Aluminium in PDB 9eco: E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
Enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
All present enzymatic activity of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4:
2.7.7.101;
3.6.4.12;
Other elements in 9eco:
The structure of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 also contains other interesting chemical elements:
Aluminium Binding Sites:
The binding sites of Aluminium atom in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
(pdb code 9eco). This binding sites where shown within
5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the
E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4, PDB code: 9eco:
Jump to Aluminium binding site number:
1;
2;
3;
4;
5;
Aluminium binding site 1 out
of 5 in 9eco
Go back to
Aluminium Binding Sites List in 9eco
Aluminium binding site 1 out
of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 1 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Al501
b:123.0
occ:1.00
|
AL
|
A:ALF501
|
0.0
|
123.0
|
1.0
|
|
F2
|
A:ALF501
|
1.8
|
113.4
|
1.0
|
|
F3
|
A:ALF501
|
1.8
|
119.7
|
1.0
|
|
F4
|
A:ALF501
|
1.8
|
118.0
|
1.0
|
|
F1
|
A:ALF501
|
1.8
|
127.5
|
1.0
|
|
O2B
|
B:ADP1001
|
2.0
|
91.3
|
1.0
|
|
HH11
|
A:ARG442
|
2.5
|
115.0
|
1.0
|
|
HH12
|
A:ARG442
|
2.9
|
114.9
|
1.0
|
|
NH1
|
A:ARG442
|
3.1
|
114.5
|
1.0
|
|
HZ2
|
A:LYS440
|
3.3
|
110.8
|
1.0
|
|
PB
|
B:ADP1001
|
3.3
|
98.4
|
1.0
|
|
MG
|
B:MG1002
|
3.6
|
97.3
|
1.0
|
|
O1B
|
B:ADP1001
|
3.7
|
100.2
|
1.0
|
|
HE22
|
B:GLN384
|
3.8
|
102.4
|
1.0
|
|
O
|
A:GLN410
|
3.9
|
119.9
|
1.0
|
|
H
|
B:SER234
|
3.9
|
98.4
|
1.0
|
|
HZ1
|
A:LYS440
|
4.0
|
111.0
|
1.0
|
|
NZ
|
A:LYS440
|
4.0
|
110.9
|
1.0
|
|
HD3
|
A:ARG442
|
4.0
|
114.0
|
1.0
|
|
HE21
|
B:GLN384
|
4.1
|
106.7
|
1.0
|
|
HA
|
B:PRO233
|
4.1
|
99.5
|
1.0
|
|
O3A
|
B:ADP1001
|
4.2
|
103.8
|
1.0
|
|
NE2
|
B:GLN384
|
4.3
|
106.1
|
1.0
|
|
HA
|
A:GLN410
|
4.3
|
110.0
|
1.0
|
|
CZ
|
A:ARG442
|
4.3
|
113.3
|
1.0
|
|
HB3
|
B:PRO233
|
4.4
|
100.5
|
1.0
|
|
HZ2
|
B:LYS237
|
4.4
|
92.7
|
1.0
|
|
O3B
|
B:ADP1001
|
4.4
|
102.5
|
1.0
|
|
HE3
|
A:LYS440
|
4.5
|
105.7
|
1.0
|
|
HD2
|
A:ARG442
|
4.5
|
112.8
|
1.0
|
|
OE2
|
B:GLU262
|
4.6
|
118.1
|
1.0
|
|
HG2
|
B:GLU262
|
4.6
|
113.8
|
1.0
|
|
HZ3
|
A:LYS440
|
4.6
|
111.6
|
1.0
|
|
HE3
|
B:LYS237
|
4.6
|
90.6
|
1.0
|
|
CD
|
A:ARG442
|
4.7
|
114.4
|
1.0
|
|
N
|
B:SER234
|
4.7
|
98.2
|
1.0
|
|
CE
|
A:LYS440
|
4.8
|
106.1
|
1.0
|
|
HE1
|
B:TYR344
|
4.9
|
101.4
|
1.0
|
|
C
|
A:GLN410
|
4.9
|
113.3
|
1.0
|
|
CA
|
B:PRO233
|
4.9
|
97.7
|
1.0
|
|
NE
|
A:ARG442
|
5.0
|
111.2
|
1.0
|
|
Aluminium binding site 2 out
of 5 in 9eco
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Aluminium Binding Sites List in 9eco
Aluminium binding site 2 out
of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 2 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al1002
b:108.3
occ:1.00
|
AL
|
C:ALF1002
|
0.0
|
108.3
|
1.0
|
|
F2
|
C:ALF1002
|
1.8
|
111.2
|
1.0
|
|
F4
|
C:ALF1002
|
1.8
|
108.0
|
1.0
|
|
F1
|
C:ALF1002
|
1.8
|
118.7
|
1.0
|
|
F3
|
C:ALF1002
|
1.8
|
106.7
|
1.0
|
|
O2B
|
C:ADP1001
|
2.0
|
95.2
|
1.0
|
|
HH11
|
B:ARG442
|
3.1
|
105.8
|
1.0
|
|
PB
|
C:ADP1001
|
3.4
|
95.2
|
1.0
|
|
H
|
C:SER234
|
3.4
|
90.1
|
1.0
|
|
HZ2
|
B:LYS440
|
3.5
|
96.9
|
1.0
|
|
MG
|
C:MG1003
|
3.6
|
94.3
|
1.0
|
|
HE21
|
C:GLN384
|
3.7
|
92.3
|
1.0
|
|
O1B
|
C:ADP1001
|
3.7
|
99.9
|
1.0
|
|
HZ1
|
C:LYS237
|
3.8
|
92.2
|
1.0
|
|
NH1
|
B:ARG442
|
3.8
|
106.7
|
1.0
|
|
HE22
|
C:GLN384
|
3.9
|
96.7
|
1.0
|
|
HA
|
C:PRO233
|
3.9
|
90.5
|
1.0
|
|
HH12
|
B:ARG442
|
3.9
|
105.2
|
1.0
|
|
NE2
|
C:GLN384
|
4.1
|
93.5
|
1.0
|
|
HD3
|
B:ARG442
|
4.2
|
104.0
|
1.0
|
|
O
|
B:GLN410
|
4.3
|
112.2
|
1.0
|
|
N
|
C:SER234
|
4.3
|
88.6
|
1.0
|
|
HZ1
|
B:LYS440
|
4.3
|
97.0
|
1.0
|
|
O3A
|
C:ADP1001
|
4.3
|
92.5
|
1.0
|
|
NZ
|
B:LYS440
|
4.3
|
95.5
|
1.0
|
|
HE3
|
B:LYS440
|
4.4
|
91.2
|
1.0
|
|
HD2
|
B:ARG442
|
4.4
|
105.9
|
1.0
|
|
HB3
|
C:PRO233
|
4.4
|
90.6
|
1.0
|
|
NZ
|
C:LYS237
|
4.4
|
93.5
|
1.0
|
|
O3B
|
C:ADP1001
|
4.4
|
93.4
|
1.0
|
|
HA
|
B:GLN410
|
4.4
|
100.8
|
1.0
|
|
HZ2
|
C:LYS237
|
4.4
|
91.1
|
1.0
|
|
OE2
|
C:GLU262
|
4.5
|
110.0
|
1.0
|
|
HZ3
|
C:LYS237
|
4.5
|
93.8
|
1.0
|
|
CA
|
C:PRO233
|
4.7
|
90.1
|
1.0
|
|
HA
|
C:SER234
|
4.7
|
90.4
|
1.0
|
|
CD
|
B:ARG442
|
4.7
|
105.8
|
1.0
|
|
HB3
|
B:GLN410
|
4.8
|
98.4
|
1.0
|
|
CE
|
B:LYS440
|
4.8
|
92.1
|
1.0
|
|
HG2
|
C:GLU262
|
4.9
|
109.2
|
1.0
|
|
HZ3
|
B:LYS440
|
5.0
|
97.4
|
1.0
|
|
Aluminium binding site 3 out
of 5 in 9eco
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Aluminium Binding Sites List in 9eco
Aluminium binding site 3 out
of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 3 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Al1004
b:111.0
occ:1.00
|
AL
|
C:ALF1004
|
0.0
|
111.0
|
1.0
|
|
F2
|
C:ALF1004
|
1.8
|
104.2
|
1.0
|
|
F4
|
C:ALF1004
|
1.8
|
105.6
|
1.0
|
|
F3
|
C:ALF1004
|
1.8
|
108.7
|
1.0
|
|
F1
|
C:ALF1004
|
1.8
|
125.3
|
1.0
|
|
O2B
|
D:ADP1001
|
2.0
|
93.9
|
1.0
|
|
HH12
|
C:ARG442
|
2.8
|
104.0
|
1.0
|
|
PB
|
D:ADP1001
|
3.3
|
93.2
|
1.0
|
|
NH1
|
C:ARG442
|
3.4
|
107.2
|
1.0
|
|
HE21
|
D:GLN384
|
3.5
|
92.4
|
1.0
|
|
HH11
|
C:ARG442
|
3.5
|
105.1
|
1.0
|
|
MG
|
D:MG1002
|
3.5
|
86.2
|
1.0
|
|
O1B
|
D:ADP1001
|
3.6
|
102.9
|
1.0
|
|
H
|
D:SER234
|
3.6
|
90.2
|
1.0
|
|
HZ2
|
C:LYS440
|
3.8
|
93.9
|
1.0
|
|
HA
|
D:PRO233
|
3.9
|
87.9
|
1.0
|
|
O3B
|
D:ADP1001
|
4.2
|
91.0
|
1.0
|
|
HZ1
|
C:LYS440
|
4.2
|
94.0
|
1.0
|
|
NE2
|
D:GLN384
|
4.3
|
91.5
|
1.0
|
|
HB3
|
D:PRO233
|
4.3
|
88.8
|
1.0
|
|
O
|
C:GLN410
|
4.3
|
106.0
|
1.0
|
|
O3A
|
D:ADP1001
|
4.4
|
92.7
|
1.0
|
|
NZ
|
C:LYS440
|
4.4
|
93.4
|
1.0
|
|
N
|
D:SER234
|
4.5
|
90.1
|
1.0
|
|
HE22
|
D:GLN384
|
4.5
|
93.9
|
1.0
|
|
HH22
|
C:ARG442
|
4.5
|
98.9
|
1.0
|
|
HZ2
|
D:LYS237
|
4.5
|
99.3
|
1.0
|
|
OE2
|
D:GLU262
|
4.5
|
105.4
|
1.0
|
|
HE3
|
C:LYS440
|
4.6
|
87.9
|
1.0
|
|
CZ
|
C:ARG442
|
4.6
|
102.2
|
1.0
|
|
HG2
|
D:GLU262
|
4.6
|
108.3
|
1.0
|
|
HE3
|
D:LYS237
|
4.7
|
93.9
|
1.0
|
|
HA
|
C:GLN410
|
4.7
|
93.6
|
1.0
|
|
CA
|
D:PRO233
|
4.7
|
84.9
|
1.0
|
|
HG3
|
C:ARG442
|
4.8
|
95.7
|
1.0
|
|
HE2
|
D:LYS237
|
4.8
|
89.5
|
1.0
|
|
O1A
|
D:ADP1001
|
4.8
|
92.9
|
1.0
|
|
HG
|
D:SER234
|
4.8
|
95.5
|
1.0
|
|
NH2
|
C:ARG442
|
5.0
|
100.1
|
1.0
|
|
CB
|
D:PRO233
|
5.0
|
84.0
|
1.0
|
|
HA
|
D:SER234
|
5.0
|
91.7
|
1.0
|
|
Aluminium binding site 4 out
of 5 in 9eco
Go back to
Aluminium Binding Sites List in 9eco
Aluminium binding site 4 out
of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 4 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Al1002
b:111.8
occ:1.00
|
AL
|
E:ALF1002
|
0.0
|
111.8
|
1.0
|
|
F2
|
E:ALF1002
|
1.8
|
106.7
|
1.0
|
|
F4
|
E:ALF1002
|
1.8
|
106.0
|
1.0
|
|
F3
|
E:ALF1002
|
1.8
|
113.1
|
1.0
|
|
F1
|
E:ALF1002
|
1.8
|
114.3
|
1.0
|
|
O2B
|
E:ADP1001
|
2.1
|
102.0
|
1.0
|
|
PB
|
E:ADP1001
|
3.2
|
102.7
|
1.0
|
|
HE21
|
E:GLN384
|
3.2
|
90.0
|
1.0
|
|
HH11
|
D:ARG442
|
3.2
|
100.8
|
1.0
|
|
HZ2
|
E:LYS237
|
3.5
|
92.8
|
1.0
|
|
MG
|
E:MG1003
|
3.6
|
93.2
|
1.0
|
|
O1B
|
E:ADP1001
|
3.6
|
101.0
|
1.0
|
|
H
|
E:SER234
|
3.6
|
91.4
|
1.0
|
|
O3B
|
E:ADP1001
|
3.8
|
92.8
|
1.0
|
|
NH1
|
D:ARG442
|
3.9
|
103.7
|
1.0
|
|
HH12
|
D:ARG442
|
3.9
|
103.4
|
1.0
|
|
HA
|
E:PRO233
|
3.9
|
88.4
|
1.0
|
|
NE2
|
E:GLN384
|
4.0
|
90.2
|
1.0
|
|
HZ2
|
D:LYS440
|
4.0
|
95.4
|
1.0
|
|
HE22
|
E:GLN384
|
4.1
|
91.6
|
1.0
|
|
HZ3
|
E:LYS237
|
4.2
|
92.2
|
1.0
|
|
NZ
|
E:LYS237
|
4.2
|
94.8
|
1.0
|
|
OE2
|
E:GLU262
|
4.2
|
112.8
|
1.0
|
|
HE2
|
E:LYS237
|
4.2
|
90.4
|
1.0
|
|
OE1
|
E:GLU262
|
4.3
|
116.1
|
1.0
|
|
N
|
E:SER234
|
4.4
|
93.3
|
1.0
|
|
O
|
D:GLN410
|
4.4
|
105.7
|
1.0
|
|
HD3
|
D:ARG442
|
4.5
|
96.6
|
1.0
|
|
HZ1
|
D:LYS440
|
4.5
|
95.3
|
1.0
|
|
HB3
|
E:PRO233
|
4.5
|
88.4
|
1.0
|
|
O3A
|
E:ADP1001
|
4.5
|
97.9
|
1.0
|
|
O1A
|
E:ADP1001
|
4.5
|
94.2
|
1.0
|
|
HA
|
D:GLN410
|
4.5
|
97.8
|
1.0
|
|
NZ
|
D:LYS440
|
4.6
|
93.5
|
1.0
|
|
CD
|
E:GLU262
|
4.7
|
116.6
|
1.0
|
|
CE
|
E:LYS237
|
4.7
|
90.9
|
1.0
|
|
HE3
|
D:LYS440
|
4.7
|
90.9
|
1.0
|
|
HD2
|
D:ARG442
|
4.7
|
96.3
|
1.0
|
|
CA
|
E:PRO233
|
4.8
|
88.2
|
1.0
|
|
HZ1
|
E:LYS237
|
4.9
|
92.3
|
1.0
|
|
HB3
|
D:GLN410
|
4.9
|
95.6
|
1.0
|
|
HA
|
E:SER234
|
4.9
|
93.1
|
1.0
|
|
HE3
|
E:LYS237
|
4.9
|
90.3
|
1.0
|
|
Aluminium binding site 5 out
of 5 in 9eco
Go back to
Aluminium Binding Sites List in 9eco
Aluminium binding site 5 out
of 5 in the E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4
 Mono view
 Stereo pair view
|
|
A full contact list of Aluminium with other atoms in the Al binding
site number 5 of E. Coli Dnab Bound to Three Dnag C-Terminal Domains, Ssdna, Adp and ALF4 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Al1002
b:122.9
occ:1.00
|
AL
|
F:ALF1002
|
0.0
|
122.9
|
1.0
|
|
F2
|
F:ALF1002
|
1.8
|
123.0
|
1.0
|
|
F4
|
F:ALF1002
|
1.8
|
124.8
|
1.0
|
|
F1
|
F:ALF1002
|
1.8
|
124.3
|
1.0
|
|
F3
|
F:ALF1002
|
1.8
|
116.2
|
1.0
|
|
O2B
|
F:ADP1001
|
2.0
|
112.2
|
1.0
|
|
PB
|
F:ADP1001
|
3.3
|
119.2
|
1.0
|
|
H
|
F:SER234
|
3.5
|
106.5
|
1.0
|
|
HZ2
|
E:LYS440
|
3.5
|
104.0
|
1.0
|
|
MG
|
F:MG1003
|
3.6
|
104.5
|
1.0
|
|
HE21
|
F:GLN384
|
3.6
|
111.1
|
1.0
|
|
O1B
|
F:ADP1001
|
3.7
|
123.0
|
1.0
|
|
HE
|
E:ARG442
|
3.8
|
109.3
|
1.0
|
|
HA
|
F:PRO233
|
3.9
|
108.0
|
1.0
|
|
HH21
|
E:ARG442
|
3.9
|
111.7
|
1.0
|
|
O3A
|
F:ADP1001
|
4.0
|
111.0
|
1.0
|
|
HZ1
|
E:LYS440
|
4.1
|
103.0
|
1.0
|
|
OE1
|
F:GLU262
|
4.1
|
130.5
|
1.0
|
|
NZ
|
E:LYS440
|
4.2
|
102.8
|
1.0
|
|
O
|
E:GLN410
|
4.2
|
116.3
|
1.0
|
|
HE3
|
E:LYS440
|
4.2
|
99.2
|
1.0
|
|
HB3
|
F:PRO233
|
4.3
|
106.3
|
1.0
|
|
NE
|
E:ARG442
|
4.4
|
109.5
|
1.0
|
|
N
|
F:SER234
|
4.4
|
105.8
|
1.0
|
|
NE2
|
F:GLN384
|
4.4
|
112.1
|
1.0
|
|
HA
|
E:GLN410
|
4.4
|
106.5
|
1.0
|
|
O3B
|
F:ADP1001
|
4.5
|
115.8
|
1.0
|
|
NH2
|
E:ARG442
|
4.5
|
114.4
|
1.0
|
|
HE22
|
F:GLN384
|
4.6
|
112.1
|
1.0
|
|
O1A
|
F:ADP1001
|
4.7
|
114.5
|
1.0
|
|
HE3
|
F:LYS237
|
4.7
|
108.7
|
1.0
|
|
HG2
|
E:ARG442
|
4.7
|
106.6
|
1.0
|
|
CA
|
F:PRO233
|
4.7
|
107.5
|
1.0
|
|
CE
|
E:LYS440
|
4.8
|
100.4
|
1.0
|
|
CZ
|
E:ARG442
|
4.9
|
113.3
|
1.0
|
|
HA
|
F:SER234
|
4.9
|
108.3
|
1.0
|
|
CD
|
F:GLU262
|
4.9
|
127.0
|
1.0
|
|
HZ3
|
E:LYS440
|
4.9
|
102.9
|
1.0
|
|
OE2
|
F:GLU262
|
5.0
|
124.7
|
1.0
|
|
Reference:
A.J.Oakley,
Z.Q.Xu.
Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Sun Dec 15 09:25:30 2024
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