Atomistry » Aluminium » PDB 7jl3-7t22 » 7rdy
Atomistry »
  Aluminium »
    PDB 7jl3-7t22 »
      7rdy »

Aluminium in PDB 7rdy: Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class:
2.7.7.48; 3.6.4.12; 3.6.4.13;

Other elements in 7rdy:

The structure of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 3 atoms
Zinc (Zn) 8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class (pdb code 7rdy). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class, PDB code: 7rdy:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 7rdy

Go back to Aluminium Binding Sites List in 7rdy
Aluminium binding site 1 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al1005

b:102.9
occ:1.00
AL E:AF31005 0.0 102.9 1.0
F2 E:AF31005 1.8 102.9 1.0
F1 E:AF31005 1.8 102.9 1.0
F3 E:AF31005 1.8 102.9 1.0
O3B E:ADP1003 2.5 102.8 1.0
O1B E:ADP1003 3.0 102.8 1.0
PB E:ADP1003 3.2 102.8 1.0
NH2 E:ARG567 3.2 108.5 1.0
MG E:MG1004 3.4 99.9 1.0
OE1 E:GLN404 3.9 98.8 1.0
CA E:GLY538 3.9 105.8 1.0
NH1 E:ARG443 4.0 108.4 1.0
O2B E:ADP1003 4.0 102.8 1.0
N E:GLY285 4.1 102.6 1.0
N E:GLY538 4.2 105.8 1.0
CB E:PRO284 4.2 101.4 1.0
CA E:PRO284 4.3 101.4 1.0
CZ E:ARG567 4.3 108.5 1.0
NZ E:LYS288 4.3 95.0 1.0
OE2 E:GLU375 4.4 90.0 1.0
O3A E:ADP1003 4.5 102.8 1.0
CE E:LYS288 4.5 95.0 1.0
NH2 E:ARG443 4.6 108.4 1.0
C E:GLY538 4.7 105.8 1.0
C E:PRO284 4.7 101.4 1.0
CZ E:ARG443 4.7 108.4 1.0
CD E:GLN404 4.9 98.8 1.0
O E:GLY538 4.9 105.8 1.0
NE E:ARG567 5.0 108.5 1.0

Aluminium binding site 2 out of 2 in 7rdy

Go back to Aluminium Binding Sites List in 7rdy
Aluminium binding site 2 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc - Engaged Class within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al1005

b:215.5
occ:1.00
AL F:AF31005 0.0 215.5 1.0
F1 F:AF31005 1.8 215.5 1.0
F3 F:AF31005 1.8 215.5 1.0
F2 F:AF31005 1.8 215.5 1.0
O3B F:ADP1003 2.7 215.1 1.0
N F:GLY285 3.5 216.2 1.0
CD F:LYS288 3.7 208.3 1.0
NZ F:LYS288 3.7 208.3 1.0
CA F:GLY285 3.7 216.2 1.0
CG F:LYS288 4.0 208.3 1.0
NH2 F:ARG443 4.1 228.1 1.0
PB F:ADP1003 4.1 215.1 1.0
NH1 F:ARG443 4.1 228.1 1.0
CE F:LYS288 4.2 208.3 1.0
C F:PRO284 4.6 215.3 1.0
CZ F:ARG443 4.6 228.1 1.0
O1A F:ADP1003 4.6 215.1 1.0
MG F:MG1004 4.6 208.9 1.0
NH2 F:ARG567 4.7 233.5 1.0
O2B F:ADP1003 4.8 215.1 1.0
O1B F:ADP1003 4.8 215.1 1.0
OE1 F:GLU375 4.9 196.8 1.0
CA F:PRO284 4.9 215.3 1.0
C F:GLY285 5.0 216.2 1.0

Reference:

J.Chen, Q.Wang, B.Malone, E.Llewellyn, Y.Pechersky, K.Maruthi, E.T.Eng, J.K.Perry, E.A.Campbell, D.E.Shaw, S.A.Darst. Ensemble Cryo-Electron Microscopy Reveals Conformational States of the NSP13 Helicase in the Sars-Cov-2 Helicase Replication-Transcription Complex Biorxiv 2021.
DOI: 10.1101/2021.11.10.468168
Page generated: Wed Jul 10 10:04:09 2024

Last articles

Ca in 4BYA
Ca in 4BXS
Ca in 4BY6
Ca in 4BQ3
Ca in 4BIH
Ca in 4BTY
Ca in 4BTX
Ca in 4BTW
Ca in 4BQ5
Ca in 4BU4
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy