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Aluminium in PDB 7t22: E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4

Enzymatic activity of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4

All present enzymatic activity of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101; 3.6.4.12;

Other elements in 7t22:

The structure of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms
Fluorine (F) 20 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 (pdb code 7t22). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 7t22:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5;

Aluminium binding site 1 out of 5 in 7t22

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Aluminium binding site 1 out of 5 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1002

b:157.7
occ:1.00
 AL B:ALF1002 0.0 157.7 1.0
F3 B:ALF1002 1.8 157.7 1.0
F2 B:ALF1002 1.8 157.7 1.0
F4 B:ALF1002 1.8 157.7 1.0
F1 B:ALF1002 1.8 157.7 1.0
O2B B:ADP1001 2.0 171.1 1.0
OE2 B:GLU262 2.6 170.5 1.0
MG B:MG1003 2.8 157.7 1.0
PB B:ADP1001 3.2 171.1 1.0
O3B B:ADP1001 3.4 171.1 1.0
O1A B:ADP1001 3.5 171.1 1.0
CD B:GLU262 3.7 170.5 1.0
O3A B:ADP1001 4.0 171.1 1.0
OE1 B:GLU262 4.2 170.5 1.0
PA B:ADP1001 4.2 171.1 1.0
CA B:PRO233 4.3 172.8 1.0
N B:SER234 4.3 177.2 1.0
O1B B:ADP1001 4.4 171.1 1.0
OG1 B:THR238 4.4 159.2 1.0
CB B:PRO233 4.4 172.8 1.0
NZ A:LYS440 4.5 202.3 1.0
NE2 B:GLN384 4.6 157.4 1.0
O2A B:ADP1001 4.6 171.1 1.0
NE A:ARG442 4.8 193.6 1.0
C B:PRO233 4.9 172.8 1.0
CE A:LYS440 4.9 202.3 1.0
CE B:LYS237 4.9 167.9 1.0
CG B:GLU262 5.0 170.5 1.0

Aluminium binding site 2 out of 5 in 7t22

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Aluminium binding site 2 out of 5 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al1002

b:129.2
occ:1.00
 AL C:ALF1002 0.0 129.2 1.0
F3 C:ALF1002 1.8 129.2 1.0
F2 C:ALF1002 1.8 129.2 1.0
F1 C:ALF1002 1.8 129.2 1.0
F4 C:ALF1002 1.8 129.2 1.0
O2B C:ADP1001 2.0 147.2 1.0
OE2 C:GLU262 2.5 129.2 1.0
MG C:MG1003 2.8 129.2 1.0
PB C:ADP1001 3.2 147.2 1.0
O3B C:ADP1001 3.3 147.2 1.0
O2A C:ADP1001 3.5 147.2 1.0
CD C:GLU262 3.6 129.2 1.0
OE1 C:GLU262 3.9 129.2 1.0
O3A C:ADP1001 4.1 147.2 1.0
PA C:ADP1001 4.2 147.2 1.0
CA C:PRO233 4.2 144.7 1.0
NE2 C:GLN384 4.2 133.8 1.0
N C:SER234 4.3 153.1 1.0
O1B C:ADP1001 4.4 147.2 1.0
CB C:PRO233 4.4 144.7 1.0
OG1 C:THR238 4.5 140.2 1.0
NZ B:LYS440 4.5 163.6 1.0
O1A C:ADP1001 4.6 147.2 1.0
C C:PRO233 4.8 144.7 1.0
CE B:LYS440 4.9 163.6 1.0
CG C:GLU262 4.9 129.2 1.0

Aluminium binding site 3 out of 5 in 7t22

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Aluminium binding site 3 out of 5 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al1002

b:139.9
occ:1.00
 AL D:ALF1002 0.0 139.9 1.0
F2 D:ALF1002 1.8 139.9 1.0
F3 D:ALF1002 1.8 139.9 1.0
F4 D:ALF1002 1.8 139.9 1.0
F1 D:ALF1002 1.8 139.9 1.0
O2B D:ADP1001 2.0 139.2 1.0
OE2 D:GLU262 2.6 131.3 1.0
MG D:MG1003 2.8 139.9 1.0
PB D:ADP1001 3.2 139.2 1.0
O3B D:ADP1001 3.4 139.2 1.0
CD D:GLU262 3.5 131.3 1.0
OE1 D:GLU262 3.6 131.3 1.0
O2A D:ADP1001 3.7 139.2 1.0
O3A D:ADP1001 4.1 139.2 1.0
PA D:ADP1001 4.2 139.2 1.0
NZ C:LYS440 4.3 141.8 1.0
O1A D:ADP1001 4.3 139.2 1.0
O1B D:ADP1001 4.4 139.2 1.0
OG1 D:THR238 4.5 135.2 1.0
CA D:PRO233 4.6 128.9 1.0
NE2 D:GLN384 4.6 131.0 1.0
CB D:PRO233 4.7 128.9 1.0
N D:SER234 4.7 143.3 1.0
O C:GLN410 4.8 141.0 1.0
CE C:LYS440 4.8 141.8 1.0
CG D:GLU262 4.9 131.3 1.0

Aluminium binding site 4 out of 5 in 7t22

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Aluminium binding site 4 out of 5 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al1002

b:157.4
occ:1.00
 AL E:ALF1002 0.0 157.4 1.0
F2 E:ALF1002 1.8 157.4 1.0
F3 E:ALF1002 1.8 157.4 1.0
F1 E:ALF1002 1.8 157.4 1.0
F4 E:ALF1002 1.8 157.4 1.0
O2B E:ADP1001 2.0 152.6 1.0
OE2 E:GLU262 2.6 141.6 1.0
MG E:MG1003 2.8 157.4 1.0
PB E:ADP1001 3.2 152.6 1.0
O1B E:ADP1001 3.4 152.6 1.0
CD E:GLU262 3.4 141.6 1.0
OE1 E:GLU262 3.6 141.6 1.0
O2A E:ADP1001 3.7 152.6 1.0
O3A E:ADP1001 4.1 152.6 1.0
NE2 E:GLN384 4.1 139.6 1.0
PA E:ADP1001 4.2 152.6 1.0
O3B E:ADP1001 4.4 152.6 1.0
OG1 E:THR238 4.5 142.0 1.0
O1A E:ADP1001 4.5 152.6 1.0
N E:SER234 4.6 152.8 1.0
CB E:PRO233 4.6 138.5 1.0
CA E:PRO233 4.7 138.5 1.0
CG E:GLU262 4.8 141.6 1.0
NZ D:LYS440 4.8 140.1 1.0
CE D:LYS440 4.9 140.1 1.0

Aluminium binding site 5 out of 5 in 7t22

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Aluminium binding site 5 out of 5 in the E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of E. Coli Dnab Bound to Two Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al1002

b:168.3
occ:1.00
 AL F:ALF1002 0.0 168.3 1.0
F3 F:ALF1002 1.8 168.3 1.0
F2 F:ALF1002 1.8 168.3 1.0
F4 F:ALF1002 1.8 168.3 1.0
F1 F:ALF1002 1.8 168.3 1.0
O1B F:ADP1001 2.0 175.8 1.0
OE2 F:GLU262 2.6 178.3 1.0
MG F:MG1003 2.8 168.3 1.0
PB F:ADP1001 3.2 175.8 1.0
O2B F:ADP1001 3.4 175.8 1.0
CD F:GLU262 3.5 178.3 1.0
OE1 F:GLU262 3.7 178.3 1.0
O1A F:ADP1001 3.9 175.8 1.0
O3A F:ADP1001 4.0 175.8 1.0
CE F:LYS237 4.3 183.3 1.0
NE2 F:GLN384 4.3 175.7 1.0
PA F:ADP1001 4.3 175.8 1.0
O3B F:ADP1001 4.4 175.8 1.0
OG1 F:THR238 4.4 181.6 1.0
CA F:PRO233 4.5 167.1 1.0
CB F:PRO233 4.6 167.1 1.0
N F:SER234 4.6 179.9 1.0
O2A F:ADP1001 4.6 175.8 1.0
NZ F:LYS237 4.7 183.3 1.0
CG F:GLU262 4.9 178.3 1.0
NZ E:LYS440 4.9 145.7 1.0
CE E:LYS440 5.0 145.7 1.0

Reference:

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Wed Jul 10 10:07:24 2024

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