Aluminium in PDB 8eff: Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
Other elements in 8eff:
The structure of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
(pdb code 8eff). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 4 binding sites of Aluminium where determined in the
Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane, PDB code: 8eff:
Jump to Aluminium binding site number:
1;
2;
3;
4;
Aluminium binding site 1 out
of 4 in 8eff
Go back to
Aluminium Binding Sites List in 8eff
Aluminium binding site 1 out
of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al1002
b:14.3
occ:1.00
|
AL
|
A:ALF1002
|
0.0
|
14.3
|
1.0
|
|
F3
|
A:ALF1002
|
1.8
|
15.9
|
1.0
|
|
F1
|
A:ALF1002
|
1.8
|
15.2
|
1.0
|
|
F2
|
A:ALF1002
|
1.8
|
15.3
|
1.0
|
|
F4
|
A:ALF1002
|
1.8
|
16.1
|
1.0
|
|
HG2
|
A:GLN297
|
2.7
|
121.5
|
1.0
|
|
O3B
|
A:GDP1001
|
3.0
|
9.7
|
1.0
|
|
HG1
|
A:THR323
|
3.3
|
32.5
|
1.0
|
|
HZ2
|
A:LYS301
|
3.5
|
134.2
|
1.0
|
|
H
|
A:THR323
|
3.6
|
25.9
|
1.0
|
|
H
|
A:MET322
|
3.6
|
24.4
|
1.0
|
|
MG
|
A:MG1003
|
3.6
|
7.9
|
1.0
|
|
O2B
|
A:GDP1001
|
3.6
|
6.3
|
1.0
|
|
CG
|
A:GLN297
|
3.7
|
121.5
|
1.0
|
|
HE21
|
A:GLN297
|
3.7
|
121.5
|
1.0
|
|
HA
|
A:GLN297
|
3.7
|
87.2
|
1.0
|
|
O
|
A:GLN297
|
3.7
|
87.2
|
1.0
|
|
HZ3
|
A:LYS301
|
3.7
|
134.2
|
1.0
|
|
PB
|
A:GDP1001
|
3.9
|
7.8
|
1.0
|
|
H
|
A:GLY401
|
3.9
|
89.2
|
1.0
|
|
HA3
|
A:GLY401
|
3.9
|
89.2
|
1.0
|
|
HG3
|
A:MET321
|
3.9
|
31.7
|
1.0
|
|
NZ
|
A:LYS301
|
4.0
|
134.2
|
1.0
|
|
HB
|
A:THR323
|
4.0
|
32.5
|
1.0
|
|
NE2
|
A:GLN297
|
4.1
|
121.5
|
1.0
|
|
HG3
|
A:GLN297
|
4.1
|
121.5
|
1.0
|
|
OG1
|
A:THR323
|
4.1
|
32.5
|
1.0
|
|
HZ1
|
A:LYS301
|
4.1
|
134.2
|
1.0
|
|
HB2
|
A:MET322
|
4.1
|
33.6
|
1.0
|
|
CD
|
A:GLN297
|
4.2
|
121.5
|
1.0
|
|
HA
|
A:MET321
|
4.3
|
26.7
|
1.0
|
|
CA
|
A:GLN297
|
4.4
|
87.2
|
1.0
|
|
N
|
A:THR323
|
4.4
|
25.9
|
1.0
|
|
N
|
A:MET322
|
4.4
|
24.4
|
1.0
|
|
C
|
A:GLN297
|
4.4
|
87.2
|
1.0
|
|
HG23
|
A:THR302
|
4.5
|
134.1
|
1.0
|
|
HG2
|
A:LYS301
|
4.5
|
134.2
|
1.0
|
|
O1B
|
A:GDP1001
|
4.5
|
7.1
|
1.0
|
|
CB
|
A:GLN297
|
4.5
|
121.5
|
1.0
|
|
CB
|
A:THR323
|
4.6
|
32.5
|
1.0
|
|
N
|
A:GLY401
|
4.6
|
89.2
|
1.0
|
|
HE22
|
A:GLN297
|
4.7
|
121.5
|
1.0
|
|
HA2
|
A:GLY300
|
4.7
|
87.7
|
1.0
|
|
CA
|
A:GLY401
|
4.7
|
89.2
|
1.0
|
|
K
|
A:K1004
|
4.8
|
30.0
|
1.0
|
|
CG
|
A:MET321
|
4.8
|
31.7
|
1.0
|
|
HG2
|
A:MET321
|
4.8
|
31.7
|
1.0
|
|
HB2
|
A:GLN297
|
4.9
|
121.5
|
1.0
|
|
H
|
A:LYS301
|
4.9
|
90.0
|
1.0
|
|
HG21
|
A:THR302
|
5.0
|
134.1
|
1.0
|
|
H
|
A:GLY300
|
5.0
|
87.7
|
1.0
|
|
CB
|
A:MET322
|
5.0
|
33.6
|
1.0
|
|
Aluminium binding site 2 out
of 4 in 8eff
Go back to
Aluminium Binding Sites List in 8eff
Aluminium binding site 2 out
of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Al1002
b:10.9
occ:1.00
|
AL
|
B:ALF1002
|
0.0
|
10.9
|
1.0
|
|
F4
|
B:ALF1002
|
1.8
|
13.6
|
1.0
|
|
F2
|
B:ALF1002
|
1.8
|
12.6
|
1.0
|
|
F3
|
B:ALF1002
|
1.8
|
14.3
|
1.0
|
|
F1
|
B:ALF1002
|
1.8
|
11.9
|
1.0
|
|
HG3
|
B:MET321
|
2.3
|
31.7
|
1.0
|
|
MG
|
B:MG1003
|
2.4
|
8.2
|
1.0
|
|
O2B
|
B:GDP1001
|
2.8
|
8.5
|
1.0
|
|
O1B
|
B:GDP1001
|
2.9
|
5.6
|
1.0
|
|
HD3
|
B:LYS301
|
3.1
|
134.2
|
1.0
|
|
HA
|
B:GLN297
|
3.1
|
87.2
|
1.0
|
|
CG
|
B:MET321
|
3.2
|
31.7
|
1.0
|
|
PB
|
B:GDP1001
|
3.3
|
7.9
|
1.0
|
|
HG2
|
B:MET321
|
3.3
|
31.7
|
1.0
|
|
HA
|
B:MET321
|
3.4
|
26.7
|
1.0
|
|
HB
|
B:THR323
|
3.4
|
34.1
|
1.0
|
|
H
|
B:GLY401
|
3.5
|
89.2
|
1.0
|
|
H
|
B:THR323
|
3.7
|
25.9
|
1.0
|
|
O3B
|
B:GDP1001
|
3.8
|
8.0
|
1.0
|
|
HE2
|
B:LYS301
|
3.9
|
134.2
|
1.0
|
|
HA3
|
B:GLY401
|
4.0
|
89.2
|
1.0
|
|
CD
|
B:LYS301
|
4.0
|
134.2
|
1.0
|
|
CA
|
B:GLN297
|
4.0
|
87.2
|
1.0
|
|
HB3
|
B:LYS301
|
4.1
|
134.2
|
1.0
|
|
CA
|
B:MET321
|
4.1
|
26.7
|
1.0
|
|
CB
|
B:MET321
|
4.1
|
31.7
|
1.0
|
|
O
|
B:ASP296
|
4.1
|
90.5
|
1.0
|
|
HE3
|
B:LYS301
|
4.1
|
134.2
|
1.0
|
|
N
|
B:GLY401
|
4.2
|
89.2
|
1.0
|
|
H
|
B:MET322
|
4.2
|
24.4
|
1.0
|
|
HB2
|
B:LYS301
|
4.2
|
134.2
|
1.0
|
|
CE
|
B:LYS301
|
4.3
|
134.2
|
1.0
|
|
CB
|
B:THR323
|
4.3
|
34.1
|
1.0
|
|
HB2
|
B:MET321
|
4.3
|
31.7
|
1.0
|
|
HG2
|
B:GLN297
|
4.3
|
121.5
|
1.0
|
|
C
|
B:GLN297
|
4.4
|
87.2
|
1.0
|
|
SD
|
B:MET321
|
4.4
|
31.7
|
1.0
|
|
N
|
B:THR323
|
4.5
|
25.9
|
1.0
|
|
OG1
|
B:THR323
|
4.5
|
34.1
|
1.0
|
|
O
|
B:SER298
|
4.5
|
85.1
|
1.0
|
|
HD2
|
B:LYS301
|
4.5
|
134.2
|
1.0
|
|
HA
|
B:PRO400
|
4.5
|
90.2
|
1.0
|
|
C
|
B:MET321
|
4.5
|
29.2
|
1.0
|
|
N
|
B:MET322
|
4.5
|
24.4
|
1.0
|
|
CB
|
B:LYS301
|
4.6
|
134.2
|
1.0
|
|
K
|
B:K1004
|
4.6
|
30.0
|
1.0
|
|
CA
|
B:GLY401
|
4.6
|
89.2
|
1.0
|
|
HB3
|
B:GLN297
|
4.6
|
121.5
|
1.0
|
|
O
|
B:GLN297
|
4.7
|
87.2
|
1.0
|
|
CB
|
B:GLN297
|
4.8
|
121.5
|
1.0
|
|
O3A
|
B:GDP1001
|
4.8
|
7.3
|
1.0
|
|
CG
|
B:LYS301
|
4.9
|
134.2
|
1.0
|
|
C
|
B:ASP296
|
4.9
|
90.5
|
1.0
|
|
N
|
B:GLN297
|
4.9
|
87.2
|
1.0
|
|
CA
|
B:THR323
|
5.0
|
22.2
|
1.0
|
|
HB3
|
B:MET321
|
5.0
|
31.7
|
1.0
|
|
HA2
|
B:GLY401
|
5.0
|
89.2
|
1.0
|
|
Aluminium binding site 3 out
of 4 in 8eff
Go back to
Aluminium Binding Sites List in 8eff
Aluminium binding site 3 out
of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 3 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al1002
b:14.3
occ:1.00
|
AL
|
C:ALF1002
|
0.0
|
14.3
|
1.0
|
|
F1
|
C:ALF1002
|
1.8
|
15.2
|
1.0
|
|
F2
|
C:ALF1002
|
1.8
|
15.3
|
1.0
|
|
F3
|
C:ALF1002
|
1.8
|
15.9
|
1.0
|
|
F4
|
C:ALF1002
|
1.8
|
16.1
|
1.0
|
|
HG2
|
C:GLN297
|
2.7
|
121.5
|
1.0
|
|
O3B
|
C:GDP1001
|
3.0
|
9.7
|
1.0
|
|
HG1
|
C:THR323
|
3.3
|
32.5
|
1.0
|
|
HZ2
|
C:LYS301
|
3.5
|
134.2
|
1.0
|
|
H
|
C:THR323
|
3.6
|
25.9
|
1.0
|
|
H
|
C:MET322
|
3.6
|
24.4
|
1.0
|
|
MG
|
C:MG1003
|
3.6
|
7.9
|
1.0
|
|
O2B
|
C:GDP1001
|
3.6
|
6.3
|
1.0
|
|
CG
|
C:GLN297
|
3.7
|
121.5
|
1.0
|
|
HE21
|
C:GLN297
|
3.7
|
121.5
|
1.0
|
|
HA
|
C:GLN297
|
3.7
|
87.2
|
1.0
|
|
O
|
C:GLN297
|
3.7
|
87.2
|
1.0
|
|
HZ3
|
C:LYS301
|
3.8
|
134.2
|
1.0
|
|
PB
|
C:GDP1001
|
3.9
|
7.8
|
1.0
|
|
H
|
C:GLY401
|
3.9
|
89.2
|
1.0
|
|
HA3
|
C:GLY401
|
3.9
|
89.2
|
1.0
|
|
HG3
|
C:MET321
|
3.9
|
31.7
|
1.0
|
|
NZ
|
C:LYS301
|
4.0
|
134.2
|
1.0
|
|
HB
|
C:THR323
|
4.0
|
32.5
|
1.0
|
|
NE2
|
C:GLN297
|
4.1
|
121.5
|
1.0
|
|
HG3
|
C:GLN297
|
4.1
|
121.5
|
1.0
|
|
OG1
|
C:THR323
|
4.1
|
32.5
|
1.0
|
|
HZ1
|
C:LYS301
|
4.1
|
134.2
|
1.0
|
|
HB2
|
C:MET322
|
4.1
|
33.6
|
1.0
|
|
CD
|
C:GLN297
|
4.2
|
121.5
|
1.0
|
|
HA
|
C:MET321
|
4.3
|
26.7
|
1.0
|
|
CA
|
C:GLN297
|
4.4
|
87.2
|
1.0
|
|
N
|
C:THR323
|
4.4
|
25.9
|
1.0
|
|
N
|
C:MET322
|
4.4
|
24.4
|
1.0
|
|
C
|
C:GLN297
|
4.4
|
87.2
|
1.0
|
|
HG23
|
C:THR302
|
4.5
|
134.1
|
1.0
|
|
HG2
|
C:LYS301
|
4.5
|
134.2
|
1.0
|
|
O1B
|
C:GDP1001
|
4.5
|
7.1
|
1.0
|
|
CB
|
C:GLN297
|
4.5
|
121.5
|
1.0
|
|
CB
|
C:THR323
|
4.6
|
32.5
|
1.0
|
|
N
|
C:GLY401
|
4.6
|
89.2
|
1.0
|
|
HE22
|
C:GLN297
|
4.7
|
121.5
|
1.0
|
|
HA2
|
C:GLY300
|
4.7
|
87.7
|
1.0
|
|
CA
|
C:GLY401
|
4.7
|
89.2
|
1.0
|
|
K
|
C:K1004
|
4.8
|
30.0
|
1.0
|
|
CG
|
C:MET321
|
4.8
|
31.7
|
1.0
|
|
HG2
|
C:MET321
|
4.8
|
31.7
|
1.0
|
|
HB2
|
C:GLN297
|
4.9
|
121.5
|
1.0
|
|
H
|
C:LYS301
|
4.9
|
90.0
|
1.0
|
|
HG21
|
C:THR302
|
5.0
|
134.1
|
1.0
|
|
H
|
C:GLY300
|
5.0
|
87.7
|
1.0
|
|
CB
|
C:MET322
|
5.0
|
33.6
|
1.0
|
|
Aluminium binding site 4 out
of 4 in 8eff
Go back to
Aluminium Binding Sites List in 8eff
Aluminium binding site 4 out
of 4 in the Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 4 of Cryoem of the Soluble OPA1 Tetramer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Al1002
b:10.9
occ:1.00
|
AL
|
D:ALF1002
|
0.0
|
10.9
|
1.0
|
|
F2
|
D:ALF1002
|
1.8
|
12.6
|
1.0
|
|
F4
|
D:ALF1002
|
1.8
|
13.6
|
1.0
|
|
F3
|
D:ALF1002
|
1.8
|
14.3
|
1.0
|
|
F1
|
D:ALF1002
|
1.8
|
11.9
|
1.0
|
|
HG3
|
D:MET321
|
2.3
|
31.7
|
1.0
|
|
MG
|
D:MG1003
|
2.4
|
8.2
|
1.0
|
|
O2B
|
D:GDP1001
|
2.8
|
8.5
|
1.0
|
|
O1B
|
D:GDP1001
|
2.9
|
5.6
|
1.0
|
|
HD3
|
D:LYS301
|
3.1
|
134.2
|
1.0
|
|
HA
|
D:GLN297
|
3.1
|
87.2
|
1.0
|
|
CG
|
D:MET321
|
3.2
|
31.7
|
1.0
|
|
PB
|
D:GDP1001
|
3.3
|
7.9
|
1.0
|
|
HG2
|
D:MET321
|
3.3
|
31.7
|
1.0
|
|
HA
|
D:MET321
|
3.4
|
26.7
|
1.0
|
|
HB
|
D:THR323
|
3.4
|
34.1
|
1.0
|
|
H
|
D:GLY401
|
3.5
|
89.2
|
1.0
|
|
H
|
D:THR323
|
3.7
|
25.9
|
1.0
|
|
O3B
|
D:GDP1001
|
3.8
|
8.0
|
1.0
|
|
HE2
|
D:LYS301
|
3.9
|
134.2
|
1.0
|
|
HA3
|
D:GLY401
|
4.0
|
89.2
|
1.0
|
|
CD
|
D:LYS301
|
4.0
|
134.2
|
1.0
|
|
CA
|
D:GLN297
|
4.0
|
87.2
|
1.0
|
|
HB3
|
D:LYS301
|
4.1
|
134.2
|
1.0
|
|
CA
|
D:MET321
|
4.1
|
26.7
|
1.0
|
|
CB
|
D:MET321
|
4.1
|
31.7
|
1.0
|
|
O
|
D:ASP296
|
4.1
|
90.5
|
1.0
|
|
HE3
|
D:LYS301
|
4.1
|
134.2
|
1.0
|
|
N
|
D:GLY401
|
4.2
|
89.2
|
1.0
|
|
H
|
D:MET322
|
4.2
|
24.4
|
1.0
|
|
HB2
|
D:LYS301
|
4.2
|
134.2
|
1.0
|
|
CE
|
D:LYS301
|
4.3
|
134.2
|
1.0
|
|
CB
|
D:THR323
|
4.3
|
34.1
|
1.0
|
|
HB2
|
D:MET321
|
4.3
|
31.7
|
1.0
|
|
HG2
|
D:GLN297
|
4.3
|
121.5
|
1.0
|
|
C
|
D:GLN297
|
4.4
|
87.2
|
1.0
|
|
SD
|
D:MET321
|
4.4
|
31.7
|
1.0
|
|
N
|
D:THR323
|
4.5
|
25.9
|
1.0
|
|
OG1
|
D:THR323
|
4.5
|
34.1
|
1.0
|
|
O
|
D:SER298
|
4.5
|
85.1
|
1.0
|
|
HD2
|
D:LYS301
|
4.5
|
134.2
|
1.0
|
|
HA
|
D:PRO400
|
4.5
|
90.2
|
1.0
|
|
C
|
D:MET321
|
4.5
|
29.2
|
1.0
|
|
N
|
D:MET322
|
4.5
|
24.4
|
1.0
|
|
CB
|
D:LYS301
|
4.6
|
134.2
|
1.0
|
|
K
|
D:K1004
|
4.6
|
30.0
|
1.0
|
|
CA
|
D:GLY401
|
4.6
|
89.2
|
1.0
|
|
HB3
|
D:GLN297
|
4.6
|
121.5
|
1.0
|
|
O
|
D:GLN297
|
4.7
|
87.2
|
1.0
|
|
CB
|
D:GLN297
|
4.8
|
121.5
|
1.0
|
|
O3A
|
D:GDP1001
|
4.8
|
7.3
|
1.0
|
|
CG
|
D:LYS301
|
4.9
|
134.2
|
1.0
|
|
C
|
D:ASP296
|
4.9
|
90.5
|
1.0
|
|
N
|
D:GLN297
|
4.9
|
87.2
|
1.0
|
|
CA
|
D:THR323
|
5.0
|
22.2
|
1.0
|
|
HB3
|
D:MET321
|
5.0
|
31.7
|
1.0
|
|
HA2
|
D:GLY401
|
5.0
|
89.2
|
1.0
|
|
Reference:
S.B.Nyenhuis,
X.Wu,
A.E.Stanton,
M.P.Strub,
Y.I.Yim,
B.Canagarajah,
J.E.Hinshaw.
OPA1 Helical Structures Give Perspective to Mitochondrial Dysfunction Nature 2023.
ISSN: ESSN 1476-4687
Page generated: Wed Jul 10 10:18:05 2024
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