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Aluminium in PDB 9q97: Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2

Enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2

All present enzymatic activity of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2:
2.7.7.6;

Other elements in 9q97:

The structure of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 also contains other interesting chemical elements:

Magnesium (Mg) 5 atoms
Fluorine (F) 15 atoms

Aluminium Binding Sites:

The binding sites of Aluminium atom in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 (pdb code 9q97). This binding sites where shown within 5.0 Angstroms radius around Aluminium atom.
In total 5 binding sites of Aluminium where determined in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2, PDB code: 9q97:
Jump to Aluminium binding site number: 1; 2; 3; 4; 5;

Aluminium binding site 1 out of 5 in 9q97

Go back to Aluminium Binding Sites List in 9q97
Aluminium binding site 1 out of 5 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 1 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Al602

b:218.6
occ:1.00
AL 1:AF3602 0.0 218.6 1.0
F3 1:AF3602 1.6 218.6 1.0
F2 1:AF3602 1.6 218.6 1.0
F1 1:AF3602 1.6 218.6 1.0
MG 1:MG603 2.6 484.6 1.0
O1B 1:ADP601 2.9 226.6 1.0
PB 1:ADP601 3.8 226.6 1.0
CB 1:THR148 3.9 257.5 1.0
O3B 1:ADP601 4.1 226.6 1.0
CA 1:THR148 4.2 257.5 1.0
O2B 1:ADP601 4.3 226.6 1.0

Aluminium binding site 2 out of 5 in 9q97

Go back to Aluminium Binding Sites List in 9q97
Aluminium binding site 2 out of 5 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 2 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Al602

b:863.0
occ:1.00
AL 2:AF3602 0.0 863.0 1.0
F3 2:AF3602 1.6 863.0 1.0
F2 2:AF3602 1.6 863.0 1.0
F1 2:AF3602 1.6 863.0 1.0
O3B 2:ADP601 2.6 826.8 1.0
CB 2:ASN149 2.7 780.6 1.0
C 2:THR148 3.0 828.1 1.0
N 2:ASN149 3.0 780.6 1.0
O 2:THR148 3.1 828.1 1.0
CA 2:ASN149 3.2 780.6 1.0
MG 2:MG603 3.4 827.2 1.0
O 2:GLU37 3.6 848.7 1.0
PB 2:ADP601 3.7 826.8 1.0
O2B 2:ADP601 3.7 826.8 1.0
CA 2:THR148 3.8 828.1 1.0
O 2:GLY36 4.0 870.9 1.0
CA 2:ARG38 4.1 844.4 1.0
C 2:GLU37 4.1 848.7 1.0
N 2:ARG38 4.4 844.4 1.0
N 2:THR148 4.6 828.1 1.0
N 2:GLY39 4.6 823.7 1.0
O1B 2:ADP601 4.7 826.8 1.0
C 2:ASN149 4.7 780.6 1.0
O3A 2:ADP601 4.8 826.8 1.0
C 2:ARG38 4.9 844.4 1.0
C 2:GLY36 4.9 870.9 1.0

Aluminium binding site 3 out of 5 in 9q97

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Aluminium binding site 3 out of 5 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 3 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Al602

b:756.9
occ:1.00
AL 3:AF3602 0.0 756.9 1.0
F3 3:AF3602 1.6 756.9 1.0
F1 3:AF3602 1.6 756.9 1.0
F2 3:AF3602 1.6 756.9 1.0
O3B 3:ADP601 2.5 695.2 1.0
MG 3:MG603 2.5 138.8 1.0
CB 3:ASN149 3.2 676.0 1.0
N 3:GLY39 3.3 721.5 1.0
PB 3:ADP601 3.7 695.2 1.0
CA 3:ARG38 4.0 733.1 1.0
CA 3:GLY39 4.0 721.5 1.0
C 3:ARG38 4.0 733.1 1.0
O1B 3:ADP601 4.1 695.2 1.0
N 3:ARG38 4.2 733.1 1.0
CA 3:ASN149 4.3 676.0 1.0
O 3:GLY36 4.3 733.5 1.0
O2B 3:ADP601 4.5 695.2 1.0
C 3:GLY36 4.6 733.5 1.0
CA 3:GLY36 4.7 733.5 1.0
N 3:ASN149 4.8 676.0 1.0
O3A 3:ADP601 4.8 695.2 1.0

Aluminium binding site 4 out of 5 in 9q97

Go back to Aluminium Binding Sites List in 9q97
Aluminium binding site 4 out of 5 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 4 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Al301

b:570.5
occ:1.00
AL 5:AF3301 0.0 570.5 1.0
F3 5:AF3301 1.6 570.5 1.0
F1 5:AF3301 1.6 570.5 1.0
F2 5:AF3301 1.6 570.5 1.0
O1B 4:ADP601 2.7 292.4 1.0
MG 4:MG602 3.1 91.0 1.0
O3B 4:ADP601 3.3 292.4 1.0
PB 4:ADP601 3.5 292.4 1.0
CB 5:ASP164 3.9 575.1 1.0
CB 5:ARG162 4.4 537.9 1.0
O3A 4:ADP601 4.6 292.4 1.0
O2B 4:ADP601 4.7 292.4 1.0
N 5:ASP164 4.8 575.1 1.0

Aluminium binding site 5 out of 5 in 9q97

Go back to Aluminium Binding Sites List in 9q97
Aluminium binding site 5 out of 5 in the Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2


Mono view


Stereo pair view

A full contact list of Aluminium with other atoms in the Al binding site number 5 of Cryoem Structure of Bacterial Transcription Intermediate Complex Mediated By Activator Pspf Containing Nifh Promoter Dna Containing Mismatch From -11 to -8 - Conformation 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
5:Al303

b:792.8
occ:1.00
AL 5:AF3303 0.0 792.8 1.0
F3 5:AF3303 1.6 792.8 1.0
F1 5:AF3303 1.6 792.8 1.0
F2 5:AF3303 1.6 792.8 1.0
MG 5:MG304 2.7 887.8 1.0
O1B 5:ADP302 3.4 736.8 1.0
O3B 5:ADP302 4.1 736.8 1.0
PB 5:ADP302 4.1 736.8 1.0
O2B 5:ADP302 4.7 736.8 1.0
N 5:GLY39 4.8 580.1 1.0
CB 5:ASP107 5.0 617.5 1.0

Reference:

F.Gao, F.Ye, M.Buck, X.Zhang. Subunit Specialisation in Aaa+ Proteins and Substrate Unfolding During Transcription Complex Remodelling To Be Published.
Page generated: Sun Jul 6 22:42:16 2025

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