Atomistry » Aluminium » PDB 6i4i-7jl2 » 6t66
Atomistry »
  Aluminium »
    PDB 6i4i-7jl2 »
      6t66 »

Aluminium in PDB 6t66: Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4

Enzymatic activity of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4

All present enzymatic activity of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4:
3.6.4.12;

Protein crystallography data

The structure of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4, PDB code: 6t66 was solved by P.Legrand, S.Quevillon-Cheruel, I.Li De La Sierra-Gallay, H.Walbott, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.63 / 3.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 118.978, 123.292, 263.493, 90, 90, 90
R / Rfree (%) 25.5 / 27.6

Other elements in 6t66:

The structure of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 also contains other interesting chemical elements:

Fluorine (F) 24 atoms
Magnesium (Mg) 6 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 (pdb code 6t66). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 6 binding sites of Aluminium where determined in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4, PDB code: 6t66:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6;

Aluminium binding site 1 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 1 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al503

b:175.6
occ:1.00
AL A:ALF503 0.0 175.6 1.0
F1 A:ALF503 1.8 175.6 1.0
F2 A:ALF503 1.8 175.2 1.0
F4 A:ALF503 1.8 176.0 1.0
F3 A:ALF503 1.8 175.5 1.0
O3B A:GDP501 2.0 151.9 1.0
OE1 A:GLU259 3.1 176.5 1.0
PB A:GDP501 3.2 152.1 1.0
O2B A:GDP501 3.5 151.4 1.0
MG A:MG502 3.8 63.7 1.0
NH1 B:ARG439 3.9 183.1 1.0
O3A A:GDP501 4.0 153.0 1.0
CD A:GLU259 4.0 184.8 1.0
OE2 A:GLU259 4.0 177.3 1.0
NZ A:LYS234 4.1 170.7 1.0
CE A:LYS234 4.3 164.3 1.0
O B:GLN407 4.3 149.3 1.0
NE B:ARG439 4.4 180.4 1.0
N A:SER231 4.4 144.5 1.0
O1B A:GDP501 4.4 152.4 1.0
CE1 A:TYR341 4.4 159.2 1.0
CZ B:ARG439 4.4 194.6 1.0
NZ B:LYS437 4.5 177.6 1.0
CA A:PRO230 4.6 145.4 1.0
CE B:LYS437 4.7 171.5 1.0
NE2 A:GLN381 4.7 185.1 1.0
CB A:PRO230 4.8 147.2 1.0
OH A:TYR341 4.9 166.0 1.0
CA B:GLN407 4.9 147.6 1.0
O B:GLU406 4.9 152.0 1.0

Aluminium binding site 2 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 2 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al503

b:160.6
occ:1.00
AL B:ALF503 0.0 160.6 1.0
F1 B:ALF503 1.8 160.2 1.0
F4 B:ALF503 1.8 161.0 1.0
F3 B:ALF503 1.8 160.5 1.0
F2 B:ALF503 1.8 160.8 1.0
O3B B:GDP501 2.0 146.2 1.0
OE1 B:GLU259 3.2 160.7 1.0
PB B:GDP501 3.2 146.1 1.0
O2B B:GDP501 3.5 145.8 1.0
MG B:MG502 3.9 52.1 1.0
NH1 C:ARG439 3.9 190.4 1.0
O3A B:GDP501 4.0 145.3 1.0
CD B:GLU259 4.0 171.8 1.0
OE2 B:GLU259 4.0 165.3 1.0
NZ B:LYS234 4.1 160.1 1.0
O C:GLN407 4.1 158.8 1.0
CE B:LYS234 4.3 151.9 1.0
N B:SER231 4.4 129.8 1.0
O1B B:GDP501 4.4 146.7 1.0
CE1 B:TYR341 4.4 144.8 1.0
CZ C:ARG439 4.5 202.7 1.0
NZ C:LYS437 4.6 196.7 1.0
NE C:ARG439 4.6 187.6 1.0
CA C:GLN407 4.6 156.9 1.0
CE C:LYS437 4.6 188.0 1.0
CA B:PRO230 4.7 130.6 1.0
O C:GLU406 4.7 161.3 1.0
NE2 B:GLN381 4.7 177.7 1.0
CB B:PRO230 4.8 132.3 1.0
C C:GLN407 4.8 159.3 1.0
OH B:TYR341 4.9 152.3 1.0

Aluminium binding site 3 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 3 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al503

b:161.9
occ:1.00
AL C:ALF503 0.0 161.9 1.0
F1 C:ALF503 1.8 161.8 1.0
F2 C:ALF503 1.8 161.8 1.0
F4 C:ALF503 1.8 161.8 1.0
F3 C:ALF503 1.8 162.0 1.0
O1B C:GDP501 2.0 142.9 1.0
OE1 C:GLU259 3.2 177.6 1.0
PB C:GDP501 3.2 142.3 1.0
O3B C:GDP501 3.5 142.2 1.0
NH1 D:ARG439 3.7 200.1 1.0
MG C:MG502 3.9 34.8 1.0
O3A C:GDP501 4.0 142.3 1.0
CD C:GLU259 4.0 186.5 1.0
OE2 C:GLU259 4.0 178.6 1.0
O D:GLN407 4.1 175.7 1.0
NZ C:LYS234 4.1 162.3 1.0
CE C:LYS234 4.3 155.6 1.0
CZ D:ARG439 4.4 212.2 1.0
N C:SER231 4.4 135.9 1.0
CE1 C:TYR341 4.4 156.3 1.0
O2B C:GDP501 4.4 142.2 1.0
NE D:ARG439 4.4 198.4 1.0
NZ D:LYS437 4.5 204.2 1.0
CA D:GLN407 4.6 173.3 1.0
CE D:LYS437 4.6 196.2 1.0
CA C:PRO230 4.7 137.3 1.0
O D:GLU406 4.7 176.9 1.0
NE2 C:GLN381 4.7 181.2 1.0
C D:GLN407 4.8 176.1 1.0
CB C:PRO230 4.8 139.2 1.0
OH C:TYR341 4.8 163.3 1.0

Aluminium binding site 4 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 4 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al503

b:272.6
occ:1.00
AL D:ALF503 0.0 272.6 1.0
F4 D:ALF503 1.8 272.7 1.0
F3 D:ALF503 1.8 272.6 1.0
F1 D:ALF503 1.8 271.5 1.0
F2 D:ALF503 1.8 272.9 1.0
O1B D:GDP501 2.1 220.4 1.0
OE1 D:GLU259 3.2 199.3 1.0
PB D:GDP501 3.2 220.2 1.0
O3B D:GDP501 3.5 220.8 1.0
MG D:MG502 3.9 74.6 1.0
O3A D:GDP501 4.0 219.1 1.0
CD D:GLU259 4.0 206.1 1.0
OE2 D:GLU259 4.0 200.4 1.0
NZ D:LYS234 4.1 205.2 1.0
CE D:LYS234 4.3 197.6 1.0
N D:SER231 4.4 177.3 1.0
O2B D:GDP501 4.4 220.2 1.0
CE1 D:TYR341 4.4 166.8 1.0
CA D:PRO230 4.7 177.1 1.0
NE2 D:GLN381 4.7 207.1 1.0
CB D:PRO230 4.8 178.9 1.0
OH D:TYR341 4.9 174.4 1.0

Aluminium binding site 5 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 5 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al503

b:218.5
occ:1.00
AL E:ALF503 0.0 218.5 1.0
F3 E:ALF503 1.8 218.6 1.0
F1 E:ALF503 1.8 218.1 1.0
F4 E:ALF503 1.8 218.4 1.0
F2 E:ALF503 1.8 218.7 1.0
O3B E:GDP501 2.0 187.7 1.0
OE1 E:GLU259 3.2 229.7 1.0
PB E:GDP501 3.2 187.7 1.0
O2B E:GDP501 3.5 187.7 1.0
MG E:MG502 3.9 74.6 1.0
O3A E:GDP501 4.0 187.0 1.0
CD E:GLU259 4.0 235.3 1.0
NH1 F:ARG439 4.0 255.4 1.0
OE2 E:GLU259 4.0 232.1 1.0
NZ E:LYS234 4.1 239.7 1.0
O F:GLN407 4.3 227.2 1.0
CE E:LYS234 4.3 230.6 1.0
N E:SER231 4.4 200.0 1.0
O1B E:GDP501 4.4 187.9 1.0
CE1 E:TYR341 4.4 229.9 1.0
CZ F:ARG439 4.6 267.0 1.0
NE F:ARG439 4.6 252.1 1.0
CA E:PRO230 4.7 201.9 1.0
NE2 E:GLN381 4.7 259.0 1.0
CB E:PRO230 4.8 203.7 1.0
OH E:TYR341 4.9 236.2 1.0
NZ F:LYS437 4.9 264.0 1.0
CA F:GLN407 4.9 225.0 1.0

Aluminium binding site 6 out of 6 in 6t66

Go back to Aluminium Binding Sites List in 6t66
Aluminium binding site 6 out of 6 in the Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Crystal Structure of the Vibrio Cholerae Replicative Helicase (Dnab) with Gdp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al503

b:287.8
occ:1.00
AL F:ALF503 0.0 287.8 1.0
F1 F:ALF503 1.8 287.7 1.0
F4 F:ALF503 1.8 288.0 1.0
F2 F:ALF503 1.8 287.2 1.0
F3 F:ALF503 1.8 287.9 1.0
O3B F:GDP501 2.0 216.0 1.0
OE1 F:GLU259 3.2 221.3 1.0
PB F:GDP501 3.2 215.3 1.0
O2B F:GDP501 3.5 215.6 1.0
MG F:MG502 3.9 92.1 1.0
O3A F:GDP501 4.0 214.3 1.0
CD F:GLU259 4.0 224.9 1.0
OE2 F:GLU259 4.0 219.5 1.0
NZ F:LYS234 4.1 233.4 1.0
CE F:LYS234 4.3 224.9 1.0
N F:SER231 4.4 199.5 1.0
O1B F:GDP501 4.4 215.1 1.0
CE1 F:TYR341 4.4 204.1 1.0
CA F:PRO230 4.7 200.3 1.0
NE2 F:GLN381 4.7 241.7 1.0
CB F:PRO230 4.8 202.2 1.0
OH F:TYR341 4.9 212.3 1.0

Reference:

S.Marsin, Y.Adam, C.Cargemel, J.Andreani, S.Baconnais, P.Legrand, I.Li De La Sierra-Gallay, A.Humbert, M.Aumont-Nicaise, C.Velours, F.Ochsenbein, D.Durand, E.Le Cam, H.Walbott, C.Possoz, S.Quevillon-Cheruel, J.-L.Ferat. Study of the Dnab:Dcia Interplay Reveals Insights Into the Primary Mode of Loading of the Bacterial Replicative Helicase To Be Published.
Page generated: Wed Jul 10 09:55:19 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy