ASP86 4.5 94.0 1.0 CB E:THR119 4.5 92.7 1.0 CG2 E:THR120 4.6 93.4 1.0 OD2 E:ASP86 4.7 94.0 1.0 N E:THR120 4.8 91.7 1.0 N E:GLY118 4.8 93.2 1.0 OG1 E:THR120 4.9 93.4 1.0 CG2 E:THR119 4.9 92.7 1.0

Aluminium binding site 9 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 9 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ g:Al603 b:55.7 occ:1.00 AL g:AF3603 0.0 55.7 1.0 F3 g:AF3603 1.6 62.6 1.0 F2 g:AF3603 1.7 47.6 1.0 F1 g:AF3603 1.7 58.2 1.0 OD1 g:ASP60 3.0 97.9 1.0 O3A g:ADP601 3.3 0.8 1.0 OG1 g:THR93 3.5 94.7 1.0 MG g:MG602 3.6 78.9 1.0 O3B g:ADP601 3.7 0.5 1.0 OG1 g:THR94 3.9 94.2 1.0 CG g:ASP60 4.1 97.9 1.0 PB g:ADP601 4.2 0.6 1.0 N g:GLY61 4.2 96.0 1.0 PA g:ADP601 4.2 0.3 1.0 O g:HOH701 4.2 74.3 1.0 CA g:ASP60 4.3 96.5 1.0 O2A g:ADP601 4.3 0.2 1.0 O1A g:ADP601 4.4 0.0 1.0 N g:THR93 4.4 94.2 1.0 N g:THR94 4.5 93.3 1.0 N g:GLY92 4.6 95.4 1.0 O2B g:ADP601 4.6 0.1 1.0 CE g:LYS162 4.6 99.2 1.0 CB g:ASP60 4.6 97.9 1.0 OD2 g:ASP458 4.7 0.8 1.0 OD1 g:ASP91 4.7 0.4 1.0 CB g:THR93 4.7 94.7 1.0 CB g:THR94 4.8 94.2 1.0 NZ g:LYS162 4.8 99.2 1.0 C g:ASP60 4.8 96.5 1.0

Aluminium binding site 10 out of 14 in the Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 10 of Tric at 0.2 Mm Adp-Alfx, Conformation 1, 0.2-C1 within 5.0Å range: probe atom residue distance (Å) B Occ G:Al603 b:55.7 occ:1.00 AL G:AF3603 0.0 55.7 1.0 F3 G:AF3603 1.6 62.6 1.0 F2 G:AF3603 1.7 47.6 1.0 F1 G:AF3603 1.7 58.2 1.0 O3B G:ADP601 2.7 0.5 1.0 O1B G:ADP601 2.7 0.1 1.0 OD1 G:ASP60 2.7 96.0 1.0 PB G:ADP601 3.2 0.6 1.0 CG G:ASP60 3.2 96.0 1.0 OG1 G:THR93 3.5 94.7 1.0 O G:HOH701 3.6 74.3 1.0 OD2 G:ASP60 3.7 96.0 1.0 NZ G:LYS162 3.8 97.4 1.0 OD2 G:ASP458 3.9 99.1 1.0 CB G:ASP60 4.0 96.0 1.0 O3A G:ADP601 4.0 0.8 1.0 MG G:MG602 4.1 78.9 1.0 OG1 G:THR94 4.1 94.2 1.0 CA G:ASP60 4.2 95.5 1.0 CE G:LYS162 4.4 97.4 1.0 N G:THR93 4.4 93.8 1.0 O2B G:ADP601 4.5 0.6 1.0 N G:THR94 4.6 93.7 1.0 CG G:ASP458 4.6 99.1 1.0 N G:GLY92 4.6 94.6 1.0 CB G:THR93 4.7 94.7 1.0 OD1 G:ASP91 4.8 99.0 1.0 N G:GLY61 4.8 95.3 1.0 CB G:THR94 4.9 94.2 1.0 C G:ASP60 5.0 95.5 1.0

M.Jin, W.Han, C.Liu, Y.Zang, J.Li, F.Wang, Y.Wang, Y.Cong. An Ensemble of Cryo-Em Structures of Tric Reveal Its Conformational Landscape and Subunit Specificity. Proc.Natl.Acad.Sci.Usa V. 116 19513 2019.
ISSN: ESSN 1091-6490
PubMed: 31492816
DOI: 10.1073/PNAS.1903976116