Aluminium in PDB 8eew: Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane

The structure of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane also contains other interesting chemical elements:

Fluorine	(F)	8 atoms
Potassium	(K)	2 atoms
Magnesium	(Mg)	2 atoms

The binding sites of Aluminium atom in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane (pdb code 8eew). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 2 binding sites of Aluminium where determined in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane, PDB code: 8eew:
Jump to Aluminium binding site number: 1; 2;

Aluminium binding site 1 out of 2 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ A:Al1002 b:14.3 occ:1.00 AL A:ALF1002 0.0 14.3 1.0 F3 A:ALF1002 1.8 15.9 1.0 F1 A:ALF1002 1.8 15.2 1.0 F2 A:ALF1002 1.8 15.3 1.0 F4 A:ALF1002 1.8 16.1 1.0 HG2 A:GLN297 2.7 121.5 1.0 O3B A:GDP1001 3.0 9.7 1.0 HG1 A:THR323 3.3 32.5 1.0 HZ2 A:LYS301 3.5 134.2 1.0 H A:THR323 3.6 25.9 1.0 H A:MET322 3.6 24.4 1.0 MG A:MG1003 3.6 7.9 1.0 O2B A:GDP1001 3.6 6.3 1.0 CG A:GLN297 3.7 121.5 1.0 HE21 A:GLN297 3.7 121.5 1.0 HA A:GLN297 3.7 87.2 1.0 O A:GLN297 3.7 87.2 1.0 HZ3 A:LYS301 3.7 134.2 1.0 PB A:GDP1001 3.9 7.8 1.0 H A:GLY401 3.9 89.2 1.0 HA3 A:GLY401 3.9 89.2 1.0 HG3 A:MET321 3.9 31.7 1.0 NZ A:LYS301 4.0 134.2 1.0 HB A:THR323 4.0 32.5 1.0 NE2 A:GLN297 4.1 121.5 1.0 HG3 A:GLN297 4.1 121.5 1.0 OG1 A:THR323 4.1 32.5 1.0 HZ1 A:LYS301 4.1 134.2 1.0 HB2 A:MET322 4.1 33.6 1.0 CD A:GLN297 4.2 121.5 1.0 HA A:MET321 4.3 26.7 1.0 CA A:GLN297 4.4 87.2 1.0 N A:THR323 4.4 25.9 1.0 N A:MET322 4.4 24.4 1.0 C A:GLN297 4.4 87.2 1.0 HG23 A:THR302 4.5 134.1 1.0 HG2 A:LYS301 4.5 134.2 1.0 O1B A:GDP1001 4.5 7.1 1.0 CB A:GLN297 4.5 121.5 1.0 CB A:THR323 4.6 32.5 1.0 N A:GLY401 4.6 89.2 1.0 HE22 A:GLN297 4.7 121.5 1.0 HA2 A:GLY300 4.7 87.7 1.0 CA A:GLY401 4.7 89.2 1.0 K A:K1004 4.8 30.0 1.0 CG A:MET321 4.8 31.7 1.0 HG2 A:MET321 4.8 31.7 1.0 HB2 A:GLN297 4.9 121.5 1.0 H A:LYS301 4.9 90.0 1.0 HG21 A:THR302 5.0 134.1 1.0 H A:GLY300 5.0 87.7 1.0 CB A:MET322 5.0 33.6 1.0

Aluminium binding site 2 out of 2 in the Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Cryoem of the Soluble OPA1 Dimer From the Gdp-Alfx Bound Helical Assembly on A Lipid Membrane within 5.0Å range: probe atom residue distance (Å) B Occ B:Al1002 b:10.9 occ:1.00 AL B:ALF1002 0.0 10.9 1.0 F4 B:ALF1002 1.8 13.6 1.0 F2 B:ALF1002 1.8 12.6 1.0 F3 B:ALF1002 1.8 14.3 1.0 F1 B:ALF1002 1.8 11.9 1.0 HG3 B:MET321 2.3 31.7 1.0 MG B:MG1003 2.4 8.2 1.0 O2B B:GDP1001 2.8 8.5 1.0 O1B B:GDP1001 2.9 5.6 1.0 HD3 B:LYS301 3.1 134.2 1.0 HA B:GLN297 3.1 87.2 1.0 CG B:MET321 3.2 31.7 1.0 PB B:GDP1001 3.3 7.9 1.0 HG2 B:MET321 3.3 31.7 1.0 HA B:MET321 3.4 26.7 1.0 HB B:THR323 3.4 34.1 1.0 H B:GLY401 3.5 89.2 1.0 H B:THR323 3.7 25.9 1.0 O3B B:GDP1001 3.8 8.0 1.0 HE2 B:LYS301 3.9 134.2 1.0 HA3 B:GLY401 4.0 89.2 1.0 CD B:LYS301 4.0 134.2 1.0 CA B:GLN297 4.0 87.2 1.0 HB3 B:LYS301 4.1 134.2 1.0 CA B:MET321 4.1 26.7 1.0 CB B:MET321 4.1 31.7 1.0 O B:ASP296 4.1 90.5 1.0 HE3 B:LYS301 4.1 134.2 1.0 N B:GLY401 4.2 89.2 1.0 H B:MET322 4.2 24.4 1.0 HB2 B:LYS301 4.2 134.2 1.0 CE B:LYS301 4.3 134.2 1.0 CB B:THR323 4.3 34.1 1.0 HB2 B:MET321 4.3 31.7 1.0 HG2 B:GLN297 4.3 121.5 1.0 C B:GLN297 4.4 87.2 1.0 SD B:MET321 4.4 31.7 1.0 N B:THR323 4.5 25.9 1.0 OG1 B:THR323 4.5 34.1 1.0 O B:SER298 4.5 85.1 1.0 HD2 B:LYS301 4.5 134.2 1.0 HA B:PRO400 4.5 90.2 1.0 C B:MET321 4.5 29.2 1.0 N B:MET322 4.5 24.4 1.0 CB B:LYS301 4.6 134.2 1.0 K B:K1004 4.6 30.0 1.0 CA B:GLY401 4.6 89.2 1.0 HB3 B:GLN297 4.6 121.5 1.0 O B:GLN297 4.7 87.2 1.0 CB B:GLN297 4.8 121.5 1.0 O3A B:GDP1001 4.8 7.3 1.0 CG B:LYS301 4.9 134.2 1.0 C B:ASP296 4.9 90.5 1.0 N B:GLN297 4.9 87.2 1.0 CA B:THR323 5.0 22.2 1.0 HB3 B:MET321 5.0 31.7 1.0 HA2 B:GLY401 5.0 89.2 1.0

S.B.Nyenhuis, X.Wu, A.E.Stanton, M.P.Strub, Y.I.Yim, B.Canagarajah, J.E.Hinshaw. OPA1 Helical Structures Give Perspective to Mitochondrial Dysfunction Nature 2023.
ISSN: ESSN 1476-4687