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Aluminium in PDB 7qv9: Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

Enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf

All present enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf:
2.7.7.6;

Other elements in 7qv9:

The structure of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf also contains other interesting chemical elements:

Fluorine (F) 12 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf (pdb code 7qv9). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf, PDB code: 7qv9:
Jump to Aluminium binding site number: 1; 2; 3; 4;

Aluminium binding site 1 out of 4 in 7qv9

Go back to Aluminium Binding Sites List in 7qv9
Aluminium binding site 1 out of 4 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Al602

b:35.5
occ:1.00
AL a:AF3602 0.0 35.5 1.0
F3 a:AF3602 1.8 35.4 1.0
F1 a:AF3602 1.8 36.1 1.0
F2 a:AF3602 1.8 40.1 1.0
O2B a:ADP601 2.6 56.7 1.0
PB a:ADP601 3.4 54.7 1.0
O1B a:ADP601 3.4 28.0 1.0
O3B a:ADP601 3.9 55.0 1.0
NH2 f:ARG168 4.0 47.5 1.0
OD1 a:ASP107 4.0 193.7 1.0
NZ a:LYS42 4.3 265.8 1.0
CG a:GLU108 4.6 202.0 1.0
NH1 f:ARG168 4.7 39.2 1.0
O2A a:ADP601 4.8 21.9 1.0
O3A a:ADP601 4.8 52.1 1.0
CZ f:ARG168 4.9 109.0 1.0
CG a:ASP107 5.0 288.9 1.0

Aluminium binding site 2 out of 4 in 7qv9

Go back to Aluminium Binding Sites List in 7qv9
Aluminium binding site 2 out of 4 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Al602

b:84.7
occ:1.00
AL b:AF3602 0.0 84.7 1.0
F3 b:AF3602 1.8 52.0 1.0
F2 b:AF3602 1.8 55.5 1.0
F1 b:AF3602 1.8 66.5 1.0
O1B b:ADP601 2.4 113.5 1.0
PB b:ADP601 3.2 104.0 1.0
O2B b:ADP601 3.2 67.7 1.0
OE1 b:GLU108 3.3 112.4 1.0
O3B b:ADP601 4.0 42.4 1.0
NH2 a:ARG168 4.2 92.1 1.0
CD b:GLU108 4.2 338.7 1.0
OE2 b:GLU108 4.3 178.1 1.0
OD1 b:ASP107 4.4 89.2 1.0
OD2 b:ASP107 4.4 272.1 1.0
O3A b:ADP601 4.5 67.8 1.0
NZ b:LYS42 4.6 28.3 1.0
CG b:ASP107 4.8 253.2 1.0

Aluminium binding site 3 out of 4 in 7qv9

Go back to Aluminium Binding Sites List in 7qv9
Aluminium binding site 3 out of 4 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Al602

b:87.7
occ:1.00
AL f:AF3602 0.0 87.7 1.0
F3 f:AF3602 1.8 115.2 1.0
F1 f:AF3602 1.8 159.0 1.0
F2 f:AF3602 1.8 86.5 1.0
O3B f:ADP601 2.7 115.9 1.0
PB f:ADP601 3.3 137.7 1.0
O2B f:ADP601 3.5 98.7 1.0
NH2 e:ARG168 3.9 42.2 1.0
OD1 f:ASP107 4.0 61.4 1.0
O1B f:ADP601 4.2 45.1 1.0
O3A f:ADP601 4.4 90.2 1.0
OE1 f:GLU108 4.8 246.2 1.0
CB f:GLU108 4.9 103.4 1.0
OD2 e:ASP164 4.9 434.3 1.0
CG f:ASP107 4.9 281.0 1.0
OD2 f:ASP107 4.9 342.0 1.0

Aluminium binding site 4 out of 4 in 7qv9

Go back to Aluminium Binding Sites List in 7qv9
Aluminium binding site 4 out of 4 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Al602

b:84.7
occ:1.00
AL e:AF3602 0.0 84.7 1.0
F1 e:AF3602 1.8 66.5 1.0
F3 e:AF3602 1.8 52.0 1.0
F2 e:AF3602 1.8 55.5 1.0
O3B e:ADP601 2.7 381.9 1.0
PB e:ADP601 3.0 283.5 1.0
O2B e:ADP601 3.1 324.1 1.0
OD2 e:ASP107 3.2 303.7 1.0
O1B e:ADP601 3.2 127.4 1.0
OE2 e:GLU108 3.9 470.3 1.0
CG e:ASP107 4.3 339.2 1.0
O3A e:ADP601 4.5 150.9 1.0
OD2 d:ASP164 4.5 763.8 1.0
OD1 e:ASP107 4.8 586.7 1.0

Reference:

F.Z.Ye, F.Gao, X.J.Liu, B.W.Zhang, M.Buck, X.D.Zhang. Structural Organization of Aaa+ Transcription Complexes Reveal the Novel Dna-Protein Interactions Used For Dna Opening To Be Published.
Page generated: Wed Jul 10 10:03:21 2024

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