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Aluminium in PDB 7t21: E. Coli Dnab Bound to Ssdna and Adp-ALF4

Enzymatic activity of E. Coli Dnab Bound to Ssdna and Adp-ALF4

All present enzymatic activity of E. Coli Dnab Bound to Ssdna and Adp-ALF4:
3.6.4.12;

Other elements in 7t21:

The structure of E. Coli Dnab Bound to Ssdna and Adp-ALF4 also contains other interesting chemical elements:

Fluorine (F) 20 atoms
Magnesium (Mg) 5 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the E. Coli Dnab Bound to Ssdna and Adp-ALF4 (pdb code 7t21). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the E. Coli Dnab Bound to Ssdna and Adp-ALF4, PDB code: 7t21:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5;

Aluminium binding site 1 out of 5 in 7t21

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Aluminium binding site 1 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Al1002

b:215.9
occ:1.00
AL B:ALF1002 0.0 215.9 1.0
F3 B:ALF1002 1.8 215.9 1.0
F2 B:ALF1002 1.8 215.9 1.0
F1 B:ALF1002 1.8 215.9 1.0
F4 B:ALF1002 1.8 216.0 1.0
OE1 B:GLU262 2.0 181.3 1.0
O2B B:ADP1001 2.0 215.9 1.0
MG B:MG1003 2.7 216.0 1.0
CD B:GLU262 2.8 181.3 1.0
OE2 B:GLU262 3.0 181.3 1.0
PB B:ADP1001 3.1 215.9 1.0
O1B B:ADP1001 3.4 215.9 1.0
O2A B:ADP1001 4.0 215.9 1.0
O3B B:ADP1001 4.0 215.9 1.0
CG B:GLU262 4.3 181.3 1.0
NE A:ARG442 4.3 149.4 1.0
O3A B:ADP1001 4.3 215.9 1.0
OG1 B:THR238 4.4 153.2 1.0
N B:SER234 4.5 147.7 1.0
CA B:PRO233 4.6 151.4 1.0
CD A:ARG442 4.6 149.4 1.0
NZ A:LYS440 4.7 157.3 1.0
CZ A:ARG442 4.7 149.4 1.0
PA B:ADP1001 4.8 215.9 1.0
CB B:PRO233 4.8 151.4 1.0
CG A:ARG442 4.9 149.4 1.0
NE2 B:GLN384 4.9 175.9 1.0
CE A:LYS440 4.9 157.3 1.0
NH2 A:ARG442 4.9 149.4 1.0

Aluminium binding site 2 out of 5 in 7t21

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Aluminium binding site 2 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Al1002

b:215.9
occ:1.00
AL C:ALF1002 0.0 215.9 1.0
F3 C:ALF1002 1.8 216.0 1.0
F2 C:ALF1002 1.8 215.9 1.0
F4 C:ALF1002 1.8 215.8 1.0
F1 C:ALF1002 1.8 216.0 1.0
OE1 C:GLU262 2.0 156.5 1.0
O2B C:ADP1001 2.1 215.9 1.0
MG C:MG1003 2.7 215.9 1.0
CD C:GLU262 2.8 156.5 1.0
OE2 C:GLU262 3.0 156.5 1.0
PB C:ADP1001 3.2 215.9 1.0
O3B C:ADP1001 3.4 215.9 1.0
O1A C:ADP1001 4.1 215.9 1.0
O3A C:ADP1001 4.2 215.9 1.0
CG C:GLU262 4.3 156.5 1.0
O1B C:ADP1001 4.3 215.9 1.0
NE2 C:GLN384 4.4 150.8 1.0
OG1 C:THR238 4.4 124.1 1.0
PA C:ADP1001 4.5 216.0 1.0
O2A C:ADP1001 4.5 216.0 1.0
NZ B:LYS440 4.6 173.4 1.0
CA C:PRO233 4.7 118.8 1.0
CB C:PRO233 4.7 118.8 1.0
CB C:GLU262 4.8 156.5 1.0

Aluminium binding site 3 out of 5 in 7t21

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Aluminium binding site 3 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Al1002

b:215.9
occ:1.00
AL D:ALF1002 0.0 215.9 1.0
F2 D:ALF1002 1.8 215.9 1.0
F3 D:ALF1002 1.8 215.9 1.0
F1 D:ALF1002 1.8 215.9 1.0
F4 D:ALF1002 1.8 215.9 1.0
OE1 D:GLU262 2.0 179.0 1.0
O2B D:ADP1001 2.1 215.9 1.0
MG D:MG1003 2.8 215.9 1.0
CD D:GLU262 2.8 179.0 1.0
OE2 D:GLU262 3.1 179.0 1.0
PB D:ADP1001 3.2 215.9 1.0
O3B D:ADP1001 3.4 215.9 1.0
O1A D:ADP1001 3.8 216.0 1.0
O3A D:ADP1001 4.0 216.0 1.0
NE C:ARG442 4.1 167.7 1.0
CG D:GLU262 4.3 179.0 1.0
CZ C:ARG442 4.3 167.7 1.0
N D:SER234 4.3 146.3 1.0
OG1 D:THR238 4.4 144.0 1.0
O1B D:ADP1001 4.4 215.9 1.0
CD C:ARG442 4.5 167.7 1.0
PA D:ADP1001 4.5 215.9 1.0
NH2 C:ARG442 4.5 167.7 1.0
CA D:PRO233 4.6 144.1 1.0
NZ C:LYS440 4.8 164.5 1.0
CB D:PRO233 4.8 144.1 1.0
NH1 C:ARG442 4.8 167.7 1.0
CG C:ARG442 4.9 167.7 1.0
CE C:LYS440 4.9 164.5 1.0

Aluminium binding site 4 out of 5 in 7t21

Go back to Aluminium Binding Sites List in 7t21
Aluminium binding site 4 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Al1002

b:215.9
occ:1.00
AL E:ALF1002 0.0 215.9 1.0
F3 E:ALF1002 1.8 216.0 1.0
F2 E:ALF1002 1.8 215.9 1.0
F4 E:ALF1002 1.8 215.9 1.0
F1 E:ALF1002 1.8 216.0 1.0
OE1 E:GLU262 2.0 175.0 1.0
O2B E:ADP1001 2.1 215.9 1.0
MG E:MG1003 2.7 215.9 1.0
CD E:GLU262 2.8 175.0 1.0
OE2 E:GLU262 3.0 175.0 1.0
PB E:ADP1001 3.2 215.9 1.0
O3B E:ADP1001 3.4 215.9 1.0
O1A E:ADP1001 3.8 216.0 1.0
O3A E:ADP1001 4.1 215.9 1.0
PA E:ADP1001 4.2 216.0 1.0
CG E:GLU262 4.3 175.0 1.0
NZ D:LYS440 4.3 177.3 1.0
O2A E:ADP1001 4.3 216.0 1.0
O1B E:ADP1001 4.3 215.9 1.0
NE2 E:GLN384 4.4 160.4 1.0
OG1 E:THR238 4.4 127.2 1.0
CA E:PRO233 4.6 141.3 1.0
CB E:PRO233 4.6 141.3 1.0
O D:GLN410 4.9 208.9 1.0
N E:SER234 5.0 146.9 1.0

Aluminium binding site 5 out of 5 in 7t21

Go back to Aluminium Binding Sites List in 7t21
Aluminium binding site 5 out of 5 in the E. Coli Dnab Bound to Ssdna and Adp-ALF4


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of E. Coli Dnab Bound to Ssdna and Adp-ALF4 within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Al1002

b:215.9
occ:1.00
AL F:ALF1002 0.0 215.9 1.0
F3 F:ALF1002 1.8 216.0 1.0
F2 F:ALF1002 1.8 215.9 1.0
F1 F:ALF1002 1.8 215.9 1.0
F4 F:ALF1002 1.8 215.9 1.0
OE1 F:GLU262 2.0 125.1 1.0
O1B F:ADP1001 2.1 216.0 1.0
MG F:MG1003 2.7 216.0 1.0
CD F:GLU262 2.8 125.1 1.0
PB F:ADP1001 2.8 215.9 1.0
OE2 F:GLU262 3.0 125.1 1.0
O3B F:ADP1001 3.2 216.0 1.0
O2B F:ADP1001 3.4 215.8 1.0
NE2 F:GLN384 4.2 143.1 1.0
CG F:GLU262 4.2 125.1 1.0
O3A F:ADP1001 4.3 215.9 1.0
NZ E:LYS440 4.4 169.5 1.0
OG1 F:THR238 4.4 105.1 1.0
CB F:PRO233 4.8 122.1 1.0
CA F:PRO233 4.8 122.1 1.0
CZ E:ARG442 4.9 158.0 1.0
NH2 E:ARG442 5.0 158.0 1.0
NE E:ARG442 5.0 158.0 1.0
O E:GLN410 5.0 193.4 1.0

Reference:

A.J.Oakley, Z.Q.Xu. Sequence of Conformation Changes of Dnab Helicase During Dna Unwinding and Priming in Escherichia Coli To Be Published.
Page generated: Sun Jul 6 22:10:44 2025

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