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Aluminium in PDB 7nvo: Human Tric Complex in Open State with Nanobody Bound

Other elements in 7nvo:

The structure of Human Tric Complex in Open State with Nanobody Bound also contains other interesting chemical elements:

Magnesium (Mg) 16 atoms
Fluorine (F) 36 atoms

Aluminium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Aluminium atom in the Human Tric Complex in Open State with Nanobody Bound (pdb code 7nvo). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 12 binding sites of Aluminium where determined in the Human Tric Complex in Open State with Nanobody Bound, PDB code: 7nvo:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Aluminium binding site 1 out of 12 in 7nvo

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Aluminium binding site 1 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Al603

b:55.7
occ:1.00
 AL H:AF3603 0.0 55.7 1.0
F3 H:AF3603 1.6 62.6 1.0
F1 H:AF3603 1.6 58.2 1.0
F2 H:AF3603 1.6 47.6 1.0
O3B H:ADP601 2.5 194.1 1.0
O1B H:ADP601 2.6 161.5 1.0
PB H:ADP601 2.8 189.6 1.0
O3A H:ADP601 3.1 202.8 1.0
MG H:MG602 3.1 30.0 1.0
CG2 H:THR95 3.6 57.2 1.0
O2A H:ADP601 3.7 177.2 1.0
PA H:ADP601 4.0 210.3 1.0
CG2 H:THR94 4.1 59.6 1.0
OD1 H:ASP61 4.2 65.1 1.0
O2B H:ADP601 4.3 179.6 1.0
O H:HOH701 4.4 30.0 1.0
N H:THR95 4.4 57.2 1.0
N H:THR94 4.4 59.6 1.0
N H:GLY62 4.4 63.5 1.0
N H:GLY93 4.5 61.8 1.0
CB H:THR95 4.6 57.2 1.0
OD1 H:ASP92 4.8 64.3 1.0
CG H:ASP61 4.9 65.1 1.0
O1A H:ADP601 5.0 200.0 1.0

Aluminium binding site 2 out of 12 in 7nvo

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Aluminium binding site 2 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:Al603

b:55.7
occ:1.00
 AL Q:AF3603 0.0 55.7 1.0
F1 Q:AF3603 1.6 58.2 1.0
F2 Q:AF3603 1.6 47.6 1.0
F3 Q:AF3603 1.6 62.6 1.0
O3B Q:ADP601 2.9 194.1 1.0
O3A Q:ADP601 3.5 202.8 1.0
MG Q:MG602 3.6 30.0 1.0
OD1 Q:ASP99 3.6 61.8 1.0
PB Q:ADP601 3.6 189.6 1.0
O1B Q:ADP601 3.8 161.5 1.0
O1A Q:ADP601 4.0 200.0 1.0
OD2 Q:ASP394 4.1 70.5 1.0
CB Q:THR101 4.2 58.2 1.0
PA Q:ADP601 4.3 210.3 1.0
N Q:THR101 4.4 58.2 1.0
O Q:HOH701 4.5 30.0 1.0
N Q:ASN102 4.6 56.3 1.0
OD1 Q:ASP68 4.7 62.7 1.0
OG1 Q:THR101 4.8 58.2 1.0
CA Q:THR101 4.8 58.2 1.0
CG Q:ASP99 4.9 61.8 1.0
CG Q:ASP394 4.9 70.5 1.0
N Q:GLY100 4.9 59.8 1.0
O2A Q:ADP601 4.9 177.2 1.0
OD1 Q:ASN102 5.0 56.3 1.0

Aluminium binding site 3 out of 12 in 7nvo

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Aluminium binding site 3 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
Z:Al603

b:55.7
occ:1.00
 AL Z:AF3603 0.0 55.7 1.0
F3 Z:AF3603 1.6 62.6 1.0
F1 Z:AF3603 1.6 58.2 1.0
F2 Z:AF3603 1.6 47.6 1.0
O1B Z:ADP601 2.5 194.1 1.0
OD1 Z:ASP90 2.6 63.9 1.0
OD2 Z:ASP90 2.8 63.9 1.0
CG Z:ASP90 3.1 63.9 1.0
PB Z:ADP601 3.4 189.6 1.0
O3A Z:ADP601 3.4 202.8 1.0
O Z:THR92 3.5 58.7 1.0
O3B Z:ADP601 3.8 161.5 1.0
MG Z:MG602 3.8 30.0 1.0
N Z:GLY60 3.8 61.2 1.0
CE Z:LYS159 3.9 64.3 1.0
OG1 Z:THR92 3.9 58.7 1.0
C Z:THR92 4.2 58.7 1.0
OG1 Z:THR93 4.3 58.2 1.0
NZ Z:LYS159 4.3 64.3 1.0
CB Z:ASP59 4.4 62.5 1.0
CB Z:THR93 4.4 58.2 1.0
CA Z:ASP59 4.5 62.5 1.0
N Z:THR92 4.5 58.7 1.0
CB Z:ASP90 4.5 63.9 1.0
CA Z:GLY60 4.6 61.2 1.0
C Z:ASP59 4.7 62.5 1.0
PA Z:ADP601 4.7 210.3 1.0
O1A Z:ADP601 4.7 177.2 1.0
O2B Z:ADP601 4.8 179.6 1.0
CA Z:THR92 4.8 58.7 1.0
CB Z:THR92 5.0 58.7 1.0

Aluminium binding site 4 out of 12 in 7nvo

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Aluminium binding site 4 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Al603

b:55.7
occ:1.00
 AL G:AF3603 0.0 55.7 1.0
F1 G:AF3603 1.6 58.2 1.0
F2 G:AF3603 1.6 47.6 1.0
F3 G:AF3603 1.6 62.6 1.0
O3B G:ADP601 2.7 194.1 1.0
MG G:MG602 3.4 30.0 1.0
OD1 G:ASP93 3.5 63.9 1.0
CG2 G:THR95 3.6 63.1 1.0
O3A G:ADP601 3.8 202.8 1.0
PB G:ADP601 3.9 189.6 1.0
N G:GLY94 4.5 62.3 1.0
O G:GLY92 4.5 66.0 1.0
CA G:ASP93 4.5 63.9 1.0
O2A G:ADP601 4.6 200.0 1.0
N G:THR95 4.6 63.1 1.0
CG G:ASP93 4.7 63.9 1.0
CG2 G:THR96 4.7 59.4 1.0
O1B G:ADP601 4.8 161.5 1.0
PA G:ADP601 4.8 210.3 1.0
C G:ASP93 4.9 63.9 1.0
CB G:THR95 4.9 63.1 1.0
O2B G:ADP601 4.9 179.6 1.0
N G:THR96 5.0 59.4 1.0

Aluminium binding site 5 out of 12 in 7nvo

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Aluminium binding site 5 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Al603

b:55.7
occ:1.00
 AL A:AF3603 0.0 55.7 1.0
F3 A:AF3603 1.6 62.6 1.0
F2 A:AF3603 1.6 47.6 1.0
F1 A:AF3603 1.6 58.2 1.0
O3B A:ADP601 2.5 194.1 1.0
CG2 A:THR91 3.3 62.6 1.0
O3A A:ADP601 3.5 202.8 1.0
PB A:ADP601 3.5 189.6 1.0
OD1 A:ASP57 3.9 69.6 1.0
CG2 A:THR90 4.1 64.0 1.0
O1B A:ADP601 4.1 161.5 1.0
MG A:MG602 4.2 30.0 1.0
CB A:THR91 4.2 62.6 1.0
CB A:ALA59 4.3 68.6 1.0
N A:ALA59 4.3 68.6 1.0
N A:THR91 4.4 62.6 1.0
O1A A:ADP601 4.4 177.2 1.0
CG A:ASP57 4.5 69.6 1.0
PA A:ADP601 4.6 210.3 1.0
OD1 A:ASP88 4.6 30.0 1.0
N A:THR90 4.7 64.0 1.0
CA A:ALA59 4.8 68.6 1.0
N A:GLY58 4.8 68.3 1.0
O2B A:ADP601 4.8 179.6 1.0
N A:GLY89 4.8 30.0 1.0
CA A:ASP57 4.9 69.6 1.0
C A:ASP57 4.9 69.6 1.0
CA A:THR91 4.9 62.6 1.0
OD2 A:ASP57 5.0 69.6 1.0

Aluminium binding site 6 out of 12 in 7nvo

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Aluminium binding site 6 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al603

b:55.7
occ:1.00
 AL B:AF3603 0.0 55.7 1.0
F2 B:AF3603 1.6 47.6 1.0
F1 B:AF3603 1.6 58.2 1.0
F3 B:AF3603 1.6 62.6 1.0
O2B B:ADP601 2.5 194.1 1.0
O3A B:ADP601 2.7 202.8 1.0
PB B:ADP601 3.1 189.6 1.0
OD1 B:ASP97 3.6 73.9 1.0
O3B B:ADP601 3.6 161.5 1.0
PA B:ADP601 3.8 210.3 1.0
MG B:MG602 3.8 30.0 1.0
O2A B:ADP601 3.8 177.2 1.0
OG1 B:THR100 4.2 63.5 1.0
O1A B:ADP601 4.3 200.0 1.0
O1B B:ADP601 4.4 179.6 1.0
N B:THR99 4.6 66.8 1.0
CG B:ASP97 4.6 73.9 1.0
OD1 B:ASP66 4.7 69.7 1.0
N B:GLY98 4.7 68.6 1.0
N B:THR100 4.7 63.5 1.0
CB B:THR99 4.8 66.8 1.0
CB B:THR100 4.9 63.5 1.0
N B:GLY67 4.9 67.2 1.0

Aluminium binding site 7 out of 12 in 7nvo

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Aluminium binding site 7 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
h:Al603

b:55.7
occ:1.00
 AL h:AF3603 0.0 55.7 1.0
F3 h:AF3603 1.6 62.6 1.0
F2 h:AF3603 1.6 47.6 1.0
F1 h:AF3603 1.6 58.2 1.0
O3B h:ADP601 2.5 194.1 1.0
O1B h:ADP601 2.6 161.5 1.0
PB h:ADP601 2.8 189.6 1.0
MG h:MG602 3.1 30.0 1.0
O3A h:ADP601 3.1 202.8 1.0
CG2 h:THR95 3.6 57.2 1.0
O2A h:ADP601 3.7 177.2 1.0
PA h:ADP601 4.0 210.3 1.0
CG2 h:THR94 4.1 59.6 1.0
OD1 h:ASP61 4.2 65.1 1.0
O h:HOH701 4.3 30.0 1.0
O2B h:ADP601 4.3 179.6 1.0
N h:THR95 4.4 57.2 1.0
N h:THR94 4.4 59.6 1.0
N h:GLY62 4.4 63.5 1.0
N h:GLY93 4.5 61.8 1.0
CB h:THR95 4.6 57.2 1.0
OD1 h:ASP92 4.8 64.3 1.0
CG h:ASP61 4.9 65.1 1.0
O1A h:ADP601 5.0 200.0 1.0

Aluminium binding site 8 out of 12 in 7nvo

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Aluminium binding site 8 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
q:Al603

b:55.7
occ:1.00
 AL q:AF3603 0.0 55.7 1.0
F1 q:AF3603 1.6 58.2 1.0
F2 q:AF3603 1.6 47.6 1.0
F3 q:AF3603 1.6 62.6 1.0
O1B q:ADP601 2.5 194.1 1.0
O3A q:ADP601 3.5 202.8 1.0
PB q:ADP601 3.6 189.6 1.0
MG q:MG602 3.6 30.0 1.0
OD1 q:ASP99 3.6 61.8 1.0
O1A q:ADP601 4.0 200.0 1.0
OD2 q:ASP394 4.1 70.5 1.0
CB q:THR101 4.2 58.2 1.0
PA q:ADP601 4.3 210.3 1.0
N q:THR101 4.4 58.2 1.0
O3B q:ADP601 4.5 161.5 1.0
O q:HOH701 4.6 30.0 1.0
N q:ASN102 4.6 56.3 1.0
O2B q:ADP601 4.7 179.6 1.0
OD1 q:ASP68 4.7 62.7 1.0
O2A q:ADP601 4.8 177.2 1.0
OG1 q:THR101 4.8 58.2 1.0
CA q:THR101 4.8 58.2 1.0
CG q:ASP99 4.9 61.8 1.0
CG q:ASP394 4.9 70.5 1.0
N q:GLY100 4.9 59.8 1.0
OD1 q:ASN102 5.0 56.3 1.0

Aluminium binding site 9 out of 12 in 7nvo

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Aluminium binding site 9 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 9 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
z:Al603

b:55.7
occ:1.00
 AL z:AF3603 0.0 55.7 1.0
F3 z:AF3603 1.6 62.6 1.0
F2 z:AF3603 1.6 47.6 1.0
F1 z:AF3603 1.6 58.2 1.0
O1B z:ADP601 2.5 194.1 1.0
OD1 z:ASP90 2.6 63.9 1.0
OD2 z:ASP90 2.8 63.9 1.0
CG z:ASP90 3.1 63.9 1.0
PB z:ADP601 3.4 189.6 1.0
O3A z:ADP601 3.4 202.8 1.0
O z:THR92 3.5 58.7 1.0
O3B z:ADP601 3.8 161.5 1.0
MG z:MG602 3.8 30.0 1.0
N z:GLY60 3.8 61.2 1.0
CE z:LYS159 3.9 64.3 1.0
OG1 z:THR92 3.9 58.7 1.0
C z:THR92 4.2 58.7 1.0
OG1 z:THR93 4.3 58.2 1.0
NZ z:LYS159 4.3 64.3 1.0
CB z:ASP59 4.4 62.5 1.0
CB z:THR93 4.4 58.2 1.0
CA z:ASP59 4.5 62.5 1.0
N z:THR92 4.5 58.7 1.0
CB z:ASP90 4.5 63.9 1.0
CA z:GLY60 4.6 61.2 1.0
C z:ASP59 4.7 62.5 1.0
PA z:ADP601 4.7 210.3 1.0
O1A z:ADP601 4.7 177.2 1.0
O2B z:ADP601 4.8 179.6 1.0
CA z:THR92 4.8 58.7 1.0
CB z:THR92 5.0 58.7 1.0

Aluminium binding site 10 out of 12 in 7nvo

Go back to Aluminium Binding Sites List in 7nvo
Aluminium binding site 10 out of 12 in the Human Tric Complex in Open State with Nanobody Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 10 of Human Tric Complex in Open State with Nanobody Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
g:Al603

b:55.7
occ:1.00
 AL g:AF3603 0.0 55.7 1.0
F1 g:AF3603 1.6 58.2 1.0
F3 g:AF3603 1.6 62.6 1.0
F2 g:AF3603 1.6 47.6 1.0
O3B g:ADP601 2.8 194.1 1.0
MG g:MG602 3.4 30.0 1.0
OD1 g:ASP93 3.5 63.9 1.0
CG2 g:THR95 3.6 63.1 1.0
O3A g:ADP601 3.8 202.8 1.0
PB g:ADP601 3.9 189.6 1.0
N g:GLY94 4.5 62.3 1.0
O2A g:ADP601 4.5 200.0 1.0
O g:GLY92 4.5 66.0 1.0
CA g:ASP93 4.5 63.9 1.0
N g:THR95 4.6 63.1 1.0
CG g:ASP93 4.7 63.9 1.0
CG2 g:THR96 4.7 59.4 1.0
O1B g:ADP601 4.7 161.5 1.0
PA g:ADP601 4.8 210.3 1.0
C g:ASP93 4.9 63.9 1.0
CB g:THR95 4.9 63.1 1.0
N g:THR96 5.0 59.4 1.0

Reference:

J.J.Kelly, D.Tranter, E.Pardon, G.Chi, H.Kramer, L.Happonen, K.M.Knee, J.M.Janz, J.Steyaert, C.Bulawa, V.O.Paavilainen, J.T.Huiskonen, W.W.Yue. Snapshots of Actin and Tubulin Folding Inside the Tric Chaperonin. Nat.Struct.Mol.Biol. V. 29 420 2022.
ISSN: ESSN 1545-9985
PubMed: 35449234
DOI: 10.1038/S41594-022-00755-1
Page generated: Wed Jul 10 10:01:18 2024

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