Aluminium in PDB 7bwv: Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
Protein crystallography data
The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv
was solved by
S.Batra,
B.Prakash,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.63 /
2.35
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
48.699,
73.614,
156.754,
90,
90,
90
|
R / Rfree (%)
|
19.3 /
23.2
|
Other elements in 7bwv:
The structure of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
(pdb code 7bwv). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the
Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-, PDB code: 7bwv:
Jump to Aluminium binding site number:
1;
2;
Aluminium binding site 1 out
of 2 in 7bwv
Go back to
Aluminium Binding Sites List in 7bwv
Aluminium binding site 1 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al302
b:37.7
occ:1.00
|
AL
|
A:ALF302
|
0.0
|
37.7
|
1.0
|
F4
|
A:ALF302
|
1.6
|
41.9
|
1.0
|
F1
|
A:ALF302
|
1.6
|
33.5
|
1.0
|
F2
|
A:ALF302
|
1.6
|
39.6
|
1.0
|
F3
|
A:ALF302
|
1.6
|
33.1
|
1.0
|
O3B
|
A:GDP301
|
2.3
|
32.3
|
1.0
|
O
|
A:HOH439
|
2.4
|
28.1
|
1.0
|
PB
|
A:GDP301
|
3.4
|
31.3
|
1.0
|
MG
|
A:MG303
|
3.5
|
30.0
|
1.0
|
K
|
A:K304
|
3.6
|
35.6
|
1.0
|
O2B
|
A:GDP301
|
3.7
|
31.7
|
1.0
|
N
|
A:ASN11
|
3.8
|
38.1
|
1.0
|
N
|
A:GLY33
|
3.8
|
30.1
|
1.0
|
O
|
A:HOH465
|
3.9
|
30.5
|
1.0
|
N
|
A:VAL34
|
4.0
|
33.6
|
1.0
|
N
|
A:THR35
|
4.1
|
37.0
|
1.0
|
NZ
|
A:LYS14
|
4.2
|
29.0
|
1.0
|
O
|
A:HOH433
|
4.3
|
28.5
|
1.0
|
O1B
|
A:GDP301
|
4.3
|
32.1
|
1.0
|
N
|
A:GLY56
|
4.3
|
29.4
|
1.0
|
CA
|
A:PRO10
|
4.3
|
34.5
|
1.0
|
O
|
A:HOH425
|
4.4
|
31.2
|
1.0
|
CA
|
A:GLY33
|
4.4
|
31.3
|
1.0
|
CB
|
A:THR35
|
4.5
|
29.2
|
1.0
|
O3A
|
A:GDP301
|
4.5
|
42.1
|
1.0
|
OG1
|
A:THR35
|
4.6
|
30.4
|
1.0
|
C
|
A:PRO10
|
4.6
|
32.5
|
1.0
|
C
|
A:GLY33
|
4.6
|
33.9
|
1.0
|
CB
|
A:PRO10
|
4.6
|
28.3
|
1.0
|
O
|
A:THR35
|
4.7
|
28.0
|
1.0
|
CA
|
A:ASN11
|
4.7
|
41.1
|
1.0
|
CA
|
A:GLY56
|
4.8
|
33.1
|
1.0
|
CA
|
A:VAL34
|
4.8
|
40.2
|
1.0
|
C
|
A:PRO32
|
4.8
|
31.4
|
1.0
|
CA
|
A:PRO32
|
4.8
|
38.1
|
1.0
|
CB
|
A:VAL34
|
4.9
|
35.5
|
1.0
|
CA
|
A:THR35
|
4.9
|
31.3
|
1.0
|
C
|
A:VAL34
|
5.0
|
35.8
|
1.0
|
CE
|
A:LYS14
|
5.0
|
31.3
|
1.0
|
|
Aluminium binding site 2 out
of 2 in 7bwv
Go back to
Aluminium Binding Sites List in 7bwv
Aluminium binding site 2 out
of 2 in the Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4-
 Mono view
 Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Al302
b:31.9
occ:1.00
|
AL
|
B:ALF302
|
0.0
|
31.9
|
1.0
|
F3
|
B:ALF302
|
1.6
|
33.9
|
1.0
|
F2
|
B:ALF302
|
1.6
|
31.6
|
1.0
|
F4
|
B:ALF302
|
1.6
|
33.1
|
1.0
|
F1
|
B:ALF302
|
1.6
|
32.3
|
1.0
|
O1B
|
B:GDP301
|
2.2
|
28.9
|
1.0
|
O
|
B:HOH456
|
2.3
|
26.8
|
1.0
|
PB
|
B:GDP301
|
3.3
|
27.6
|
1.0
|
O3B
|
B:GDP301
|
3.5
|
28.0
|
1.0
|
MG
|
B:MG303
|
3.5
|
27.8
|
1.0
|
K
|
B:K304
|
3.7
|
32.7
|
1.0
|
N
|
B:ASN11
|
3.9
|
26.1
|
1.0
|
O
|
B:HOH479
|
3.9
|
29.8
|
1.0
|
N
|
B:GLY33
|
3.9
|
28.7
|
1.0
|
N
|
B:VAL34
|
4.0
|
29.8
|
1.0
|
N
|
B:THR35
|
4.1
|
31.9
|
1.0
|
O
|
B:HOH404
|
4.1
|
24.0
|
1.0
|
NZ
|
B:LYS14
|
4.2
|
28.4
|
1.0
|
N
|
B:GLY56
|
4.2
|
31.6
|
1.0
|
O2B
|
B:GDP301
|
4.3
|
36.0
|
1.0
|
CA
|
B:PRO10
|
4.3
|
30.4
|
1.0
|
CB
|
B:THR35
|
4.4
|
25.9
|
1.0
|
O
|
B:HOH426
|
4.5
|
26.4
|
1.0
|
OG1
|
B:THR35
|
4.5
|
28.5
|
1.0
|
CA
|
B:GLY33
|
4.5
|
28.1
|
1.0
|
O3A
|
B:GDP301
|
4.6
|
31.1
|
1.0
|
C
|
B:PRO10
|
4.7
|
31.7
|
1.0
|
C
|
B:GLY33
|
4.7
|
33.6
|
1.0
|
O
|
B:THR35
|
4.7
|
33.1
|
1.0
|
CB
|
B:PRO10
|
4.7
|
25.8
|
1.0
|
CA
|
B:GLY56
|
4.7
|
31.7
|
1.0
|
CA
|
B:ASN11
|
4.7
|
27.4
|
1.0
|
CA
|
B:THR35
|
4.8
|
32.3
|
1.0
|
CE
|
B:LYS14
|
4.8
|
27.8
|
1.0
|
CA
|
B:VAL34
|
4.8
|
32.3
|
1.0
|
CB
|
B:VAL34
|
4.9
|
30.5
|
1.0
|
C
|
B:PRO32
|
4.9
|
34.7
|
1.0
|
CA
|
B:PRO32
|
4.9
|
28.2
|
1.0
|
C
|
B:VAL34
|
5.0
|
33.2
|
1.0
|
O1A
|
B:GDP301
|
5.0
|
28.3
|
1.0
|
|
Reference:
S.Batra,
B.Prakash.
Crystal Structure of S. Thermophilus Nfeob E67A Bound to Gdp.ALF4- To Be Published.
Page generated: Wed Jul 10 09:57:46 2024
|