Aluminium in PDB 3t34: Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State

The structure of Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State, PDB code: 3t34 was solved by L.M.Yan, Y.Y.Ma, Y.N.Sun, Z.Y.Lou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.31 / 2.41
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	53.471, 86.407, 88.485, 90.00, 90.55, 90.00
R / Rfree (%)	23.7 / 28.4

The structure of Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Magnesium	(Mg)	2 atoms
Sodium	(Na)	2 atoms

The binding sites of Aluminium atom in the Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State (pdb code 3t34). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State, PDB code: 3t34:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in the Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State within 5.0Å range: probe atom residue distance (Å) B Occ A:Al1001 b:41.2 occ:1.00 AL A:ALF1001 0.0 41.2 1.0 F4 A:ALF1001 1.8 35.8 1.0 F3 A:ALF1001 1.8 46.9 1.0 F1 A:ALF1001 1.8 53.8 1.0 F2 A:ALF1001 1.8 32.6 1.0 O A:HOH1004 2.1 39.4 1.0 O3B A:GDP1000 2.1 33.5 1.0 NA A:NA1003 3.1 45.0 1.0 PB A:GDP1000 3.5 34.5 1.0 MG A:MG1002 3.6 40.0 1.0 N A:VAL67 3.8 39.5 1.0 O1B A:GDP1000 3.8 39.7 1.0 N A:THR68 3.9 41.4 1.0 O A:HOH1007 4.0 36.6 1.0 N A:SER44 4.1 39.1 1.0 O A:HOH1005 4.1 35.8 1.0 O A:THR68 4.2 41.8 1.0 O2B A:GDP1000 4.2 36.9 1.0 NZ A:LYS47 4.3 32.3 1.0 N A:GLY145 4.3 44.3 1.0 CB A:THR68 4.3 38.0 1.0 O A:GLY65 4.3 44.9 1.0 CA A:THR68 4.5 36.8 1.0 CA A:VAL67 4.6 39.4 1.0 OG1 A:THR68 4.6 39.8 1.0 CA A:ILE66 4.6 44.1 1.0 CG A:GLN43 4.7 43.0 1.0 C A:ILE66 4.7 46.3 1.0 CA A:SER44 4.7 35.6 1.0 C A:VAL67 4.7 39.4 1.0 O A:HOH1006 4.7 38.2 1.0 O3A A:GDP1000 4.7 39.2 1.0 CA A:GLN43 4.8 44.0 1.0 OG A:SER44 4.8 33.0 1.0 C A:THR68 4.8 36.5 1.0 CA A:GLY145 4.9 38.0 1.0 C A:GLN43 4.9 41.8 1.0 CE A:LYS47 4.9 37.9 1.0

Aluminium binding site 2 out of 2 in the Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Arabidopsis Thaliana Dynamin-Related Protein 1A (ATDRP1A) in Prefission State within 5.0Å range: probe atom residue distance (Å) B Occ B:Al1001 b:46.4 occ:1.00 AL B:ALF1001 0.0 46.4 1.0 F3 B:ALF1001 1.8 60.0 1.0 F1 B:ALF1001 1.8 47.1 1.0 F2 B:ALF1001 1.8 49.8 1.0 F4 B:ALF1001 1.8 46.9 1.0 O3B B:GDP1000 2.2 37.6 1.0 O B:HOH1004 2.2 40.3 1.0 PB B:GDP1000 3.1 38.6 1.0 O2B B:GDP1000 3.3 39.7 1.0 NA B:NA1003 3.5 42.5 1.0 N B:SER44 3.6 33.7 1.0 O1B B:GDP1000 3.6 46.3 1.0 O B:HOH1007 3.8 45.9 1.0 N B:GLY145 3.8 41.7 1.0 MG B:MG1002 3.8 50.6 1.0 NZ B:LYS47 4.0 37.6 1.0 O B:HOH1005 4.1 38.1 1.0 CA B:SER44 4.2 37.9 1.0 CA B:GLY145 4.3 40.5 1.0 CG B:GLN43 4.3 44.9 1.0 CA B:GLN43 4.4 42.3 1.0 CG2 B:VAL67 4.4 56.7 1.0 N B:THR68 4.4 41.0 1.0 C B:GLN43 4.5 37.7 1.0 O3A B:GDP1000 4.5 37.1 1.0 N B:VAL67 4.6 42.9 1.0 O2A B:GDP1000 4.6 43.4 1.0 O B:THR68 4.6 42.2 1.0 CB B:THR68 4.7 45.4 1.0 CE B:LYS47 4.7 48.4 1.0 C B:PRO144 4.8 44.6 1.0 OG B:SER44 4.9 38.9 1.0 O B:GLY65 4.9 44.0 1.0 CB B:GLN43 4.9 37.0 1.0 CA B:PRO144 5.0 46.6 1.0

L.M.Yan, Y.Y.Ma, Y.N.Sun, J.Gao, X.Chen, J.Liu, C.Wang, Z.Rao, Z.Y.Lou. Structural Basis For Mechanochemical Role of Arabidopsis Thaliana Dynamin-Related Protein in Membrane Fission J Mol Cell Biol V. 3 378 2011.
ISSN: ISSN 1674-2788
PubMed: 22107825
DOI: 10.1093/JMCB/MJR032