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Aluminium in PDB 7re1: Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite)

Enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite)

All present enzymatic activity of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite):
2.7.7.48; 3.6.4.12; 3.6.4.13;

Other elements in 7re1:

The structure of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite) also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Magnesium (Mg) 3 atoms
Zinc (Zn) 8 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite) (pdb code 7re1). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite), PDB code: 7re1:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in 7re1

Go back to Aluminium Binding Sites List in 7re1
Aluminium binding site 1 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite)


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al706

b:86.8
occ:1.00
AL E:AF3706 0.0 86.8 1.0
F2 E:AF3706 1.8 86.8 1.0
F3 E:AF3706 1.8 86.8 1.0
F1 E:AF3706 1.8 86.8 1.0
O3B E:ADP704 2.5 84.8 1.0
O1B E:ADP704 2.9 84.8 1.0
PB E:ADP704 3.1 84.8 1.0
MG E:MG705 3.2 86.2 1.0
OE2 E:GLU375 3.4 87.3 1.0
NH2 E:ARG567 3.7 88.5 1.0
NE2 E:GLN404 4.0 88.5 1.0
O2B E:ADP704 4.0 84.8 1.0
CA E:GLY538 4.1 92.0 1.0
N E:GLY538 4.2 92.0 1.0
CB E:PRO284 4.3 85.1 1.0
CA E:PRO284 4.3 85.1 1.0
N E:GLY285 4.4 84.9 1.0
NH1 E:ARG443 4.4 85.4 1.0
NZ E:LYS288 4.4 83.4 1.0
CD E:GLU375 4.4 87.3 1.0
O3A E:ADP704 4.5 84.8 1.0
CZ E:ARG567 4.6 88.5 1.0
CE E:LYS288 4.7 83.4 1.0
OE1 E:GLU375 4.8 87.3 1.0
C E:PRO284 4.9 85.1 1.0
NH2 E:ARG443 4.9 85.4 1.0
C E:GLY538 5.0 92.0 1.0

Aluminium binding site 2 out of 2 in 7re1

Go back to Aluminium Binding Sites List in 7re1
Aluminium binding site 2 out of 2 in the Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite)


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Sars-Cov-2 Replication-Transcription Complex Bound to NSP13 Helicase - NSP13(2)-Rtc (Composite) within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al1005

b:106.5
occ:1.00
AL F:AF31005 0.0 106.5 1.0
F2 F:AF31005 1.8 106.5 1.0
F3 F:AF31005 1.8 106.5 1.0
F1 F:AF31005 1.8 106.5 1.0
O3B F:ADP1003 2.9 108.4 1.0
NZ F:LYS288 3.1 102.9 1.0
O2B F:ADP1003 3.2 108.4 1.0
PB F:ADP1003 3.3 108.4 1.0
N F:GLY285 3.6 107.9 1.0
MG F:MG1004 3.7 106.9 1.0
O1B F:ADP1003 3.8 108.4 1.0
CA F:PRO284 4.0 107.6 1.0
CE F:LYS288 4.1 102.9 1.0
O F:GLY282 4.2 102.3 1.0
O F:PRO283 4.3 105.9 1.0
C F:PRO284 4.4 107.6 1.0
CA F:GLY285 4.5 107.9 1.0
NH2 F:ARG567 4.5 114.5 1.0
NE2 F:GLN404 4.7 105.0 1.0
N F:THR286 4.8 106.9 1.0
C F:PRO283 4.8 105.9 1.0
N F:PRO284 4.8 107.6 1.0
O3A F:ADP1003 4.9 108.4 1.0

Reference:

J.Chen, Q.Wang, B.Malone, E.Llewellyn, Y.Pechersky, K.Maruthi, E.T.Eng, J.K.Perry, E.A.Campbell, D.E.Shaw, S.A.Darst. Ensemble Cryo-Electron Microscopy Reveals Conformational States of the NSP13 Helicase in the Sars-Cov-2 Helicase Replication-Transcription Complex Biorxiv 2021.
DOI: 10.1101/2021.11.10.468168
Page generated: Wed Jul 10 10:05:01 2024

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