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Aluminium in PDB 7tub: The Beta-Tubulin Folding Intermediate IV

Other elements in 7tub:

The structure of The Beta-Tubulin Folding Intermediate IV also contains other interesting chemical elements:

Magnesium (Mg) 8 atoms
Fluorine (F) 24 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the The Beta-Tubulin Folding Intermediate IV (pdb code 7tub). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 8 binding sites of Aluminium where determined in the The Beta-Tubulin Folding Intermediate IV, PDB code: 7tub:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Aluminium binding site 1 out of 8 in 7tub

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Aluminium binding site 1 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al603

b:53.6
occ:1.00
 AL B:AF3603 0.0 53.6 1.0
F1 B:AF3603 1.8 53.6 1.0
F3 B:AF3603 1.8 53.6 1.0
F2 B:AF3603 1.8 53.6 1.0
O3B B:ADP602 3.0 49.4 1.0
OD1 B:ASP99 3.3 49.9 1.0
OD2 B:ASP68 3.3 51.6 1.0
O1A B:ADP602 3.6 49.4 1.0
OD2 B:ASP394 3.6 48.3 1.0
OG1 B:THR101 3.7 46.6 1.0
O1B B:ADP602 3.9 49.4 1.0
CG B:ASP68 4.0 51.6 1.0
PB B:ADP602 4.0 49.4 1.0
NZ B:LYS171 4.1 49.7 1.0
MG B:MG601 4.3 51.9 1.0
CA B:ASP68 4.3 51.6 1.0
N B:ALA69 4.5 48.7 1.0
CG B:ASP99 4.5 49.9 1.0
O B:HOH701 4.6 39.6 1.0
CD B:LYS171 4.6 49.7 1.0
PA B:ADP602 4.6 49.4 1.0
CB B:ASP68 4.6 51.6 1.0
OD1 B:ASP68 4.6 51.6 1.0
CG B:ASP394 4.7 48.3 1.0
CE B:LYS171 4.8 49.7 1.0
O3A B:ADP602 4.8 49.4 1.0
N B:GLY100 4.9 47.8 1.0
N B:THR101 4.9 46.6 1.0
C B:ASP68 5.0 51.6 1.0

Aluminium binding site 2 out of 8 in 7tub

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Aluminium binding site 2 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al603

b:51.0
occ:1.00
 AL C:AF3603 0.0 51.0 1.0
F1 C:AF3603 1.8 51.0 1.0
F2 C:AF3603 1.8 51.0 1.0
F3 C:AF3603 1.8 51.0 1.0
O3B C:ADP602 2.8 52.9 1.0
O1B C:ADP602 3.2 52.9 1.0
OD1 C:ASP61 3.2 49.0 1.0
PB C:ADP602 3.6 52.9 1.0
OD2 C:ASP391 3.7 48.7 1.0
NZ C:LYS166 4.0 47.5 1.0
OG1 C:THR94 4.1 46.2 1.0
CG C:ASP61 4.1 49.0 1.0
O2A C:ADP602 4.1 52.9 1.0
N C:GLY62 4.2 44.3 1.0
OD1 C:ASP92 4.3 49.8 1.0
CA C:ASP61 4.4 49.0 1.0
CG2 C:THR94 4.4 46.2 1.0
O3A C:ADP602 4.6 52.9 1.0
PA C:ADP602 4.6 52.9 1.0
CE C:LYS166 4.6 47.5 1.0
O1A C:ADP602 4.6 52.9 1.0
N C:THR94 4.6 46.2 1.0
MG C:MG601 4.7 56.0 1.0
N C:GLY93 4.7 47.5 1.0
CG C:ASP391 4.8 48.7 1.0
O2B C:ADP602 4.8 52.9 1.0
CB C:THR94 4.8 46.2 1.0
CB C:ASP61 4.8 49.0 1.0
O C:HOH701 4.8 39.4 1.0
C C:ASP61 4.8 49.0 1.0
OD2 C:ASP61 4.9 49.0 1.0

Aluminium binding site 3 out of 8 in 7tub

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Aluminium binding site 3 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al603

b:50.4
occ:1.00
 AL D:AF3603 0.0 50.4 1.0
F3 D:AF3603 1.6 50.4 1.0
F2 D:AF3603 1.6 50.4 1.0
F1 D:AF3603 1.6 50.4 1.0
MG D:MG601 1.8 50.1 1.0
O3B D:ADP602 2.5 48.5 1.0
O3A D:ADP602 3.3 48.5 1.0
PB D:ADP602 3.4 48.5 1.0
OD1 D:ASP73 3.5 48.4 1.0
OG1 D:THR106 3.7 43.5 1.0
OD1 D:ASP104 3.8 46.5 1.0
O1B D:ADP602 3.9 48.5 1.0
O1A D:ADP602 4.2 48.5 1.0
CG2 D:THR107 4.2 42.6 1.0
OD2 D:ASP404 4.2 48.0 1.0
N D:GLY105 4.3 43.5 1.0
N D:GLY74 4.4 44.2 1.0
N D:THR106 4.4 43.5 1.0
PA D:ADP602 4.5 48.5 1.0
NZ D:LYS176 4.5 50.8 1.0
CE D:LYS176 4.6 50.8 1.0
CG D:ASP73 4.7 48.4 1.0
N D:THR107 4.7 42.6 1.0
CA D:ASP73 4.8 48.4 1.0
O2B D:ADP602 4.8 48.5 1.0
CB D:THR106 4.9 43.5 1.0
CA D:GLY105 5.0 43.5 1.0

Aluminium binding site 4 out of 8 in 7tub

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Aluminium binding site 4 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al603

b:43.0
occ:1.00
 AL E:AF3603 0.0 43.0 1.0
F1 E:AF3603 1.8 43.0 1.0
F2 E:AF3603 1.8 43.0 1.0
F3 E:AF3603 1.8 43.0 1.0
OD1 E:ASP66 2.8 43.2 1.0
CG E:ASP66 3.1 43.2 1.0
OG1 E:THR99 3.3 38.3 1.0
O3B E:ADP602 3.4 41.8 1.0
OD2 E:ASP66 3.5 43.2 1.0
OD2 E:ASP392 3.6 42.1 1.0
NZ E:LYS170 3.7 43.6 1.0
CA E:ASP66 3.7 43.2 1.0
N E:GLY67 3.8 40.5 1.0
CB E:ASP66 4.0 43.2 1.0
OD1 E:ASP97 4.2 41.7 1.0
O E:HOH701 4.3 36.4 1.0
CE E:LYS170 4.3 43.6 1.0
C E:ASP66 4.3 43.2 1.0
OG1 E:THR100 4.6 37.5 1.0
CB E:THR99 4.6 38.3 1.0
CG E:ASP392 4.7 42.1 1.0
PB E:ADP602 4.8 41.8 1.0
N E:THR99 4.8 38.3 1.0
CG2 E:THR99 4.8 38.3 1.0
N E:ASP66 4.8 43.2 1.0
MG E:MG601 4.9 44.3 1.0
CA E:GLY67 5.0 40.5 1.0

Aluminium binding site 5 out of 8 in 7tub

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Aluminium binding site 5 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al603

b:43.5
occ:1.00
 AL F:AF3603 0.0 43.5 1.0
F3 F:AF3603 1.8 43.5 1.0
F2 F:AF3603 1.8 43.5 1.0
F1 F:AF3603 1.8 43.5 1.0
O3B F:ADP602 3.4 40.2 1.0
CG2 F:THR106 3.4 40.1 1.0
NZ F:LYS174 3.5 41.1 1.0
OD1 F:ASP73 3.8 43.9 1.0
O F:HOH701 3.9 35.7 1.0
CE F:LYS174 3.9 41.1 1.0
CA F:ASP73 4.1 43.9 1.0
OD1 F:ASP104 4.2 43.5 1.0
CG F:ASP73 4.3 43.9 1.0
N F:GLY74 4.3 39.8 1.0
MG F:MG601 4.4 45.2 1.0
O1A F:ADP602 4.4 40.2 1.0
CB F:ASP73 4.4 43.9 1.0
PB F:ADP602 4.6 40.2 1.0
O1B F:ADP602 4.6 40.2 1.0
OD2 F:ASP407 4.7 41.2 1.0
C F:ASP73 4.8 43.9 1.0
CB F:THR106 4.9 40.1 1.0

Aluminium binding site 6 out of 8 in 7tub

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Aluminium binding site 6 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Al603

b:48.2
occ:1.00
 AL G:AF3603 0.0 48.2 1.0
F3 G:AF3603 1.6 48.2 1.0
F2 G:AF3603 1.6 48.2 1.0
F1 G:AF3603 1.6 48.2 1.0
MG G:MG601 1.8 48.0 1.0
O3B G:ADP602 2.5 45.2 1.0
NZ G:LYS159 3.6 44.9 1.0
PB G:ADP602 3.7 45.2 1.0
O1B G:ADP602 3.9 45.2 1.0
OD2 G:ASP394 3.9 45.3 1.0
O1A G:ADP602 4.0 45.2 1.0
OG1 G:THR90 4.2 40.0 1.0
N G:GLY58 4.2 39.2 1.0
OD2 G:ASP57 4.2 42.6 1.0
OG1 G:THR91 4.2 38.5 1.0
OD1 G:ASP88 4.3 44.8 1.0
O3A G:ADP602 4.3 45.2 1.0
CA G:ASP57 4.4 42.6 1.0
CE G:LYS159 4.6 44.9 1.0
N G:THR90 4.6 40.0 1.0
CG G:ASP57 4.8 42.6 1.0
PA G:ADP602 4.8 45.2 1.0
N G:GLY89 4.9 42.4 1.0
C G:ASP57 4.9 42.6 1.0
O2B G:ADP602 4.9 45.2 1.0
N G:THR91 4.9 38.5 1.0

Aluminium binding site 7 out of 8 in 7tub

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Aluminium binding site 7 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Al603

b:47.5
occ:1.00
 AL H:AF3603 0.0 47.5 1.0
F2 H:AF3603 1.6 47.5 1.0
F3 H:AF3603 1.6 47.5 1.0
F1 H:AF3603 1.6 47.5 1.0
O3B H:ADP602 2.9 45.4 1.0
NZ H:LYS163 3.6 45.4 1.0
N H:GLY63 3.8 40.9 1.0
CE H:LYS163 3.9 45.4 1.0
OG1 H:THR95 4.0 41.2 1.0
PB H:ADP602 4.0 45.4 1.0
O1A H:ADP602 4.2 45.4 1.0
O1B H:ADP602 4.2 45.4 1.0
CA H:ASP62 4.2 43.8 1.0
OG1 H:THR96 4.3 38.3 1.0
O3A H:ADP602 4.3 45.4 1.0
OD2 H:ASP62 4.3 43.8 1.0
OD2 H:ASP393 4.4 50.0 1.0
CG H:ASP62 4.5 43.8 1.0
C H:ASP62 4.5 43.8 1.0
OD1 H:ASP93 4.6 47.1 1.0
O H:HOH701 4.7 41.2 1.0
CA H:GLY63 4.7 40.9 1.0
N H:THR95 4.8 41.2 1.0
CB H:ASP62 4.9 43.8 1.0
OD1 H:ASP62 4.9 43.8 1.0
O H:ASN61 4.9 42.9 1.0
PA H:ADP602 4.9 45.4 1.0

Aluminium binding site 8 out of 8 in 7tub

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Aluminium binding site 8 out of 8 in the The Beta-Tubulin Folding Intermediate IV


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of The Beta-Tubulin Folding Intermediate IV within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Al603

b:44.5
occ:1.00
 AL I:AF3603 0.0 44.5 1.0
F2 I:AF3603 1.8 44.5 1.0
F1 I:AF3603 1.8 44.5 1.0
F3 I:AF3603 1.8 44.5 1.0
OD1 I:ASP59 3.0 42.0 1.0
O3B I:ADP602 3.0 43.7 1.0
OD1 I:ASP90 3.6 41.7 1.0
O3A I:ADP602 3.8 43.7 1.0
PB I:ADP602 3.9 43.7 1.0
OG1 I:THR92 4.0 40.2 1.0
MG I:MG601 4.0 42.6 1.0
CG I:ASP59 4.0 42.0 1.0
N I:GLY60 4.1 40.2 1.0
NZ I:LYS159 4.1 44.3 1.0
CD I:LYS159 4.2 44.3 1.0
OD2 I:ASP393 4.2 45.7 1.0
OG1 I:THR93 4.2 38.9 1.0
O1B I:ADP602 4.3 43.7 1.0
O1A I:ADP602 4.3 43.7 1.0
O I:HOH701 4.4 35.5 1.0
CA I:ASP59 4.5 42.0 1.0
CE I:LYS159 4.7 44.3 1.0
N I:GLY91 4.7 41.9 1.0
CG I:ASP90 4.7 41.7 1.0
N I:THR92 4.7 40.2 1.0
PA I:ADP602 4.7 43.7 1.0
OD2 I:ASP59 4.7 42.0 1.0
C I:ASP59 4.8 42.0 1.0
CB I:ASP59 4.9 42.0 1.0
N I:THR93 4.9 38.9 1.0
CA I:GLY60 5.0 40.2 1.0

Reference:

D.Gestaut, Y.Zhao, J.Park, B.Ma, A.Leitner, M.Collier, G.Pintilie, S.H.Roh, W.Chiu, J.Frydman. Structural Visualization of the Tubulin Folding Pathway Directed By Human Chaperonin Tric/Cct. Cell V. 185 4770 2022.
ISSN: ISSN 1097-4172
PubMed: 36493755
DOI: 10.1016/J.CELL.2022.11.014
Page generated: Wed Jul 10 10:10:13 2024

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