Aluminium in PDB 7t21: E. Coli Dnab Bound to Ssdna and Adp-ALF4

All present enzymatic activity of E. Coli Dnab Bound to Ssdna and Adp-ALF4:
3.6.4.12;

The structure of E. Coli Dnab Bound to Ssdna and Adp-ALF4 also contains other interesting chemical elements:

Fluorine	(F)	20 atoms
Magnesium	(Mg)	5 atoms

The binding sites of Aluminium atom in the E. Coli Dnab Bound to Ssdna and Adp-ALF4 (pdb code 7t21). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the E. Coli Dnab Bound to Ssdna and Adp-ALF4, PDB code: 7t21:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5;

Aluminium binding site 1 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Al1002 b:215.9 occ:1.00 AL B:ALF1002 0.0 215.9 1.0 F3 B:ALF1002 1.8 215.9 1.0 F2 B:ALF1002 1.8 215.9 1.0 F1 B:ALF1002 1.8 215.9 1.0 F4 B:ALF1002 1.8 216.0 1.0 OE1 B:GLU262 2.0 181.3 1.0 O2B B:ADP1001 2.0 215.9 1.0 MG B:MG1003 2.7 216.0 1.0 CD B:GLU262 2.8 181.3 1.0 OE2 B:GLU262 3.0 181.3 1.0 PB B:ADP1001 3.1 215.9 1.0 O1B B:ADP1001 3.4 215.9 1.0 O2A B:ADP1001 4.0 215.9 1.0 O3B B:ADP1001 4.0 215.9 1.0 CG B:GLU262 4.3 181.3 1.0 NE A:ARG442 4.3 149.4 1.0 O3A B:ADP1001 4.3 215.9 1.0 OG1 B:THR238 4.4 153.2 1.0 N B:SER234 4.5 147.7 1.0 CA B:PRO233 4.6 151.4 1.0 CD A:ARG442 4.6 149.4 1.0 NZ A:LYS440 4.7 157.3 1.0 CZ A:ARG442 4.7 149.4 1.0 PA B:ADP1001 4.8 215.9 1.0 CB B:PRO233 4.8 151.4 1.0 CG A:ARG442 4.9 149.4 1.0 NE2 B:GLN384 4.9 175.9 1.0 CE A:LYS440 4.9 157.3 1.0 NH2 A:ARG442 4.9 149.4 1.0

Aluminium binding site 2 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ C:Al1002 b:215.9 occ:1.00 AL C:ALF1002 0.0 215.9 1.0 F3 C:ALF1002 1.8 216.0 1.0 F2 C:ALF1002 1.8 215.9 1.0 F4 C:ALF1002 1.8 215.8 1.0 F1 C:ALF1002 1.8 216.0 1.0 OE1 C:GLU262 2.0 156.5 1.0 O2B C:ADP1001 2.1 215.9 1.0 MG C:MG1003 2.7 215.9 1.0 CD C:GLU262 2.8 156.5 1.0 OE2 C:GLU262 3.0 156.5 1.0 PB C:ADP1001 3.2 215.9 1.0 O3B C:ADP1001 3.4 215.9 1.0 O1A C:ADP1001 4.1 215.9 1.0 O3A C:ADP1001 4.2 215.9 1.0 CG C:GLU262 4.3 156.5 1.0 O1B C:ADP1001 4.3 215.9 1.0 NE2 C:GLN384 4.4 150.8 1.0 OG1 C:THR238 4.4 124.1 1.0 PA C:ADP1001 4.5 216.0 1.0 O2A C:ADP1001 4.5 216.0 1.0 NZ B:LYS440 4.6 173.4 1.0 CA C:PRO233 4.7 118.8 1.0 CB C:PRO233 4.7 118.8 1.0 CB C:GLU262 4.8 156.5 1.0

Aluminium binding site 3 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ D:Al1002 b:215.9 occ:1.00 AL D:ALF1002 0.0 215.9 1.0 F2 D:ALF1002 1.8 215.9 1.0 F3 D:ALF1002 1.8 215.9 1.0 F1 D:ALF1002 1.8 215.9 1.0 F4 D:ALF1002 1.8 215.9 1.0 OE1 D:GLU262 2.0 179.0 1.0 O2B D:ADP1001 2.1 215.9 1.0 MG D:MG1003 2.8 215.9 1.0 CD D:GLU262 2.8 179.0 1.0 OE2 D:GLU262 3.1 179.0 1.0 PB D:ADP1001 3.2 215.9 1.0 O3B D:ADP1001 3.4 215.9 1.0 O1A D:ADP1001 3.8 216.0 1.0 O3A D:ADP1001 4.0 216.0 1.0 NE C:ARG442 4.1 167.7 1.0 CG D:GLU262 4.3 179.0 1.0 CZ C:ARG442 4.3 167.7 1.0 N D:SER234 4.3 146.3 1.0 OG1 D:THR238 4.4 144.0 1.0 O1B D:ADP1001 4.4 215.9 1.0 CD C:ARG442 4.5 167.7 1.0 PA D:ADP1001 4.5 215.9 1.0 NH2 C:ARG442 4.5 167.7 1.0 CA D:PRO233 4.6 144.1 1.0 NZ C:LYS440 4.8 164.5 1.0 CB D:PRO233 4.8 144.1 1.0 NH1 C:ARG442 4.8 167.7 1.0 CG C:ARG442 4.9 167.7 1.0 CE C:LYS440 4.9 164.5 1.0

Aluminium binding site 4 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ E:Al1002 b:215.9 occ:1.00 AL E:ALF1002 0.0 215.9 1.0 F3 E:ALF1002 1.8 216.0 1.0 F2 E:ALF1002 1.8 215.9 1.0 F4 E:ALF1002 1.8 215.9 1.0 F1 E:ALF1002 1.8 216.0 1.0 OE1 E:GLU262 2.0 175.0 1.0 O2B E:ADP1001 2.1 215.9 1.0 MG E:MG1003 2.7 215.9 1.0 CD E:GLU262 2.8 175.0 1.0 OE2 E:GLU262 3.0 175.0 1.0 PB E:ADP1001 3.2 215.9 1.0 O3B E:ADP1001 3.4 215.9 1.0 O1A E:ADP1001 3.8 216.0 1.0 O3A E:ADP1001 4.1 215.9 1.0 PA E:ADP1001 4.2 216.0 1.0 CG E:GLU262 4.3 175.0 1.0 NZ D:LYS440 4.3 177.3 1.0 O2A E:ADP1001 4.3 216.0 1.0 O1B E:ADP1001 4.3 215.9 1.0 NE2 E:GLN384 4.4 160.4 1.0 OG1 E:THR238 4.4 127.2 1.0 CA E:PRO233 4.6 141.3 1.0 CB E:PRO233 4.6 141.3 1.0 O D:GLN410 4.9 208.9 1.0 N E:SER234 5.0 146.9 1.0

Aluminium binding site 5 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range: probe atom residue distance (Å) B Occ F:Al1002 b:215.9 occ:1.00 AL F:ALF1002 0.0 215.9 1.0 F3 F:ALF1002 1.8 216.0 1.0 F2 F:ALF1002 1.8 215.9 1.0 F1 F:ALF1002 1.8 215.9 1.0 F4 F:ALF1002 1.8 215.9 1.0 OE1 F:GLU262 2.0 125.1 1.0 O1B F:ADP1001 2.1 216.0 1.0 MG F:MG1003 2.7 216.0 1.0 CD F:GLU262 2.8 125.1 1.0 PB F:ADP1001 2.8 215.9 1.0 OE2 F:GLU262 3.0 125.1 1.0 O3B F:ADP1001 3.2 216.0 1.0 O2B F:ADP1001 3.4 215.8 1.0 NE2 F:GLN384 4.2 143.1 1.0 CG F:GLU262 4.2 125.1 1.0 O3A F:ADP1001 4.3 215.9 1.0 NZ E:LYS440 4.4 169.5 1.0 OG1 F:THR238 4.4 105.1 1.0 CB F:PRO233 4.8 122.1 1.0 CA F:PRO233 4.8 122.1 1.0 CZ E:ARG442 4.9 158.0 1.0 NH2 E:ARG442 5.0 158.0 1.0 NE E:ARG442 5.0 158.0 1.0 O E:GLN410 5.0 193.4 1.0

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.