Aluminium in PDB 8gj0: E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)

All present enzymatic activity of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1):
2.7.7.7;

The structure of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) also contains other interesting chemical elements:

Fluorine	(F)	12 atoms
Magnesium	(Mg)	3 atoms
Zinc	(Zn)	4 atoms

The binding sites of Aluminium atom in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) (pdb code 8gj0). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 3 binding sites of Aluminium where determined in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1), PDB code: 8gj0:
Jump to Aluminium binding site number: 1; 2; 3;

Aluminium binding site 1 out of 3 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Al703 b:90.1 occ:1.00 AL B:ALF703 0.0 90.1 1.0 F2 B:ALF703 1.8 84.8 1.0 F3 B:ALF703 1.8 83.9 1.0 F1 B:ALF703 1.8 100.1 1.0 F4 B:ALF703 1.8 95.6 1.0 O1B B:ADP701 2.1 84.9 1.0 HH12 C:ARG169 2.9 110.4 1.0 PB B:ADP701 3.0 81.2 1.0 O2B B:ADP701 3.1 108.1 1.0 MG B:MG702 3.2 72.2 1.0 O1A B:ADP701 3.5 105.5 1.0 HZ1 B:LYS51 3.5 90.0 1.0 NH1 C:ARG169 3.7 112.2 1.0 H B:GLY48 3.8 95.0 1.0 HH11 C:ARG169 4.0 110.0 1.0 O3A B:ADP701 4.1 75.9 1.0 O3B B:ADP701 4.2 89.3 1.0 HH11 B:ARG215 4.2 90.3 1.0 HZ3 B:LYS51 4.2 90.2 1.0 NZ B:LYS51 4.2 90.9 1.0 HE2 B:LYS51 4.2 90.5 1.0 HA B:ARG47 4.2 103.4 1.0 PA B:ADP701 4.3 105.5 1.0 HH22 C:ARG169 4.3 111.5 1.0 HH12 B:ARG215 4.5 92.2 1.0 N B:GLY48 4.6 88.8 1.0 NH1 B:ARG215 4.7 92.7 1.0 OE2 B:GLU127 4.7 107.0 1.0 CE B:LYS51 4.7 90.1 1.0 HG21 B:THR157 4.7 98.9 1.0 HG22 B:THR157 4.7 97.8 1.0 O2A B:ADP701 4.7 105.3 1.0 CZ C:ARG169 4.8 110.5 1.0 HG23 B:THR157 4.8 98.2 1.0 HG22 C:THR165 4.8 114.5 1.0 HG21 C:THR165 4.8 114.0 1.0 NH2 C:ARG169 4.9 113.1 1.0 HE3 B:LYS51 4.9 90.3 1.0 HZ2 B:LYS51 4.9 91.7 1.0 HB2 B:ARG47 5.0 104.3 1.0 CG2 B:THR157 5.0 94.8 1.0

Aluminium binding site 2 out of 3 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Al701 b:114.3 occ:1.00 AL D:ALF701 0.0 114.3 1.0 F1 D:ALF701 1.8 112.7 1.0 F4 D:ALF701 1.8 123.2 1.0 F2 D:ALF701 1.8 100.8 1.0 F3 D:ALF701 1.8 103.0 1.0 O1B C:ADP701 2.1 111.8 1.0 HH22 D:ARG169 2.9 95.5 1.0 HH22 C:ARG215 2.9 103.6 1.0 PB C:ADP701 2.9 117.1 1.0 O2B C:ADP701 3.0 124.2 1.0 MG C:MG702 3.2 110.7 1.0 HH12 D:ARG169 3.5 95.9 1.0 NH2 C:ARG215 3.6 99.9 1.0 NH2 D:ARG169 3.7 101.5 1.0 HH21 C:ARG215 3.7 103.5 1.0 O3B C:ADP701 3.7 113.5 1.0 H C:GLY48 3.9 105.4 1.0 O1A C:ADP701 3.9 124.2 1.0 HE3 C:LYS51 4.0 102.2 1.0 HZ3 C:LYS51 4.1 102.3 1.0 HA C:ARG47 4.1 101.4 1.0 HH21 D:ARG169 4.2 96.4 1.0 NH1 D:ARG169 4.3 96.8 1.0 O3A C:ADP701 4.3 103.1 1.0 HG22 C:THR157 4.4 119.8 1.0 OE2 C:GLU127 4.4 127.9 1.0 CZ D:ARG169 4.5 98.8 1.0 HG23 C:THR157 4.6 120.2 1.0 HG21 C:THR157 4.6 120.5 1.0 HH12 C:ARG215 4.6 105.5 1.0 CE C:LYS51 4.6 99.4 1.0 NZ C:LYS51 4.7 100.9 1.0 HZ1 C:LYS51 4.7 103.3 1.0 HE2 C:LYS51 4.7 103.0 1.0 HG22 D:THR165 4.7 104.9 1.0 PA C:ADP701 4.7 114.6 1.0 N C:GLY48 4.7 103.1 1.0 HB2 C:ARG47 4.7 102.2 1.0 CZ C:ARG215 4.7 100.1 1.0 CG2 C:THR157 4.7 119.6 1.0 HG21 D:THR165 4.8 105.0 1.0 CA C:ARG47 5.0 99.5 1.0

Aluminium binding site 3 out of 3 in the E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1)


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of E. Coli Clamp Loader with Open Clamp on Primed Template Dna (Form 1) within 5.0Å range: probe atom residue distance (Å) B Occ D:Al704 b:107.4 occ:1.00 AL D:ALF704 0.0 107.4 1.0 F3 D:ALF704 1.8 106.2 1.0 F2 D:ALF704 1.8 97.5 1.0 F4 D:ALF704 1.8 104.7 1.0 F1 D:ALF704 1.8 121.0 1.0 O1B D:ADP702 2.1 94.9 1.0 HH22 E:ARG158 2.9 96.8 1.0 PB D:ADP702 3.0 113.1 1.0 O2B D:ADP702 3.1 120.8 1.0 HH12 D:ARG215 3.3 100.4 1.0 MG D:MG703 3.4 109.8 1.0 HZ3 D:LYS51 3.4 84.7 1.0 NH2 E:ARG158 3.5 99.6 1.0 HH22 D:ARG215 3.5 101.1 1.0 HH21 E:ARG158 3.6 98.0 1.0 H D:GLY48 3.6 102.7 1.0 O3A D:ADP702 3.7 102.9 1.0 NH1 D:ARG215 4.0 100.5 1.0 OE2 D:GLU127 4.0 103.8 1.0 NH2 D:ARG215 4.1 102.4 1.0 NZ D:LYS51 4.2 89.9 1.0 HZ2 D:LYS51 4.2 86.2 1.0 HE2 D:LYS51 4.3 85.2 1.0 HA D:ARG47 4.3 110.3 1.0 O3B D:ADP702 4.4 111.7 1.0 N D:GLY48 4.4 108.8 1.0 CZ D:ARG215 4.4 97.0 1.0 HH11 D:ARG215 4.5 100.4 1.0 HA2 D:GLY48 4.6 101.0 1.0 HG22 E:THR154 4.6 107.3 1.0 CE D:LYS51 4.7 88.2 1.0 HG1 D:THR52 4.8 84.2 1.0 CZ E:ARG158 4.8 92.5 1.0 HH21 D:ARG215 4.8 100.3 1.0 HH12 E:ARG158 4.8 97.4 1.0 HG21 E:THR154 4.8 106.7 1.0 HB E:THR154 4.8 106.6 1.0 HZ1 D:LYS51 4.8 86.3 1.0 HE3 D:LYS51 4.8 84.3 1.0 HB D:THR157 4.9 101.7 1.0

Z.-Q.Xu, A.J.Oakley, N.E.Dixon. Structural Characterisation of the Complete Cycle of Sliding Clamp Loading in E. Coli To Be Published.