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Aluminium in PDB 7e5a: Interferon-Inducible Anti-Viral Protein R356A

Protein crystallography data

The structure of Interferon-Inducible Anti-Viral Protein R356A, PDB code: 7e5a was solved by W.Cui, W.Wang, C.Chen, B.Slater, Y.Xiong, X.Y.Ji, H.T.Yang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.48 / 2.50
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 114.26, 114.26, 168.49, 90, 90, 120
R / Rfree (%) 21.1 / 25

Other elements in 7e5a:

The structure of Interferon-Inducible Anti-Viral Protein R356A also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Fluorine (F) 6 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Interferon-Inducible Anti-Viral Protein R356A (pdb code 7e5a). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Interferon-Inducible Anti-Viral Protein R356A, PDB code: 7e5a:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 7e5a

Go back to Aluminium Binding Sites List in 7e5a
Aluminium binding site 1 out of 2 in the Interferon-Inducible Anti-Viral Protein R356A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Interferon-Inducible Anti-Viral Protein R356A within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al502

b:67.9
occ:1.00
AL A:AF3502 0.0 67.9 1.0
F2 A:AF3502 1.7 56.5 1.0
F1 A:AF3502 1.7 59.4 1.0
F3 A:AF3502 1.7 63.7 1.0
O1B A:GDP501 2.3 59.0 1.0
PB A:GDP501 3.4 57.1 1.0
O2B A:GDP501 3.6 56.4 1.0
NH1 A:ARG48 3.8 58.4 1.0
NZ A:LYS51 3.8 49.7 1.0
N A:THR75 3.8 57.0 1.0
N A:GLY100 3.9 55.8 1.0
O3B A:GDP501 3.9 57.5 1.0
O A:HOH619 4.0 54.3 1.0
OG1 A:THR75 4.0 56.3 1.0
N A:HIS74 4.0 57.5 1.0
CB A:TYR47 4.1 55.8 1.0
N A:ARG48 4.1 58.7 1.0
MG A:MG503 4.1 58.6 1.0
CB A:THR75 4.1 60.7 1.0
CA A:TYR47 4.3 57.5 1.0
CA A:GLY100 4.3 53.6 1.0
O A:THR75 4.4 61.6 1.0
CA A:THR75 4.5 55.5 1.0
C A:HIS74 4.7 57.7 1.0
CA A:HIS74 4.7 59.5 1.0
CE A:LYS51 4.7 52.0 1.0
C A:TYR47 4.7 58.7 1.0
CD A:ARG48 4.7 62.6 1.0
O3A A:GDP501 4.8 64.8 1.0
CB A:HIS74 4.8 61.3 1.0
CA A:SER73 4.9 58.0 1.0
O A:THR98 4.9 60.6 1.0
C A:GLU99 4.9 55.4 1.0
C A:THR75 4.9 61.8 1.0
CB A:SER73 5.0 52.8 1.0
C A:SER73 5.0 58.3 1.0
CZ A:ARG48 5.0 60.7 1.0

Aluminium binding site 2 out of 2 in 7e5a

Go back to Aluminium Binding Sites List in 7e5a
Aluminium binding site 2 out of 2 in the Interferon-Inducible Anti-Viral Protein R356A


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Interferon-Inducible Anti-Viral Protein R356A within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al502

b:66.4
occ:1.00
AL B:AF3502 0.0 66.4 1.0
F2 B:AF3502 1.7 53.6 1.0
F1 B:AF3502 1.7 53.2 1.0
F3 B:AF3502 1.7 52.6 1.0
O3B B:GDP501 2.4 40.6 1.0
PB B:GDP501 3.6 46.7 1.0
N B:GLY100 3.9 51.6 1.0
CB B:TYR47 3.9 53.7 1.0
O B:HOH628 3.9 50.4 1.0
NZ B:LYS51 3.9 43.0 1.0
N B:ARG48 3.9 52.7 1.0
MG B:MG503 4.0 60.5 1.0
O2B B:GDP501 4.0 49.1 1.0
NH1 B:ARG48 4.0 44.1 1.0
CA B:TYR47 4.0 53.3 1.0
N B:THR75 4.1 46.4 1.0
O1B B:GDP501 4.1 49.0 1.0
N B:HIS74 4.1 46.5 1.0
CA B:GLY100 4.2 50.0 1.0
CB B:THR75 4.3 49.4 1.0
OG1 B:THR75 4.4 49.5 1.0
O B:THR75 4.4 56.6 1.0
C B:TYR47 4.6 55.2 1.0
CA B:THR75 4.7 49.0 1.0
CD B:ARG48 4.7 54.4 1.0
CE B:LYS51 4.8 47.6 1.0
CA B:SER73 4.8 47.4 1.0
CB B:SER73 4.8 53.1 1.0
C B:HIS74 4.8 48.6 1.0
CA B:HIS74 4.9 48.5 1.0
O3A B:GDP501 4.9 64.9 1.0
CA B:ARG48 4.9 54.3 1.0
C B:GLU99 4.9 54.7 1.0
O B:THR98 5.0 47.7 1.0

Reference:

W.Cui, E.Braun, W.Wang, J.Tang, Y.Zheng, B.Slater, N.Li, C.Chen, Q.Liu, B.Wang, X.Li, Y.Duan, Y.Xiao, R.Ti, D.Hotter, X.Ji, L.Zhang, J.Cui, Y.Xiong, D.Sauter, Z.Wang, F.Kirchhoff, H.Yang. Structural Basis For Gtp-Induced Dimerization and Antiviral Function of Guanylate-Binding Proteins. Proc.Natl.Acad.Sci.Usa V. 118 2021.
ISSN: ESSN 1091-6490
PubMed: 33876762
DOI: 10.1073/PNAS.2022269118
Page generated: Wed Jul 10 09:58:24 2024

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