Aluminium in PDB 7jl3: Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
Enzymatic activity of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
All present enzymatic activity of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer):
2.3.2.27;
3.6.4.13;
Other elements in 7jl3:
The structure of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer) also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
(pdb code 7jl3). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 3 binding sites of Aluminium where determined in the
Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer), PDB code: 7jl3:
Jump to Aluminium binding site number:
1;
2;
3;
Aluminium binding site 1 out
of 3 in 7jl3
Go back to
Aluminium Binding Sites List in 7jl3
Aluminium binding site 1 out
of 3 in the Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
 Mono view
 Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al2002
b:82.8
occ:1.00
|
AL
|
A:ALF2002
|
0.0
|
82.8
|
1.0
|
F1
|
A:ALF2002
|
1.8
|
82.8
|
1.0
|
F4
|
A:ALF2002
|
1.8
|
82.8
|
1.0
|
F3
|
A:ALF2002
|
1.8
|
82.8
|
1.0
|
F2
|
A:ALF2002
|
1.8
|
82.8
|
1.0
|
O1B
|
A:ADP2001
|
2.5
|
82.8
|
1.0
|
O2B
|
A:ADP2001
|
2.5
|
82.8
|
1.0
|
MG
|
A:MG2003
|
2.9
|
82.8
|
1.0
|
PB
|
A:ADP2001
|
3.0
|
82.8
|
1.0
|
NH2
|
A:ARG732
|
3.6
|
82.8
|
1.0
|
NH1
|
A:ARG730
|
3.7
|
82.8
|
1.0
|
OE2
|
A:GLU373
|
3.7
|
46.6
|
1.0
|
O3A
|
A:ADP2001
|
3.9
|
82.8
|
1.0
|
CA
|
A:GLY703
|
4.1
|
82.8
|
1.0
|
O3B
|
A:ADP2001
|
4.2
|
82.8
|
1.0
|
OE1
|
A:GLN726
|
4.4
|
82.8
|
1.0
|
N
|
A:GLY703
|
4.4
|
82.8
|
1.0
|
O1A
|
A:ADP2001
|
4.5
|
82.8
|
1.0
|
O
|
A:GLU702
|
4.5
|
82.8
|
1.0
|
C
|
A:GLU702
|
4.5
|
82.8
|
1.0
|
NZ
|
A:LYS270
|
4.6
|
82.8
|
1.0
|
CD
|
A:GLU373
|
4.8
|
46.6
|
1.0
|
CZ
|
A:ARG732
|
4.8
|
82.8
|
1.0
|
PA
|
A:ADP2001
|
4.8
|
82.8
|
1.0
|
CZ
|
A:ARG730
|
4.9
|
82.8
|
1.0
|
NE2
|
A:GLN726
|
5.0
|
82.8
|
1.0
|
|
Aluminium binding site 2 out
of 3 in 7jl3
Go back to
Aluminium Binding Sites List in 7jl3
Aluminium binding site 2 out
of 3 in the Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
 Mono view
 Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al2002
b:82.8
occ:1.00
|
AL
|
C:ALF2002
|
0.0
|
82.8
|
1.0
|
F1
|
C:ALF2002
|
1.8
|
82.8
|
1.0
|
F4
|
C:ALF2002
|
1.8
|
82.8
|
1.0
|
F3
|
C:ALF2002
|
1.8
|
82.8
|
1.0
|
F2
|
C:ALF2002
|
1.8
|
82.8
|
1.0
|
O1B
|
C:ADP2001
|
2.5
|
82.8
|
1.0
|
O2B
|
C:ADP2001
|
2.5
|
82.8
|
1.0
|
MG
|
C:MG2003
|
2.9
|
82.8
|
1.0
|
PB
|
C:ADP2001
|
3.0
|
82.8
|
1.0
|
NH2
|
C:ARG732
|
3.6
|
82.8
|
1.0
|
NH1
|
C:ARG730
|
3.7
|
82.8
|
1.0
|
OE2
|
C:GLU373
|
3.7
|
47.9
|
1.0
|
O3A
|
C:ADP2001
|
3.9
|
82.8
|
1.0
|
CA
|
C:GLY703
|
4.1
|
82.8
|
1.0
|
O3B
|
C:ADP2001
|
4.2
|
82.8
|
1.0
|
OE1
|
C:GLN726
|
4.4
|
82.8
|
1.0
|
N
|
C:GLY703
|
4.4
|
82.8
|
1.0
|
O1A
|
C:ADP2001
|
4.5
|
82.8
|
1.0
|
O
|
C:GLU702
|
4.5
|
82.8
|
1.0
|
C
|
C:GLU702
|
4.5
|
82.8
|
1.0
|
NZ
|
C:LYS270
|
4.6
|
82.8
|
1.0
|
CD
|
C:GLU373
|
4.8
|
47.9
|
1.0
|
CZ
|
C:ARG732
|
4.8
|
82.8
|
1.0
|
PA
|
C:ADP2001
|
4.8
|
82.8
|
1.0
|
CZ
|
C:ARG730
|
4.9
|
82.8
|
1.0
|
NE2
|
C:GLN726
|
5.0
|
82.8
|
1.0
|
|
Aluminium binding site 3 out
of 3 in 7jl3
Go back to
Aluminium Binding Sites List in 7jl3
Aluminium binding site 3 out
of 3 in the Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer)
 Mono view
 Stereo pair view
|
A full contact list of Aluminium with other atoms in the Al binding
site number 3 of Cryo-Em Structure of Rig-I:Dsrna Filament in Complex with Riplet Pryspry Domain (Trimer) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Al2002
b:82.8
occ:1.00
|
AL
|
E:ALF2002
|
0.0
|
82.8
|
1.0
|
F1
|
E:ALF2002
|
1.8
|
82.8
|
1.0
|
F4
|
E:ALF2002
|
1.8
|
82.8
|
1.0
|
F3
|
E:ALF2002
|
1.8
|
82.8
|
1.0
|
F2
|
E:ALF2002
|
1.8
|
82.8
|
1.0
|
O1B
|
E:ADP2001
|
2.5
|
82.8
|
1.0
|
O2B
|
E:ADP2001
|
2.5
|
82.8
|
1.0
|
MG
|
E:MG2003
|
2.9
|
82.8
|
1.0
|
PB
|
E:ADP2001
|
3.0
|
82.8
|
1.0
|
NH2
|
E:ARG732
|
3.6
|
82.8
|
1.0
|
NH1
|
E:ARG730
|
3.7
|
82.8
|
1.0
|
OE2
|
E:GLU373
|
3.7
|
43.6
|
1.0
|
O3A
|
E:ADP2001
|
3.9
|
82.8
|
1.0
|
CA
|
E:GLY703
|
4.1
|
82.8
|
1.0
|
O3B
|
E:ADP2001
|
4.2
|
82.8
|
1.0
|
OE1
|
E:GLN726
|
4.4
|
82.8
|
1.0
|
N
|
E:GLY703
|
4.4
|
82.8
|
1.0
|
O1A
|
E:ADP2001
|
4.5
|
82.8
|
1.0
|
O
|
E:GLU702
|
4.5
|
82.8
|
1.0
|
C
|
E:GLU702
|
4.5
|
82.8
|
1.0
|
NZ
|
E:LYS270
|
4.6
|
82.8
|
1.0
|
CD
|
E:GLU373
|
4.8
|
43.6
|
1.0
|
CZ
|
E:ARG732
|
4.8
|
82.8
|
1.0
|
PA
|
E:ADP2001
|
4.8
|
82.8
|
1.0
|
CZ
|
E:ARG730
|
4.9
|
82.8
|
1.0
|
NE2
|
E:GLN726
|
5.0
|
82.8
|
1.0
|
|
Reference:
K.Kato,
S.Ahmad,
Z.Zhu,
J.M.Young,
X.Mu,
S.Park,
H.S.Malik,
S.Hur.
Structural Analysis of Rig-I-Like Receptors Reveals Ancient Rules of Engagement Between Diverse Rna Helicases and Trim Ubiquitin Ligases Mol.Cell 2020.
ISSN: ISSN 1097-2765
Page generated: Sat Dec 12 01:35:18 2020
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