Aluminium in PDB 7nvm: Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound

The structure of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound also contains other interesting chemical elements:

Fluorine	(F)	48 atoms
Magnesium	(Mg)	16 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Aluminium atom in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound (pdb code 7nvm). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 16 binding sites of Aluminium where determined in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound, PDB code: 7nvm:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Aluminium binding site 1 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ A:Al603 b:55.7 occ:1.00 AL A:AF3603 0.0 55.7 1.0 F3 A:AF3603 1.6 62.6 1.0 F2 A:AF3603 1.6 47.6 1.0 F1 A:AF3603 1.6 58.2 1.0 O2B A:ADP601 2.5 194.1 1.0 O3B A:ADP601 2.7 161.5 1.0 OG1 A:THR90 2.9 66.3 1.0 PB A:ADP601 3.2 189.6 1.0 NZ A:LYS159 3.6 68.3 1.0 OD1 A:ASP88 3.8 67.8 1.0 OD2 A:ASP394 3.8 69.1 1.0 OD1 A:ASP57 3.8 68.4 1.0 MG A:MG602 3.9 78.9 1.0 OG1 A:THR91 3.9 65.9 1.0 O3A A:ADP601 3.9 202.8 1.0 N A:THR90 4.1 66.3 1.0 N A:GLY58 4.2 66.7 1.0 CB A:THR90 4.2 66.3 1.0 N A:THR91 4.4 65.9 1.0 CA A:ASP57 4.4 68.4 1.0 O A:HOH701 4.5 30.0 1.0 N A:GLY89 4.5 66.4 1.0 O1B A:ADP601 4.5 179.6 1.0 O A:HOH702 4.5 30.0 1.0 CG A:ASP57 4.5 68.4 1.0 CE A:LYS159 4.5 68.3 1.0 CA A:THR90 4.6 66.3 1.0 CG A:ASP394 4.7 69.1 1.0 CG2 A:THR90 4.8 66.3 1.0 C A:ASP57 4.8 68.4 1.0 CB A:THR91 4.9 65.9 1.0 O A:ASN56 4.9 68.3 1.0 C A:THR90 4.9 66.3 1.0 CG A:ASP88 5.0 67.8 1.0 C A:GLY89 5.0 66.4 1.0

Aluminium binding site 2 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ B:Al603 b:55.7 occ:1.00 AL B:AF3603 0.0 55.7 1.0 F2 B:AF3603 1.6 47.6 1.0 F3 B:AF3603 1.6 62.6 1.0 F1 B:AF3603 1.6 58.2 1.0 O2B B:ADP601 2.4 179.6 1.0 OD1 B:ASP66 3.1 68.6 1.0 OG1 B:THR99 3.2 66.7 1.0 O1B B:ADP601 3.3 194.1 1.0 PB B:ADP601 3.4 189.6 1.0 OD2 B:ASP392 3.4 69.5 1.0 NZ B:LYS170 3.5 68.5 1.0 MG B:MG602 3.5 78.9 1.0 OD1 B:ASP97 3.9 68.1 1.0 CE B:LYS170 4.0 68.5 1.0 O1A B:ADP601 4.1 177.2 1.0 CG B:ASP66 4.1 68.6 1.0 OG1 B:THR100 4.3 66.2 1.0 N B:THR99 4.3 66.7 1.0 CB B:THR99 4.3 66.7 1.0 CG B:ASP392 4.4 69.5 1.0 O3A B:ADP601 4.5 202.8 1.0 O3B B:ADP601 4.5 161.5 1.0 CA B:ASP66 4.5 68.6 1.0 CG2 B:THR99 4.5 66.7 1.0 N B:GLY98 4.5 66.7 1.0 N B:GLY67 4.5 67.2 1.0 PA B:ADP601 4.6 210.3 1.0 CA B:ASP97 4.6 68.1 1.0 N B:THR100 4.7 66.2 1.0 CG B:ASP97 4.7 68.1 1.0 O B:GLY96 4.7 68.7 1.0 O B:HOH702 4.8 30.0 1.0 OD1 B:ASP392 4.8 69.5 1.0 O2A B:ADP601 4.8 200.0 1.0 OD2 B:ASP66 4.8 68.6 1.0 CA B:THR99 4.8 66.7 1.0 CB B:ASP66 4.9 68.6 1.0

Aluminium binding site 3 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ D:Al603 b:55.7 occ:1.00 AL D:AF3603 0.0 55.7 1.0 F1 D:AF3603 1.6 58.2 1.0 F3 D:AF3603 1.6 62.6 1.0 F2 D:AF3603 1.6 47.6 1.0 O3B D:ADP601 2.4 179.6 1.0 O2B D:ADP601 2.9 194.1 1.0 PB D:ADP601 3.1 189.6 1.0 OD1 D:ASP73 3.2 69.2 1.0 NZ D:LYS174 3.3 68.4 1.0 OD2 D:ASP407 3.3 71.0 1.0 MG D:MG602 3.5 78.9 1.0 OG1 D:THR106 3.9 67.4 1.0 O1A D:ADP601 3.9 177.2 1.0 CE D:LYS174 3.9 68.4 1.0 OD1 D:ASP104 4.1 70.1 1.0 CG D:ASP73 4.2 69.2 1.0 O1B D:ADP601 4.3 161.5 1.0 O3A D:ADP601 4.3 202.8 1.0 CG D:ASP407 4.4 71.0 1.0 N D:GLY105 4.4 67.8 1.0 PA D:ADP601 4.5 210.3 1.0 CA D:ASP73 4.5 69.2 1.0 N D:THR106 4.6 67.4 1.0 OG1 D:THR107 4.6 65.9 1.0 N D:GLY74 4.7 68.1 1.0 O D:ASN72 4.7 68.1 1.0 O D:HOH701 4.8 30.0 1.0 O2A D:ADP601 4.8 200.0 1.0 OD2 D:ASP73 4.8 69.2 1.0 OD1 D:ASP407 4.9 71.0 1.0 CB D:ASP73 4.9 69.2 1.0 CA D:ASP104 5.0 70.1 1.0

Aluminium binding site 4 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ E:Al603 b:55.7 occ:1.00 AL E:AF3603 0.0 55.7 1.0 F1 E:AF3603 1.6 58.2 1.0 F3 E:AF3603 1.6 62.6 1.0 F2 E:AF3603 1.6 47.6 1.0 O3B E:ADP601 2.5 194.1 1.0 OD1 E:ASP73 3.0 68.9 1.0 OG1 E:THR106 3.0 67.5 1.0 OD2 E:ASP404 3.6 69.8 1.0 O3A E:ADP601 3.6 202.8 1.0 OD1 E:ASP104 3.6 68.7 1.0 PB E:ADP601 3.6 189.6 1.0 NZ E:LYS176 3.9 69.3 1.0 MG E:MG602 3.9 78.9 1.0 CG E:ASP73 3.9 68.9 1.0 CA E:ASP73 4.1 68.9 1.0 O2B E:ADP601 4.2 179.6 1.0 N E:THR106 4.2 67.5 1.0 N E:GLY74 4.3 67.8 1.0 CB E:THR106 4.3 67.5 1.0 N E:GLY105 4.4 67.4 1.0 OG1 E:THR107 4.4 67.2 1.0 CE E:LYS176 4.4 69.3 1.0 CG2 E:THR106 4.6 67.5 1.0 CB E:ASP73 4.6 68.9 1.0 CG E:ASP404 4.6 69.8 1.0 N E:THR107 4.7 67.2 1.0 OD2 E:ASP73 4.7 68.9 1.0 C E:ASP73 4.7 68.9 1.0 CA E:THR106 4.8 67.5 1.0 O E:ASN72 4.8 68.9 1.0 CG E:ASP104 4.8 68.7 1.0 CA E:ASP104 4.8 68.7 1.0 O E:HOH701 4.9 30.0 1.0 O1B E:ADP601 4.9 161.5 1.0 PA E:ADP601 4.9 210.3 1.0

Aluminium binding site 5 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ G:Al603 b:55.7 occ:1.00 AL G:AF3603 0.0 55.7 1.0 F1 G:AF3603 1.6 58.2 1.0 F3 G:AF3603 1.6 62.6 1.0 F2 G:AF3603 1.6 47.6 1.0 O1B G:ADP601 2.3 194.1 1.0 OD1 G:ASP62 3.3 68.4 1.0 CE G:LYS163 3.5 67.6 1.0 PB G:ADP601 3.6 189.6 1.0 OD1 G:ASP93 3.6 68.1 1.0 OG1 G:THR95 3.6 67.1 1.0 OD2 G:ASP393 3.7 69.1 1.0 O3A G:ADP601 3.8 202.8 1.0 CG G:ASP62 3.9 68.4 1.0 NZ G:LYS163 4.0 67.6 1.0 N G:GLY63 4.2 67.0 1.0 O3B G:ADP601 4.2 161.5 1.0 CA G:ASP62 4.2 68.4 1.0 MG G:MG602 4.3 78.9 1.0 O G:HOH701 4.3 30.0 1.0 O2A G:ADP601 4.3 200.0 1.0 OD2 G:ASP62 4.5 68.4 1.0 N G:GLY94 4.6 67.0 1.0 N G:THR95 4.6 67.1 1.0 PA G:ADP601 4.6 210.3 1.0 CB G:ASP62 4.6 68.4 1.0 CG G:ASP393 4.7 69.1 1.0 O2B G:ADP601 4.7 179.6 1.0 C G:ASP62 4.8 68.4 1.0 CG G:ASP93 4.8 68.1 1.0 CD G:LYS163 4.8 67.6 1.0 CG2 G:THR96 4.8 66.4 1.0 CB G:THR95 4.9 67.1 1.0 O G:ASN61 4.9 68.1 1.0 CA G:ASP93 5.0 68.1 1.0

Aluminium binding site 6 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ H:Al603 b:55.7 occ:1.00 AL H:AF3603 0.0 55.7 1.0 F2 H:AF3603 1.6 47.6 1.0 F3 H:AF3603 1.6 62.6 1.0 F1 H:AF3603 1.6 58.2 1.0 O3B H:ADP601 2.5 194.1 1.0 OG1 H:THR94 3.2 66.0 1.0 NZ H:LYS166 3.6 67.3 1.0 O3A H:ADP601 3.7 202.8 1.0 PB H:ADP601 3.7 189.6 1.0 N H:GLY62 3.8 66.4 1.0 OG1 H:THR95 3.9 65.4 1.0 CA H:ASP61 3.9 67.0 1.0 OD2 H:ASP391 4.1 68.5 1.0 O H:ASN60 4.1 67.0 1.0 OD1 H:ASP92 4.1 67.8 1.0 MG H:MG602 4.3 78.9 1.0 OD2 H:ASP61 4.4 67.0 1.0 CG H:ASP61 4.4 67.0 1.0 O2A H:ADP601 4.4 177.2 1.0 C H:ASP61 4.4 67.0 1.0 N H:THR95 4.5 65.4 1.0 O2B H:ADP601 4.6 179.6 1.0 CB H:THR94 4.6 66.0 1.0 CB H:ASP61 4.6 67.0 1.0 N H:THR94 4.6 66.0 1.0 PA H:ADP601 4.7 210.3 1.0 OD1 H:ASN60 4.7 67.0 1.0 OD1 H:ASP61 4.8 67.0 1.0 N H:ASP61 4.8 67.0 1.0 C H:ASN60 4.8 67.0 1.0 CB H:THR95 4.8 65.4 1.0 O1B H:ADP601 4.9 161.5 1.0 CE H:LYS166 4.9 67.3 1.0 CA H:GLY62 4.9 66.4 1.0 O H:HOH701 5.0 30.0 1.0

Aluminium binding site 7 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 7 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ Q:Al603 b:55.7 occ:1.00 AL Q:AF3603 0.0 55.7 1.0 F1 Q:AF3603 1.6 58.2 1.0 F2 Q:AF3603 1.6 47.6 1.0 F3 Q:AF3603 1.6 62.6 1.0 O1B Q:ADP601 2.3 179.6 1.0 OG1 Q:THR101 3.1 70.7 1.0 OD1 Q:ASP68 3.5 72.3 1.0 OD1 Q:ASP99 3.6 72.2 1.0 PB Q:ADP601 3.7 189.6 1.0 N Q:THR101 4.0 70.7 1.0 N Q:GLY100 4.0 71.1 1.0 O3B Q:ADP601 4.3 161.5 1.0 N Q:ALA69 4.3 71.0 1.0 CB Q:THR101 4.3 70.7 1.0 CE Q:LYS171 4.3 70.4 1.0 O2A Q:ADP601 4.3 177.2 1.0 MG Q:MG602 4.4 78.9 1.0 N Q:ASN102 4.4 69.7 1.0 CG Q:ASP68 4.4 72.3 1.0 O Q:HOH701 4.4 30.0 1.0 OD2 Q:ASP394 4.4 71.8 1.0 CG Q:ASP99 4.5 72.2 1.0 O2B Q:ADP601 4.6 194.1 1.0 CA Q:ASP99 4.6 72.2 1.0 CG2 Q:THR101 4.6 70.7 1.0 O3A Q:ADP601 4.6 202.8 1.0 CA Q:THR101 4.6 70.7 1.0 CA Q:ASP68 4.8 72.3 1.0 CB Q:ALA69 4.8 71.0 1.0 C Q:GLY100 4.8 71.1 1.0 CA Q:GLY100 4.8 71.1 1.0 C Q:ASP99 4.8 72.2 1.0 CB Q:ASN102 4.9 69.7 1.0 C Q:ASP68 5.0 72.3 1.0 OD1 Q:ASP394 5.0 71.8 1.0

Aluminium binding site 8 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 8 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ Z:Al603 b:55.7 occ:1.00 AL Z:AF3603 0.0 55.7 1.0 F3 Z:AF3603 1.6 62.6 1.0 F1 Z:AF3603 1.6 58.2 1.0 F2 Z:AF3603 1.6 47.6 1.0 O1B Z:ADP601 2.5 194.1 1.0 OD1 Z:ASP90 3.2 69.6 1.0 OD1 Z:ASP59 3.4 69.5 1.0 NZ Z:LYS159 3.4 69.1 1.0 OG1 Z:THR92 3.4 67.6 1.0 PB Z:ADP601 3.6 189.6 1.0 O3B Z:ADP601 3.7 161.5 1.0 N Z:THR92 3.9 67.6 1.0 N Z:GLY91 3.9 67.6 1.0 OD2 Z:ASP393 4.0 70.8 1.0 O Z:HOH701 4.1 30.0 1.0 CG2 Z:THR92 4.1 67.6 1.0 N Z:GLY60 4.1 67.7 1.0 MG Z:MG602 4.1 78.9 1.0 CG Z:ASP59 4.2 69.5 1.0 CB Z:THR92 4.2 67.6 1.0 CG Z:ASP90 4.3 69.6 1.0 N Z:THR93 4.3 66.9 1.0 CE Z:LYS159 4.3 69.1 1.0 CA Z:ASP90 4.3 69.6 1.0 OG1 Z:THR93 4.4 66.9 1.0 CA Z:THR92 4.5 67.6 1.0 C Z:ASP90 4.6 69.6 1.0 OD2 Z:ASP59 4.6 69.5 1.0 O3A Z:ADP601 4.6 202.8 1.0 O2B Z:ADP601 4.7 179.6 1.0 CA Z:ASP59 4.8 69.5 1.0 C Z:GLY91 4.8 67.6 1.0 CA Z:GLY91 4.8 67.6 1.0 CB Z:ASP90 4.9 69.6 1.0 O Z:GLY89 4.9 69.6 1.0 CA Z:GLY60 4.9 67.7 1.0 C Z:ASP59 5.0 69.5 1.0 C Z:THR92 5.0 67.6 1.0 CB Z:THR93 5.0 66.9 1.0

Aluminium binding site 9 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 9 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ a:Al603 b:55.7 occ:1.00 AL a:AF3603 0.0 55.7 1.0 F3 a:AF3603 1.6 62.6 1.0 F2 a:AF3603 1.6 47.6 1.0 F1 a:AF3603 1.6 58.2 1.0 O2B a:ADP601 2.7 194.1 1.0 O3B a:ADP601 3.1 161.5 1.0 OG1 a:THR90 3.3 66.5 1.0 NZ a:LYS159 3.4 67.9 1.0 PB a:ADP601 3.4 189.6 1.0 OD1 a:ASP88 3.5 67.8 1.0 MG a:MG602 3.6 78.9 1.0 OD2 a:ASP394 3.7 68.5 1.0 OD1 a:ASP57 3.9 68.7 1.0 O3A a:ADP601 3.9 202.8 1.0 OG1 a:THR91 4.1 65.9 1.0 CE a:LYS159 4.2 67.9 1.0 O a:HOH701 4.4 30.0 1.0 CA a:ASP57 4.5 68.7 1.0 N a:GLY58 4.5 67.1 1.0 N a:THR90 4.5 66.5 1.0 CG a:ASP57 4.6 68.7 1.0 N a:GLY89 4.6 66.2 1.0 CB a:THR90 4.7 66.5 1.0 CG a:ASP394 4.7 68.5 1.0 CG a:ASP88 4.7 67.8 1.0 N a:THR91 4.8 65.9 1.0 O1B a:ADP601 4.8 179.6 1.0 O a:ASN56 4.8 68.3 1.0 PA a:ADP601 4.9 210.3 1.0 O a:HOH702 5.0 30.0 1.0

Aluminium binding site 10 out of 16 in the Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 10 of Human Tric Complex in Closed State with Nanobody NB18, Actin and PHLP2A Bound within 5.0Å range: probe atom residue distance (Å) B Occ b:Al603 b:55.7 occ:1.00 AL b:AF3603 0.0 55.7 1.0 F3 b:AF3603 1.6 62.6 1.0 F1 b:AF3603 1.6 58.2 1.0 F2 b:AF3603 1.6 47.6 1.0 O2B b:ADP601 2.4 61.5 1.0 OD1 b:ASP66 2.9 67.4 1.0 NZ b:LYS170 3.4 67.6 1.0 PB b:ADP601 3.5 89.6 1.0 OG1 b:THR99 3.5 65.8 1.0 OD2 b:ASP392 3.5 67.9 1.0 O1B b:ADP601 3.5 94.1 1.0 OD1 b:ASP97 3.8 67.1 1.0 CG b:ASP66 3.8 67.4 1.0 CE b:LYS170 4.0 67.6 1.0 CA b:ASP66 4.2 67.4 1.0 N b:GLY67 4.2 65.8 1.0 O1A b:ADP601 4.3 0.0 1.0 OG1 b:THR100 4.3 65.5 1.0 MG b:MG602 4.4 78.9 1.0 OD2 b:ASP66 4.5 67.4 1.0 N b:THR99 4.5 65.8 1.0 CG b:ASP392 4.5 67.9 1.0 N b:GLY98 4.5 65.6 1.0 O3B b:ADP601 4.6 79.6 1.0 CB b:ASP66 4.6 67.4 1.0 CG b:ASP97 4.6 67.1 1.0 O3A b:ADP601 4.6 2.8 1.0 CA b:ASP97 4.6 67.1 1.0 CB b:THR99 4.6 65.8 1.0 CG2 b:THR99 4.7 65.8 1.0 O b:GLY96 4.7 67.5 1.0 C b:ASP66 4.7 67.4 1.0 PA b:ADP601 4.7 10.3 1.0 N b:THR100 4.8 65.5 1.0 O b:HOH701 4.9 30.0 1.0 OD1 b:ASP392 4.9 67.9 1.0 O b:ASN65 4.9 67.8 1.0 O2A b:ADP601 4.9 77.2 1.0

J.J.Kelly, D.Tranter, E.Pardon, G.Chi, H.Kramer, L.Happonen, K.M.Knee, J.M.Janz, J.Steyaert, C.Bulawa, V.O.Paavilainen, J.T.Huiskonen, W.W.Yue. Snapshots of Actin and Tubulin Folding Inside the Tric Chaperonin. Nat.Struct.Mol.Biol. V. 29 420 2022.
ISSN: ESSN 1545-9985
PubMed: 35449234
DOI: 10.1038/S41594-022-00755-1