Aluminium in PDB 9b2d: Yeast RAD51-Ssdna Filament

The structure of Yeast RAD51-Ssdna Filament also contains other interesting chemical elements:

Magnesium	(Mg)	6 atoms
Fluorine	(F)	18 atoms

The binding sites of Aluminium atom in the Yeast RAD51-Ssdna Filament (pdb code 9b2d). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 6 binding sites of Aluminium where determined in the Yeast RAD51-Ssdna Filament, PDB code: 9b2d:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6;

Aluminium binding site 1 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ C:Al502 b:21.0 occ:1.00 AL C:AF3502 0.0 21.0 1.0 F3 C:AF3502 1.6 13.8 1.0 F2 C:AF3502 1.6 17.7 1.0 F1 C:AF3502 1.6 18.0 1.0 OG C:SER192 1.7 4.8 1.0 O2B C:ADP501 2.7 6.0 1.0 CB C:SER192 3.0 1.6 1.0 OG1 C:THR223 3.8 15.8 1.0 PB C:ADP501 3.9 0.0 1.0 OD2 C:ASP280 4.0 9.1 1.0 OD1 C:ASP280 4.1 21.1 1.0 O1B C:ADP501 4.1 20.7 1.0 CA C:SER192 4.1 5.3 1.0 MG C:MG503 4.2 6.9 1.0 N C:SER192 4.2 4.3 1.0 O1A C:ADP501 4.4 12.1 1.0 CG C:ASP280 4.5 11.2 1.0 CB C:THR223 4.5 13.6 1.0 OE1 C:GLU221 4.7 14.5 1.0 O3A C:ADP501 4.7 11.7 1.0 CG2 C:THR223 4.8 13.7 1.0 PA C:ADP501 4.9 1.9 1.0

Aluminium binding site 2 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ D:Al502 b:35.5 occ:1.00 AL D:AF3502 0.0 35.5 1.0 F1 D:AF3502 1.6 23.1 1.0 F3 D:AF3502 1.6 29.8 1.0 F2 D:AF3502 1.6 25.2 1.0 OG D:SER192 1.7 14.3 1.0 O2B D:ADP501 2.8 9.5 1.0 CB D:SER192 3.0 10.9 1.0 OG1 D:THR223 3.8 22.9 1.0 PB D:ADP501 4.0 4.7 1.0 OD2 D:ASP280 4.1 17.1 1.0 O3B D:ADP501 4.1 24.8 1.0 CA D:SER192 4.1 4.7 1.0 MG D:MG503 4.2 11.0 1.0 N D:SER192 4.2 10.0 1.0 OD1 D:ASP280 4.2 22.0 1.0 O1A D:ADP501 4.3 15.8 1.0 CB D:THR223 4.5 19.8 1.0 CG D:ASP280 4.6 11.8 1.0 O3A D:ADP501 4.7 8.0 1.0 OE1 D:GLU221 4.7 28.0 1.0 CG2 D:THR223 4.8 21.6 1.0 PA D:ADP501 4.8 5.3 1.0 O2A D:ADP501 4.9 19.4 1.0

Aluminium binding site 3 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ E:Al502 b:26.8 occ:1.00 AL E:AF3502 0.0 26.8 1.0 F1 E:AF3502 1.6 20.2 1.0 F3 E:AF3502 1.6 20.4 1.0 F2 E:AF3502 1.6 20.8 1.0 OG E:SER192 1.7 13.4 1.0 O2B E:ADP501 2.7 10.1 1.0 CB E:SER192 3.0 6.6 1.0 OG1 E:THR223 3.8 21.0 1.0 PB E:ADP501 4.0 0.0 1.0 OD2 E:ASP280 4.0 17.2 1.0 CA E:SER192 4.1 7.4 1.0 O1B E:ADP501 4.1 26.5 1.0 OD1 E:ASP280 4.2 25.3 1.0 N E:SER192 4.2 7.4 1.0 MG E:MG503 4.2 1.8 1.0 O1A E:ADP501 4.3 17.8 1.0 CB E:THR223 4.4 18.7 1.0 CG E:ASP280 4.5 8.1 1.0 OE1 E:GLU221 4.6 28.1 1.0 CG2 E:THR223 4.7 20.3 1.0 O3A E:ADP501 4.7 10.3 1.0 PA E:ADP501 4.8 8.9 1.0 O2A E:ADP501 4.9 18.8 1.0

Aluminium binding site 4 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ F:Al502 b:29.8 occ:1.00 AL F:AF3502 0.0 29.8 1.0 F1 F:AF3502 1.6 24.5 1.0 F3 F:AF3502 1.6 28.5 1.0 F2 F:AF3502 1.6 37.0 1.0 OG F:SER192 2.8 16.4 1.0 O2B F:ADP501 2.9 15.3 1.0 MG F:MG503 3.7 16.4 1.0 CB F:SER192 3.8 17.3 1.0 O3B F:ADP501 3.8 31.0 1.0 OG1 F:THR223 3.9 28.6 1.0 PB F:ADP501 3.9 8.8 1.0 OE1 F:GLU221 4.3 27.3 1.0 OD2 F:ASP280 4.4 18.6 1.0 CB F:THR223 4.4 30.4 1.0 CG2 F:THR223 4.4 26.2 1.0 OD1 F:ASP280 4.5 30.8 1.0 O1A F:ADP501 4.5 22.1 1.0 O3A F:ADP501 4.8 17.1 1.0 CA F:SER192 4.8 14.9 1.0 N F:SER192 4.9 13.2 1.0 CG F:ASP280 4.9 15.9 1.0

Aluminium binding site 5 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ A:Al502 b:31.9 occ:1.00 AL A:AF3502 0.0 31.9 1.0 F1 A:AF3502 1.6 16.3 1.0 F3 A:AF3502 1.6 19.4 1.0 F2 A:AF3502 1.6 21.6 1.0 O2B A:ADP501 2.7 16.1 1.0 OG A:SER192 3.0 10.0 1.0 CB A:SER192 3.6 13.8 1.0 MG A:MG503 3.8 15.3 1.0 PB A:ADP501 3.9 0.0 1.0 OG1 A:THR223 3.9 13.3 1.0 O1B A:ADP501 4.0 34.2 1.0 OD2 A:ASP280 4.2 13.0 1.0 OD1 A:ASP280 4.2 17.6 1.0 OE1 A:GLU221 4.4 20.9 1.0 CB A:THR223 4.5 14.4 1.0 CG2 A:THR223 4.5 9.7 1.0 O1A A:ADP501 4.6 24.1 1.0 CG A:ASP280 4.6 6.9 1.0 CA A:SER192 4.7 9.8 1.0 N A:SER192 4.7 10.2 1.0 O3A A:ADP501 4.8 24.0 1.0 CD A:GLU221 5.0 18.4 1.0

Aluminium binding site 6 out of 6 in the Yeast RAD51-Ssdna Filament


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Yeast RAD51-Ssdna Filament within 5.0Å range: probe atom residue distance (Å) B Occ B:Al502 b:44.7 occ:1.00 AL B:AF3502 0.0 44.7 1.0 F2 B:AF3502 1.6 33.3 1.0 F1 B:AF3502 1.6 26.6 1.0 F3 B:AF3502 1.6 27.7 1.0 OG B:SER192 1.7 15.4 1.0 O2B B:ADP501 2.6 16.4 1.0 CB B:SER192 3.0 9.9 1.0 PB B:ADP501 3.8 0.0 1.0 OG1 B:THR223 4.0 18.4 1.0 CA B:SER192 4.1 2.0 1.0 O1B B:ADP501 4.1 25.7 1.0 N B:SER192 4.1 5.3 1.0 OD1 B:ASP280 4.1 20.7 1.0 OD2 B:ASP280 4.2 24.3 1.0 MG B:MG503 4.2 3.7 1.0 O1A B:ADP501 4.5 23.8 1.0 CG B:ASP280 4.5 18.3 1.0 OE1 B:GLU221 4.6 30.4 1.0 CB B:THR223 4.6 19.0 1.0 O3A B:ADP501 4.7 15.7 1.0 CG2 B:THR223 4.9 21.6 1.0 PA B:ADP501 4.9 9.3 1.0 O3B B:ADP501 4.9 8.2 1.0 O2A B:ADP501 5.0 15.6 1.0

J.Liu, S.Gore, W.-D.Heyer. Yeast RAD51-Ssdna Filament To Be Published.