Aluminium in PDB 9ed3: Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride

The structure of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride also contains other interesting chemical elements:

Fluorine	(F)	18 atoms
Magnesium	(Mg)	6 atoms

The binding sites of Aluminium atom in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride (pdb code 9ed3). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 6 binding sites of Aluminium where determined in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride, PDB code: 9ed3:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5; 6;

Aluminium binding site 1 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ A:Al502 b:75.6 occ:1.00 AL A:AF3502 0.0 75.6 1.0 F1 A:AF3502 1.6 59.0 1.0 F2 A:AF3502 1.6 56.4 1.0 F3 A:AF3502 1.6 70.0 1.0 CB A:SER192 1.7 40.9 1.0 OG A:SER192 1.7 56.4 1.0 O2B A:ADP501 3.0 29.5 1.0 CA A:SER192 3.0 26.8 1.0 N A:SER192 3.6 20.9 1.0 OD2 A:ASP280 3.8 28.5 1.0 O1A A:ADP501 4.0 37.7 1.0 OG1 A:THR223 4.0 41.2 1.0 C A:SER192 4.2 29.9 1.0 O2A A:ADP501 4.3 43.3 1.0 PB A:ADP501 4.4 28.6 1.0 OD1 A:ASP280 4.5 50.8 1.0 PA A:ADP501 4.5 28.0 1.0 CG A:ASP280 4.6 43.0 1.0 CB A:THR223 4.6 44.8 1.0 O A:SER192 4.8 32.3 1.0 O A:THR223 4.8 53.2 1.0 N A:GLN193 4.9 30.7 1.0 C A:LYS191 4.9 24.9 1.0 O3A A:ADP501 5.0 21.4 1.0

Aluminium binding site 2 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ C:Al502 b:46.7 occ:1.00 AL C:AF3502 0.0 46.7 1.0 F3 C:AF3502 1.6 33.1 1.0 F2 C:AF3502 1.6 37.3 1.0 F1 C:AF3502 1.6 54.9 1.0 OG C:SER192 1.7 31.2 1.0 O2B C:ADP501 2.6 29.6 1.0 CB C:SER192 2.7 28.1 1.0 OD2 C:ASP280 3.6 35.9 1.0 OD1 C:ASP280 3.8 40.0 1.0 CA C:SER192 3.8 15.5 1.0 OE1 C:GLU221 3.9 41.9 1.0 N C:SER192 4.0 27.7 1.0 PB C:ADP501 4.0 21.0 1.0 OG1 C:THR223 4.1 40.9 1.0 CG C:ASP280 4.1 37.2 1.0 O2A C:ADP501 4.3 28.0 1.0 O3B C:ADP501 4.5 40.4 1.0 MG C:MG503 4.6 13.3 1.0 O3A C:ADP501 4.8 26.0 1.0 CD C:GLU221 4.9 41.9 1.0

Aluminium binding site 3 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ D:Al502 b:46.5 occ:1.00 AL D:AF3502 0.0 46.5 1.0 F2 D:AF3502 1.6 42.3 1.0 F3 D:AF3502 1.6 46.0 1.0 F1 D:AF3502 1.6 31.4 1.0 O2B D:ADP501 2.7 31.4 1.0 OD2 D:ASP280 3.7 38.5 1.0 CB D:SER192 3.8 17.6 1.0 OE1 D:GLU221 3.8 47.5 1.0 PB D:ADP501 3.9 17.2 1.0 O3B D:ADP501 3.9 40.4 1.0 MG D:MG503 4.0 15.1 1.0 OG1 D:THR223 4.1 36.8 1.0 OG D:SER192 4.4 42.9 1.0 CD D:GLU221 4.5 41.0 1.0 CG D:ASP280 4.6 37.4 1.0 OD1 D:ASP280 4.7 38.3 1.0 N D:SER192 4.8 19.4 1.0 CB D:THR223 4.8 43.4 1.0 OE2 D:GLU221 4.8 40.0 1.0 CA D:SER192 4.9 19.7 1.0 O3A D:ADP501 4.9 23.2 1.0 CG2 D:THR223 4.9 38.0 1.0 O2A D:ADP501 4.9 23.2 1.0

Aluminium binding site 4 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ E:Al502 b:58.2 occ:1.00 AL E:AF3502 0.0 58.2 1.0 F2 E:AF3502 1.6 45.6 1.0 F1 E:AF3502 1.6 44.1 1.0 F3 E:AF3502 1.6 48.0 1.0 OG E:SER192 1.7 33.4 1.0 O2B E:ADP501 2.7 30.6 1.0 CB E:SER192 2.9 27.9 1.0 OG1 E:THR223 3.8 37.5 1.0 PB E:ADP501 3.9 31.0 1.0 OD1 E:ASP280 4.0 36.5 1.0 CA E:SER192 4.0 23.6 1.0 O3B E:ADP501 4.1 44.3 1.0 N E:SER192 4.2 25.8 1.0 CB E:THR223 4.3 35.5 1.0 O2A E:ADP501 4.5 42.9 1.0 CG E:ASP280 4.5 39.4 1.0 OD2 E:ASP280 4.6 42.8 1.0 CG2 E:THR223 4.6 33.5 1.0 O1A E:ADP501 4.7 26.3 1.0 MG E:MG503 4.7 14.8 1.0 PA E:ADP501 4.8 20.8 1.0 O3A E:ADP501 4.9 26.4 1.0

Aluminium binding site 5 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ F:Al502 b:59.2 occ:1.00 AL F:AF3502 0.0 59.2 1.0 CB F:SER192 1.5 46.0 1.0 F1 F:AF3502 1.6 34.5 1.0 F3 F:AF3502 1.6 68.4 1.0 F2 F:AF3502 1.6 56.3 1.0 OG F:SER192 1.7 59.0 1.0 O2B F:ADP501 2.8 44.7 1.0 CA F:SER192 2.9 35.0 1.0 OD2 F:ASP280 3.3 42.4 1.0 N F:SER192 3.5 37.5 1.0 C F:SER192 4.0 35.6 1.0 O2A F:ADP501 4.0 37.1 1.0 PB F:ADP501 4.1 34.3 1.0 CG F:ASP280 4.2 43.9 1.0 OD1 F:ASP280 4.3 50.2 1.0 O1B F:ADP501 4.4 44.9 1.0 O F:SER192 4.6 43.1 1.0 CG2 F:THR223 4.6 51.5 1.0 PA F:ADP501 4.7 45.2 1.0 O1A F:ADP501 4.7 50.4 1.0 N F:GLN193 4.7 36.4 1.0 C F:LYS191 4.8 38.8 1.0 O3A F:ADP501 4.8 51.8 1.0 CB F:THR223 5.0 50.5 1.0

Aluminium binding site 6 out of 6 in the Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 6 of Yeast RAD51 in Complex with Ssdna and Adp-Aluminium Fluoride within 5.0Å range: probe atom residue distance (Å) B Occ B:Al502 b:53.4 occ:1.00 AL B:AF3502 0.0 53.4 1.0 F3 B:AF3502 1.6 45.7 1.0 F2 B:AF3502 1.6 48.4 1.0 F1 B:AF3502 1.6 44.9 1.0 OG B:SER192 1.7 33.1 1.0 O2B B:ADP501 2.6 43.7 1.0 CB B:SER192 3.0 26.9 1.0 PB B:ADP501 3.8 23.6 1.0 OG1 B:THR223 3.8 37.5 1.0 O1B B:ADP501 3.8 48.5 1.0 OD2 B:ASP280 4.0 29.6 1.0 CA B:SER192 4.1 11.2 1.0 MG B:MG503 4.1 16.2 1.0 N B:SER192 4.2 22.2 1.0 O2A B:ADP501 4.3 33.4 1.0 OD1 B:ASP280 4.4 46.2 1.0 CB B:THR223 4.5 31.1 1.0 CG B:ASP280 4.6 38.4 1.0 O3A B:ADP501 4.7 22.9 1.0 O3B B:ADP501 4.8 29.4 1.0 CG2 B:THR223 4.9 29.9 1.0 OE1 B:GLU221 4.9 44.7 1.0

J.Liu, S.Gore, W.-D.Heyer. Yeast RAD51-Ssdna Filament To Be Published.